bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
O.latipes
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSORLT00000000849
Representative transcript
genome : 1,600,335 - 1,601,275 (941)
query : 1 - 816 (816/816)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSORLT00000000850
genome : 1,600,539 - 1,601,504 (966)
query : 1 - 633 (633/633)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSORLT00000000852
Representative transcript
genome : 1,603,151 - 1,604,852 (1,702)
query : 1 - 336 (336/336)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSORLT00000000876
Representative transcript
genome : 1,606,536 - 1,611,694 (5,159)
query : 1 - 1,935 (1,935/1,935)
12 exons
identity = 0.994
5'(1.000;0.988;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.960)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000283262
Pan
sp. (Chimpanzee) : XM_508698
Pongo
sp. (Orangutan) : ENSPPYT00000004494
Macaca
sp. (Macaque) : AB174596
Mus
sp. (Mouse) : BC020185
Rattus
sp. (Rat) : BC083809
Canis
sp. (Dog) : XM_533975
Equus
sp. (Horse) : XM_001491421
Bos
sp. (Cow) : BC103341
Monodelphis
sp. (Opossum) : XM_001368738
Gallus
sp. (Chicken) : AJ720853
Danio
sp. (Zebrafish) : ENSDART00000074805
Tetraodon
sp. (Tetraodon) : CR683750
Takifugu
sp. (Fugu) : SINFRUT00000168829
ENSORLT00000000881
Representative transcript
genome : 1,612,060 - 1,614,198 (2,139)
query : 1 - 594 (594/594)
3 exons
identity = 0.990
3'(1.000;0.962;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
scaffold540_contig100086
1601115-1602774 W -
10
1602775-1602784 N
scaffold540_contig100085
1602785-1608540 W -
10
1608541-1608550 N
scaffold540_contig100084
1608551-1615283 W -
10
1615284-1615293 N
scaffold540_contig100083
1615294-1617114 W -
AT_rich
AT_rich
AT_rich
(CACCC)n
SINE_TE