bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.mulatta
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
AB060195
Representative transcript
genome : 72,446,490 - 72,459,105 (12,616)
query : 1 - 2,884 (2,884/2,900)
9 exons
identity = 0.993
3'(0.995;1.000;1.000;0.990;0.990;1.000;0.992;
1.000;1.000)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000252417
Pan
sp. (Chimpanzee) : XM_001173366
Pan
sp. (Chimpanzee) : XM_511073
Pongo
sp. (Orangutan) : ENSPPYT00000008867
Mus
sp. (Mouse) : AY223868
Rattus
sp. (Rat) : XR_009153
Bos
sp. (Cow) : BC149637
Monodelphis
sp. (Opossum) : XM_001375431
Tetraodon
sp. (Tetraodon) : CR681950
ENSMMUT00000039236
genome : 72,446,612 - 72,459,508 (12,897)
query : 1 - 1,816 (1,816/1,816)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000013156
genome : 72,446,612 - 72,459,296 (12,685)
query : 1 - 1,799 (1,799/1,799)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001108005
genome : 72,446,623 - 72,459,497 (12,875)
query : 1 - 1,767 (1,767/1,767)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001108060
genome : 72,446,623 - 72,459,298 (12,676)
query : 1 - 1,817 (1,817/1,817)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001108120
genome : 72,446,623 - 72,459,298 (12,676)
query : 1 - 1,790 (1,790/1,790)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001107949
genome : 72,446,623 - 72,459,162 (12,540)
query : 6 - 1,660 (1,655/1,660)
12 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.984)5'
coverage = 0.997
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000013154
genome : 72,446,816 - 72,448,721 (1,906)
query : 1 - 471 (471/471)
3 exons
identity = 0.955
3'(1.000;1.000;0.939)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000013157
genome : 72,449,578 - 72,459,042 (9,465)
query : 1 - 897 (897/897)
8 exons
identity = 0.982
3'(1.000;0.957;1.000;1.000;1.000;0.950;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000243655
(
AF521893
)
genome : 72,446,623 - 72,459,497 (12,875)
query : 25 - 1,791 (1,767/1,989)
13 exons
identity = 0.958
3'(0.939;0.978;0.979;0.969;0.991;0.968;0.954;
0.967;0.980;0.946;0.978;0.957;0.898)5'
coverage = 0.896
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000252417
(
AY358373
)
genome : 72,446,623 - 72,459,164 (12,542)
query : 1 - 1,683 (1,683/1,876)
13 exons
identity = 0.961
3'(0.939;0.978;0.963;0.979;0.977;0.991;0.968;
0.954;0.959;0.980;0.942;0.978;0.955)5'
coverage = 0.903
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000021618
(
AK096763
)
genome : 72,451,677 - 72,455,067 (3,391)
query : 1 - 3,261 (3,261/3,262)
4 exons
identity = 0.821
5'(0.899;0.886;0.884;0.623)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000020921
(
AK096066
)
genome : 72,459,878 - 72,474,174 (14,297)
query : 5 - 2,242 (2,238/2,242)
7 exons
identity = 0.910
5'(0.877)3'
coverage = 0.998
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig
72444797-72460796 F +
AluJb
MIR
Charlie8
MER63A
MIR
MIRm
AluSp
MLT1H
L1M5
AluJb
L1M5
AluSx
AluY
FLAM_C
L2
AluSx
AluSx
AluY
AluSx
AluJb
MIRb