bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.abelii
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSPPYT00000008192
Representative transcript
genome : 1,384,831 - 1,394,873 (10,043)
query : 1 - 3,219 (3,219/3,219)
30 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000000459
Pan
sp. (Chimpanzee) : XM_001172572
Mus
sp. (Mouse) : AK122358
Rattus
sp. (Rat) : XM_001059458
Canis
sp. (Dog) : ENSCAFT00000031139
Equus
sp. (Horse) : ENSECAT00000015003
Bos
sp. (Cow) : XM_610186
Monodelphis
sp. (Opossum) : XM_001363312
Gallus
sp. (Chicken) : XM_415627
Danio
sp. (Zebrafish) : XR_044855
Oryzias
sp. (Medaka) : ENSORLT00000006318
Tetraodon
sp. (Tetraodon) : GSTENT00034418001
Takifugu
sp. (Fugu) : SINFRUT00000181122
ENSPPYT00000008193
Representative transcript
genome : 1,395,824 - 1,398,188 (2,365)
query : 1 - 939 (939/939)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000036415
Pan
sp. (Chimpanzee) : ENSPTRT00000014004
Mus
sp. (Mouse) : AK158743
Rattus
sp. (Rat) : XM_001059638
Canis
sp. (Dog) : XM_537015
Equus
sp. (Horse) : XM_001915564
Bos
sp. (Cow) : BC142410
Monodelphis
sp. (Opossum) : XM_001363400
Gallus
sp. (Chicken) : BX930961
Danio
sp. (Zebrafish) : BC075886
Oryzias
sp. (Medaka) : ENSORLT00000009672
Tetraodon
sp. (Tetraodon) : CR728486
Takifugu
sp. (Fugu) : SINFRUT00000146154
ENSPPYT00000008194
Representative transcript
genome : 1,398,350 - 1,408,878 (10,529)
query : 1 - 918 (918/918)
11 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000276737
Pan
sp. (Chimpanzee) : XM_001159025
Macaca
sp. (Macaque) : XM_001118590
Mus
sp. (Mouse) : AK078230
Rattus
sp. (Rat) : BC098716
Canis
sp. (Dog) : XM_547198
Equus
sp. (Horse) : XM_001915291
Bos
sp. (Cow) : BC142266
Monodelphis
sp. (Opossum) : ENSMODT00000020596
Gallus
sp. (Chicken) : BX934921
Danio
sp. (Zebrafish) : BC071333
Oryzias
sp. (Medaka) : ENSORLT00000009659
HIT000000459
(
AB018277
)
genome : 1,380,922 - 1,395,825 (14,904)
query : 1 - 4,530 (4,530/4,530)
31 exons
identity = 0.913
5'(0.990;0.959;0.984;0.978;0.947;0.959;0.981;
0.985;0.952;0.986;0.946;0.974;0.957;1.000;
0.991;0.986;1.000;0.983;0.968;0.971;0.944)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000036415
(
BC013943
)
genome : 1,395,631 - 1,398,257 (2,627)
query : 4 - 1,204 (1,201/1,236)
6 exons
identity = 0.963
3'(0.953;0.969;0.955;0.974;0.977;0.956)5'
coverage = 0.995
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000276737
(
CR597542
)
genome : 1,398,344 - 1,409,126 (10,783)
query : 1 - 1,172 (1,172/1,172)
11 exons
identity = 0.968
5'(0.948;0.948;0.971)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig4155.3
1389006-1405005 W -
(TCCCC)n
C-rich
(CCCCAG)n
C-rich
MER20
L2b
GC_rich
L1M5
AluSx
L2a
AluJo
L2a
AluSx
AluY
L1MB4
AluSg