bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.mulatta
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001084407
Representative transcript
genome : 353,995 - 356,814 (2,820)
query : 3 - 1,109 (1,107/1,109)
5 exons
identity = 0.986
3'(1.000;1.000;1.000;0.963;0.973)5'
coverage = 0.998
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000029689
Pan
sp. (Chimpanzee) : XR_021313
Pongo
sp. (Orangutan) : ENSPPYT00000008147
Mus
sp. (Mouse) : AK163190
Canis
sp. (Dog) : XM_860368
Equus
sp. (Horse) : ENSECAT00000024280
Bos
sp. (Cow) : BC105311
Monodelphis
sp. (Opossum) : XM_001365117
Gallus
sp. (Chicken) : ENSGALT00000021958
Danio
sp. (Zebrafish) : BC095131
Oryzias
sp. (Medaka) : ENSORLT00000008550
Tetraodon
sp. (Tetraodon) : CR714904
Takifugu
sp. (Fugu) : SINFRUT00000130901
XM_001084527
genome : 353,995 - 356,775 (2,781)
query : 10 - 1,077 (1,068/1,077)
5 exons
identity = 0.994
3'(1.000;1.000;1.000;0.963;1.000)5'
coverage = 0.992
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000000882
genome : 354,087 - 356,814 (2,728)
query : 11 - 1,025 (1,015/1,046)
5 exons
identity = 0.991
3'(1.000;1.000;1.000;1.000;0.973)5'
coverage = 0.970
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000000883
genome : 354,095 - 356,773 (2,679)
query : 1 - 879 (879/879)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001118461
Representative transcript
genome : 357,715 - 364,779 (7,065)
query : 1 - 3,422 (3,422/3,422)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000016690
Pan
sp. (Chimpanzee) : XM_510709
Pongo
sp. (Orangutan) : ENSPPYT00000008148
Mus
sp. (Mouse) : AB045293
Rattus
sp. (Rat) : XM_001061336
Canis
sp. (Dog) : XM_537022
Equus
sp. (Horse) : XM_001915417
Bos
sp. (Cow) : BC146051
Monodelphis
sp. (Opossum) : XM_001372542
Gallus
sp. (Chicken) : ENSGALT00000012079
Danio
sp. (Zebrafish) : XM_001920332
Oryzias
sp. (Medaka) : ENSORLT00000012225
Tetraodon
sp. (Tetraodon) : GSTENT00015043001
Takifugu
sp. (Fugu) : SINFRUT00000140924
ENSMMUT00000039742
genome : 357,740 - 364,593 (6,854)
query : 1 - 3,319 (3,319/3,319)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000000884
genome : 358,739 - 364,565 (5,827)
query : 1 - 2,175 (2,175/2,175)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000029689
(
BC000507
)
genome : 354,005 - 356,775 (2,771)
query : 28 - 1,086 (1,059/1,114)
5 exons
identity = 0.943
3'(0.920;0.954;0.976;0.933;0.960)5'
coverage = 0.974
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000021699
(
AK096844
)
genome : 354,003 - 356,775 (2,773)
query : 27 - 2,230 (2,204/2,230)
3 exons
identity = 0.909
3'(0.921;0.954;0.905)5'
coverage = 0.988
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000007999
(
AK024725
)
genome : 358,737 - 363,844 (5,108)
query : 1 - 1,869 (1,869/1,905)
10 exons
identity = 0.943
3'(0.915;0.983;0.959;0.961;0.971;0.952;0.923;
0.931;0.970)5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000039214
(
BC021557
)
genome : 358,740 - 381,414 (22,675)
query : 6 - 2,458 (2,453/2,484)
13 exons
identity = 0.926
3'(0.924;0.983;0.959;0.966;0.971;0.960;0.923;
0.931;0.970)5'
coverage = 0.998
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000016690
(
AK091823
)
genome : 358,739 - 364,555 (5,817)
query : 66 - 2,346 (2,281/2,346)
12 exons
identity = 0.944
3'(0.922;0.983;0.959;0.966;0.971;0.960;0.923;
0.931;0.970)5'
coverage = 0.972
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig
347404-363403 F +
AluY
AluSq
AluSc
AluMacYa3
AluSx
AluSg
C-rich
AluJo
AluY