bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
P.abelii
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
CR857752
Representative transcript
genome : 175,122,557 - 175,136,928 (14,372)
query : 1 - 1,971 (1,971/1,986)
8 exons
identity = 0.994
5'(0.980;0.993;1.000;1.000;0.996;0.993;1.000;
0.996)3'
coverage = 0.999
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000016768
Pan
sp. (Chimpanzee) : XM_001152969
Macaca
sp. (Macaque) : XM_001114061
Mus
sp. (Mouse) : BC026682
Rattus
sp. (Rat) : BC081977
Canis
sp. (Dog) : XM_546695
Equus
sp. (Horse) : ENSECAT00000026269
Bos
sp. (Cow) : ENSBTAT00000026385
Monodelphis
sp. (Opossum) : XM_001381487
Danio
sp. (Zebrafish) : ENSDART00000081026
NM_001131486
genome : 175,122,557 - 175,136,928 (14,372)
query : 1 - 1,971 (1,971/1,986)
8 exons
identity = 0.994
5'(0.980;0.993;1.000;1.000;0.996;0.993;1.000;
0.996)3'
coverage = 0.999
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPPYT00000001579
genome : 175,122,557 - 175,136,930 (14,374)
query : 1 - 1,975 (1,975/1,975)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
CR857580
Representative transcript
genome : 175,134,712 - 175,161,508 (26,797)
query : 115 - 4,150 (4,036/4,164)
15 exons
identity = 0.997
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
0.986;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.973
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000000432
Pan
sp. (Chimpanzee) : XM_001152717
Macaca
sp. (Macaque) : XM_001113972
Mus
sp. (Mouse) : AK038546
Rattus
sp. (Rat) : ENSRNOT00000010396
Canis
sp. (Dog) : XM_546696
Equus
sp. (Horse) : ENSECAT00000000306
Bos
sp. (Cow) : BC150117
Monodelphis
sp. (Opossum) : ENSMODT00000038585
Gallus
sp. (Chicken) : XM_426664
Danio
sp. (Zebrafish) : BC071437
Danio
sp. (Zebrafish) : BC095856
Oryzias
sp. (Medaka) : AB435956
Tetraodon
sp. (Tetraodon) : GSTENT00034609001
Takifugu
sp. (Fugu) : SINFRUT00000144452
NM_001133732
genome : 175,134,712 - 175,161,508 (26,797)
query : 115 - 4,150 (4,036/4,164)
15 exons
identity = 0.997
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
0.986;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.973
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSPPYT00000001580
genome : 175,134,698 - 175,161,618 (26,921)
query : 1 - 4,160 (4,160/4,160)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000018139
(
AK093272
)
genome : 175,073,819 - 175,103,233 (29,415)
query : 1 - 1,805 (1,805/1,805)
4 exons
identity = 0.965
3'(0.964)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000000432
(
AB014607
)
genome : 175,105,859 - 175,161,521 (55,663)
query : 93 - 6,359 (6,267/6,359)
18 exons
identity = 0.946
3'(0.925;0.929;0.957;0.954;0.992;0.992;0.993;
0.988;1.000;1.000;0.986;0.992;0.994;0.978;
0.990;1.000;0.986;0.932)5'
coverage = 0.986
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000016768
(
AK091901
)
genome : 175,122,521 - 175,136,925 (14,405)
query : 1 - 2,005 (2,005/2,005)
8 exons
identity = 0.970
5'(0.943;0.972;0.987;0.981;0.960;0.986;0.986;
0.970)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000007211
(
AK023937
)
genome : 175,135,780 - 175,161,521 (25,742)
query : 104 - 3,082 (2,979/3,082)
15 exons
identity = 0.979
3'(0.974;0.992;0.985;0.993;0.988;1.000;1.000;
0.986;0.992;0.994;0.978;0.990;1.000;0.986;
0.932)5'
coverage = 0.967
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000015979
(
AK091112
)
genome : 175,135,984 - 175,161,508 (25,525)
query : 181 - 2,875 (2,695/2,875)
14 exons
identity = 0.981
3'(0.976;0.992;0.992;0.993;0.988;1.000;1.000;
0.986;0.992;0.994;0.978;0.990;1.000;0.952)5'
coverage = 0.937
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig1135.75
175093690-175098315 W -
10
175098316-175098325 N
Contig1135.74
175098326-175116180 W -
308
175116181-175116488 N
Contig1135.73
175116489-175120977 W -
89
175120978-175121066 N
Contig1135.72
175121067-175123566 W -
10
175123567-175123576 N
Contig1135.71
175123577-175127606 W -
475
175127607-175128081 N
Contig1135.70
175128082-175149012 W -
56
175149013-175149068 N
Contig1135.69
175149069-175158312 W -
58
175158313-175158370 N
Contig1135.68
175158371-175173689 W -