bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_513957
Representative transcript
genome : 142,309,710 - 142,317,932 (8,223)
query : 1 - 3,503 (3,503/3,503)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000436177
Pongo
sp. (Orangutan) : CR858680
Macaca
sp. (Macaque) : AB169719
Mus
sp. (Mouse) : DQ346661
Rattus
sp. (Rat) : AF117211
Canis
sp. (Dog) : XM_545783
Equus
sp. (Horse) : ENSECAT00000019554
Monodelphis
sp. (Opossum) : XM_001363415
Gallus
sp. (Chicken) : AY297457
Danio
sp. (Zebrafish) : BC092675
Oryzias
sp. (Medaka) : ENSORLT00000015355
Oryzias
sp. (Medaka) : ENSORLT00000015504
XM_001174418
genome : 142,310,077 - 142,317,932 (7,856)
query : 1 - 3,158 (3,158/3,158)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000002932
genome : 142,310,500 - 142,317,722 (7,223)
query : 1 - 2,762 (2,762/2,762)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058578
genome : 142,310,500 - 142,317,721 (7,222)
query : 1 - 2,594 (2,594/2,594)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001174409
genome : 142,311,677 - 142,317,932 (6,256)
query : 1 - 2,987 (2,987/2,987)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001174415
genome : 142,313,187 - 142,317,932 (4,746)
query : 1 - 2,904 (2,904/2,904)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001174405
genome : 142,313,289 - 142,317,932 (4,644)
query : 1 - 2,916 (2,916/2,916)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000018817
(
AK093959
)
genome : 142,310,500 - 142,317,721 (7,222)
query : 1 - 2,599 (2,599/2,599)
4 exons
identity = 0.990
5'(0.994;1.000;0.984;0.989)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000021059
(
AK096204
)
genome : 142,310,502 - 142,317,721 (7,220)
query : 1 - 3,769 (3,769/3,769)
3 exons
identity = 0.988
5'(1.000;0.987;0.987)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000053725
(
BC051869
)
genome : 142,310,527 - 142,317,719 (7,193)
query : 1 - 2,739 (2,739/2,753)
5 exons
identity = 0.989
5'(1.000;1.000;0.984;0.994;0.988)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig111.293
142305821-142321820 W -
MER39
MIR
MER6B
AT_rich
L2
L1PB4
L2
MIR3
CT-rich
MIR3
L3_Mars
L1MA4
(TA)n
L1PA4