bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.troglodytes
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001171676
genome : 130,342,918 - 130,345,674 (2,757)
query : 1 - 1,443 (1,443/1,443)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000058744
genome : 130,343,425 - 130,345,357 (1,933)
query : 1 - 619 (619/619)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000045769
genome : 130,344,983 - 130,355,714 (10,732)
query : 1 - 4,581 (4,581/4,581)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000002382
genome : 130,345,740 - 130,355,713 (9,974)
query : 1 - 5,381 (5,381/5,381)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000002383
genome : 130,345,743 - 130,355,714 (9,972)
query : 1 - 4,508 (4,508/4,508)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_513792
genome : 130,347,973 - 130,357,099 (9,127)
query : 1 - 5,894 (5,894/5,894)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001171634
genome : 130,354,824 - 130,391,976 (37,153)
query : 1 - 5,038 (5,038/5,038)
13 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001171600
genome : 130,354,824 - 130,391,974 (37,151)
query : 1 - 4,706 (4,706/4,706)
12 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001171663
genome : 130,354,824 - 130,391,974 (37,151)
query : 1 - 4,661 (4,661/4,661)
11 exons
identity = 0.998
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001171624
genome : 130,354,824 - 130,391,679 (36,856)
query : 1 - 4,539 (4,539/4,539)
12 exons
identity = 0.998
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_513793
genome : 130,354,824 - 130,391,027 (36,204)
query : 1 - 4,810 (4,810/4,810)
11 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000002386
genome : 130,355,747 - 130,390,570 (34,824)
query : 1 - 3,457 (3,457/3,457)
12 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPTRT00000002389
genome : 130,355,948 - 130,392,034 (36,087)
query : 1 - 3,579 (3,579/3,579)
11 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000050745
(
BC021024
)
genome : 130,343,424 - 130,345,357 (1,934)
query : 1 - 620 (620/641)
2 exons
identity = 0.992
3'(0.996;0.990)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000001156
(
AB037862
)
genome : 130,345,740 - 130,355,713 (9,974)
query : 1 - 5,378 (5,378/5,378)
10 exons
identity = 0.991
5'(0.976;0.986;0.996;1.000;1.000;1.000;0.997;
0.991;1.000;0.981)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000006379
(
AK023105
)
genome : 130,351,285 - 130,355,713 (4,429)
query : 1 - 3,277 (3,277/3,277)
8 exons
identity = 0.991
5'(0.996;1.000;1.000;1.000;0.997;0.991;1.000;
0.979)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000244494
(
AJ011122
)
genome : 130,355,948 - 130,419,634 (63,687)
query : 1 - 3,597 (3,597/3,599)
13 exons
identity = 0.968
3'(0.996;1.000;1.000)5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000011305
(
AK054691
)
genome : 130,355,948 - 130,357,919 (1,972)
query : 1 - 1,972 (1,972/1,974)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig245.163
130342726-130346004 W +
369
130346005-130346373 N
Contig245.164
130346374-130358725 W +
L2
MIR
AluJb
MIRb
AluSx
AluY
AluSx
AluJb
(T)n
(CGG)n
AluJb
AluSc
AluSx
AT_rich
AT_rich