bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.abelii
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSPPYT00000016190
Representative transcript
genome : 99,143,969 - 99,177,261 (33,293)
query : 1 - 3,840 (3,840/3,840)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000042334
Pan
sp. (Chimpanzee) : XR_023610
Macaca
sp. (Macaque) : XM_001100342
Mus
sp. (Mouse) : AK150275
Rattus
sp. (Rat) : BC131852
Canis
sp. (Dog) : XM_541898
Equus
sp. (Horse) : XM_001499841
Bos
sp. (Cow) : ENSBTAT00000020961
Monodelphis
sp. (Opossum) : ENSMODT00000018026
Gallus
sp. (Chicken) : CR386838
Danio
sp. (Zebrafish) : ENSDART00000058590
Oryzias
sp. (Medaka) : ENSORLT00000019870
Tetraodon
sp. (Tetraodon) : GSTENT00006835001
Takifugu
sp. (Fugu) : SINFRUT00000148155
ENSPPYT00000016191
Representative transcript
genome : 99,177,665 - 99,210,207 (32,543)
query : 1 - 5,157 (5,157/5,157)
26 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000058813
Pan
sp. (Chimpanzee) : XR_023600
Macaca
sp. (Macaque) : XM_001100428
Mus
sp. (Mouse) : BC059902
Rattus
sp. (Rat) : AF077000
Canis
sp. (Dog) : XM_846437
Equus
sp. (Horse) : XM_001495506
Bos
sp. (Cow) : BC120008
Monodelphis
sp. (Opossum) : ENSMODT00000018000
Danio
sp. (Zebrafish) : NM_001044928
Danio
sp. (Zebrafish) : XM_001345775
Oryzias
sp. (Medaka) : ENSORLT00000019855
Takifugu
sp. (Fugu) : SINFRUT00000148152
HIT000042334
(
D83782
)
genome : 99,143,868 - 99,177,402 (33,535)
query : 145 - 4,226 (4,082/4,226)
22 exons
identity = 0.985
5'(0.996;0.992;1.000;0.986;0.981;0.977;0.984;
1.000;0.989;0.990;0.963;0.992;0.979;0.965;
0.991;0.979;0.977;1.000;0.994;0.988;0.986;
0.982)3'
coverage = 0.966
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000010674
(
AK027402
)
genome : 99,143,932 - 99,177,402 (33,471)
query : 1 - 3,230 (3,230/3,230)
17 exons
identity = 0.982
5'(0.994;0.992;1.000;0.989;0.990;0.968;0.989;
0.979;0.960;0.983;0.977;0.977;0.988;0.988;
0.988;0.986;0.982)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000015092
(
AK074312
)
genome : 99,171,340 - 99,177,403 (6,064)
query : 6 - 2,051 (2,046/2,067)
10 exons
identity = 0.978
5'(0.979;0.965;0.991;0.975;0.977;1.000;0.994;
0.988;0.986;0.969)3'
coverage = 0.998
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000015872
(
AK091005
)
genome : 99,175,263 - 99,177,402 (2,140)
query : 8 - 2,152 (2,145/2,152)
1 exon
identity = 0.969
5'(0.969)3'
coverage = 0.997
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000262560
(
BC067356
)
genome : 99,175,498 - 99,177,047 (1,550)
query : 1 - 1,260 (1,260/1,277)
2 exons
identity = 0.975
3'(0.972;0.990)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000058813
(
AB025194
)
genome : 99,177,665 - 99,210,270 (32,606)
query : 1 - 5,224 (5,224/5,234)
26 exons
identity = 0.980
3'(0.975;0.991;0.986;1.000;1.000;0.977;0.977)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000011771
(
AK055157
)
genome : 99,177,665 - 99,210,293 (32,629)
query : 1 - 2,925 (2,925/2,925)
21 exons
identity = 0.983
3'(0.975)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
3303
99140615-99143794 N
Contig1236.1
99143795-99145490 W +
336
99145491-99145826 N
Contig1236.2
99145827-99172496 W +
10
99172497-99172506 N
Contig1236.3
99172507-99180614 W +