bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
O.latipes
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSORLT00000004110
Representative transcript
genome : 5,562,289 - 5,562,593 (305)
query : 1 - 219 (219/219)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSORLT00000004121
Representative transcript
genome : 5,563,813 - 5,572,817 (9,005)
query : 1 - 1,523 (1,523/1,523)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000030144
Pan
sp. (Chimpanzee) : XM_516493
Pongo
sp. (Orangutan) : ENSPPYT00000016086
Macaca
sp. (Macaque) : XM_001087877
Mus
sp. (Mouse) : AK076113
Rattus
sp. (Rat) : ENSRNOT00000017469
Canis
sp. (Dog) : ENSCAFT00000015997
Equus
sp. (Horse) : XM_001494739
Bos
sp. (Cow) : BC147989
Monodelphis
sp. (Opossum) : XM_001380506
Gallus
sp. (Chicken) : XM_414243
Danio
sp. (Zebrafish) : BC044361
Tetraodon
sp. (Tetraodon) : CR678534
Takifugu
sp. (Fugu) : SINFRUT00000149309
ENSORLT00000004140
Representative transcript
genome : 5,573,570 - 5,613,344 (39,775)
query : 1 - 2,640 (2,640/2,640)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000434682
Pan
sp. (Chimpanzee) : XR_024124
Pongo
sp. (Orangutan) : ENSPPYT00000016090
Macaca
sp. (Macaque) : DQ417745
Mus
sp. (Mouse) : BC115866
Rattus
sp. (Rat) : M92075
Canis
sp. (Dog) : ENSCAFT00000002819
Equus
sp. (Horse) : XM_001494959
Bos
sp. (Cow) : XM_598135
Gallus
sp. (Chicken) : XM_425148
Danio
sp. (Zebrafish) : ENSDART00000012940
Danio
sp. (Zebrafish) : XM_001341656
Tetraodon
sp. (Tetraodon) : GSTENT00027480001
Takifugu
sp. (Fugu) : SINFRUT00000149314
scaffold336_contig88204
5560315-5576314 W -
AT_rich
SINE_TE
MRE1_OL
AT_rich
AT_rich
AT_rich
piggyBAC-N1_OL
(TG)n
(CCCTAA)n
AT_rich