bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.musculus
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSMUST00000105362
genome : 79,727,729 - 79,751,153 (23,425)
query : 1 - 2,081 (2,081/2,081)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
NM_001122604
genome : 79,727,736 - 79,751,158 (23,423)
query : 1 - 2,082 (2,082/2,096)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
NM_001122605
genome : 79,727,736 - 79,751,158 (23,423)
query : 1 - 2,082 (2,082/2,096)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
NM_133188
genome : 79,727,736 - 79,751,158 (23,423)
query : 1 - 2,079 (2,079/2,093)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
AK152314
Representative transcript
genome : 79,727,766 - 79,751,148 (23,383)
query : 2 - 2,038 (2,037/2,039)
12 exons
identity = 0.998
5'(1.000;0.999)3'
coverage = 0.999
DDBJ
Ortholog candidate
H.sapiens
(Human) : HIT000035629
Pan
sp. (Chimpanzee) : XM_001147948
Pongo
sp. (Orangutan) : ENSPPYT00000010869
Macaca
sp. (Macaque) : AB173441
Rattus
sp. (Rat) : BC098930
Canis
sp. (Dog) : ENSCAFT00000031038
Equus
sp. (Horse) : XM_001498636
Bos
sp. (Cow) : BC149117
Monodelphis
sp. (Opossum) : ENSMODT00000006477
Gallus
sp. (Chicken) : AJ719492
Danio
sp. (Zebrafish) : BC114331
Oryzias
sp. (Medaka) : ENSORLT00000010388
Tetraodon
sp. (Tetraodon) : GSTENT00019323001
Takifugu
sp. (Fugu) : SINFRUT00000177667
AK152345
genome : 79,727,766 - 79,751,148 (23,383)
query : 2 - 2,038 (2,037/2,039)
12 exons
identity = 0.998
5'(1.000;0.999)3'
coverage = 0.999
DDBJ
BC049355
genome : 79,727,819 - 79,751,152 (23,334)
query : 1 - 1,993 (1,993/2,078)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
DDBJ
ENSMUST00000092305
genome : 79,727,819 - 79,751,153 (23,335)
query : 1 - 1,994 (1,994/1,994)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
BC058775
genome : 79,727,832 - 79,750,644 (22,813)
query : 1 - 1,479 (1,479/1,512)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
DDBJ
AF225910
genome : 79,727,842 - 79,750,819 (22,978)
query : 1 - 1,633 (1,633/1,633)
12 exons
identity = 0.998
5'(1.000;0.994)3'
coverage = 1.000
DDBJ
AK148023
genome : 79,727,859 - 79,750,638 (22,780)
query : 2 - 1,440 (1,439/1,442)
12 exons
identity = 0.999
5'(1.000;1.000)3'
coverage = 0.998
DDBJ
ENSMUST00000105361
genome : 79,727,859 - 79,750,640 (22,782)
query : 1 - 1,441 (1,441/1,441)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
AK197505
genome : 79,748,082 - 79,748,149 (68)
query : 1 - 68 (68/68)
1 exon
identity = 0.985
5'(0.985)3'
coverage = 1.000
DDBJ
BC119459
genome : 79,748,134 - 79,750,920 (2,787)
query : 4 - 679 (676/681)
2 exons
identity = 0.993
5'(0.947;0.995)3'
coverage = 0.993
DDBJ
AK010657
genome : 79,750,335 - 79,751,149 (815)
query : 1 - 816 (816/816)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
DDBJ
AK194671
genome : 79,750,472 - 79,750,568 (97)
query : 1 - 97 (97/97)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
DDBJ
M33330
Representative transcript
genome : 79,755,202 - 79,756,857 (1,656)
query : 7 - 500 (494/500)
4 exons
identity = 0.998
5'(1.000;1.000;0.996;1.000)3'
coverage = 0.988
DDBJ
Ortholog candidate
H.sapiens
(Human) : HIT000338291
Pan
sp. (Chimpanzee) : ENSPTRT00000018727
Pongo
sp. (Orangutan) : CR857922
Macaca
sp. (Macaque) : XM_001095102
Rattus
sp. (Rat) : M19393
Canis
sp. (Dog) : XM_533959
Bos
sp. (Cow) : BC102068
Monodelphis
sp. (Opossum) : XM_001373138
Gallus
sp. (Chicken) : M33331
Danio
sp. (Zebrafish) : BC081516
Oryzias
sp. (Medaka) : ENSORLT00000007033
Takifugu
sp. (Fugu) : SINFRUT00000146235
NM_009091
genome : 79,755,202 - 79,756,857 (1,656)
query : 7 - 500 (494/500)
4 exons
identity = 0.998
5'(1.000;1.000;0.996;1.000)3'
coverage = 0.988
RefSeq
AK135319
genome : 79,755,206 - 79,756,857 (1,652)
query : 5 - 431 (427/431)
4 exons
identity = 0.977
5'(1.000;1.000;1.000;0.888)3'
coverage = 0.991
DDBJ
AK146147
genome : 79,755,205 - 79,756,858 (1,654)
query : 2 - 493 (492/493)
4 exons
identity = 0.998
5'(1.000;0.988;1.000;1.000)3'
coverage = 0.998
DDBJ
ENSMUST00000068408
genome : 79,755,204 - 79,756,857 (1,654)
query : 1 - 492 (492/492)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
ENSMUST00000077945
genome : 79,755,204 - 79,756,825 (1,622)
query : 1 - 397 (397/397)
4 exons
identity = 0.975
5'(1.000;1.000;1.000;0.825)3'
coverage = 1.000
Ensembl
ENSMUST00000062674
genome : 79,755,390 - 79,756,832 (1,443)
query : 1 - 572 (572/572)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
XM_001475768
genome : 79,755,509 - 79,756,859 (1,351)
query : 22 - 500 (479/520)
3 exons
identity = 0.990
5'(0.959;0.996;1.000)3'
coverage = 0.921
RefSeq
BC010763
genome : 79,755,501 - 79,756,859 (1,359)
query : 1 - 488 (488/524)
3 exons
identity = 0.984
5'(0.924;1.000;1.000)3'
coverage = 1.000
DDBJ
BC094409
genome : 79,755,519 - 79,756,859 (1,341)
query : 18 - 487 (470/520)
3 exons
identity = 0.998
5'(1.000;0.996;1.000)3'
coverage = 0.981
DDBJ
XM_001475749
genome : 79,755,519 - 79,756,859 (1,341)
query : 13 - 482 (470/502)
3 exons
identity = 0.998
5'(1.000;0.996;1.000)3'
coverage = 0.936
RefSeq
ENSMUST00000105359
genome : 79,758,722 - 79,781,008 (22,287)
query : 1 - 9,173 (9,173/9,173)
15 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
AK140637
Representative transcript
genome : 79,763,592 - 79,766,100 (2,509)
query : 1 - 2,351 (2,351/2,351)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
DDBJ
Ortholog candidate
H.sapiens
(Human) : HIT000058298
Pan
sp. (Chimpanzee) : XR_025223
Pongo
sp. (Orangutan) : ENSPPYT00000010871
Macaca
sp. (Macaque) : ENSMMUT00000004321
Rattus
sp. (Rat) : XM_001076585
Canis
sp. (Dog) : XM_542202
Bos
sp. (Cow) : XM_604945
Monodelphis
sp. (Opossum) : ENSMODT00000006426
Danio
sp. (Zebrafish) : ENSDART00000091689
Oryzias
sp. (Medaka) : ENSORLT00000016562
Tetraodon
sp. (Tetraodon) : GSTENT00008284001
Takifugu
sp. (Fugu) : SINFRUT00000129668
AK086733
genome : 79,763,775 - 79,765,907 (2,133)
query : 1 - 2,138 (2,138/2,138)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
DDBJ
AC140229.3
79748029-79764028 F +
NCBI
(TG)n
(GA)n
PB1D9
PB1D9
(A)n
(TG)n
B3
RMER1B
RMER1B
Lx5
B2_Mm2
B1_Mus2
PB1D9
AT_rich
B3A
ID_B1
B1_Mur2
B1_Mus1
B1_Mm
PB1D9
RMER4B
B1_Mus2
(CAAAA)n
(TC)n
B1_Mm
RSINE1
B1_Mus1
URR1A
(CAGAGA)n
B1_Mus1
ID_B1
B1_Mur3
(TTTCC)n
PB1D7
(TC)n
(TG)n
B3A
(CAGAGA)n
(CA)n
ID_B1