bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.mulatta
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
AB179341
Representative transcript
genome : 2,946,985 - 2,951,805 (4,821)
query : 2 - 333 (332/465)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.994
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000036202
Pan
sp. (Chimpanzee) : XM_001173192
Macaca
sp. (Macaque) : ENSMMUT00000026515
Mus
sp. (Mouse) : AK002868
Rattus
sp. (Rat) : BC058463
Canis
sp. (Dog) : XM_859561
Equus
sp. (Horse) : XM_001498592
Bos
sp. (Cow) : ENSBTAT00000026036
Monodelphis
sp. (Opossum) : XM_001371533
Danio
sp. (Zebrafish) : BC054698
Takifugu
sp. (Fugu) : SINFRUT00000162159
XM_001088441
genome : 2,948,122 - 2,952,341 (4,220)
query : 1 - 479 (479/479)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001087100
genome : 2,952,342 - 2,971,198 (18,857)
query : 1 - 1,210 (1,210/1,210)
11 exons
identity = 0.994
3'(0.964)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000026513
genome : 2,953,033 - 2,971,185 (18,153)
query : 1 - 8,450 (8,450/8,450)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000000049
genome : 2,953,033 - 2,955,412 (2,380)
query : 1 - 696 (696/696)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001087694
genome : 2,954,954 - 2,957,496 (2,543)
query : 1 - 2,304 (2,304/2,304)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001087451
Representative transcript
genome : 2,955,711 - 2,962,547 (6,837)
query : 1 - 6,837 (6,837/6,837)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
AB172628
Representative transcript
genome : 2,955,740 - 2,957,368 (1,629)
query : 1 - 1,632 (1,632/1,632)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000058466
Pan
sp. (Chimpanzee) : ENSPTRT00000060415
Pongo
sp. (Orangutan) : ENSPPYT00000008263
Mus
sp. (Mouse) : AK090123
Rattus
sp. (Rat) : BC089967
Canis
sp. (Dog) : ENSCAFT00000030745
Equus
sp. (Horse) : ENSECAT00000012108
Bos
sp. (Cow) : BC151743
Monodelphis
sp. (Opossum) : XM_001371513
HIT000013065
(
AK056451
)
genome : 2,942,518 - 2,946,195 (3,678)
query : 1 - 3,206 (3,206/3,206)
3 exons
identity = 0.843
3'(0.892;0.898;0.755)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000036202
(
BC013306
)
genome : 2,948,118 - 2,952,340 (4,223)
query : 113 - 943 (831/962)
2 exons
identity = 0.892
5'(0.884;0.894)3'
coverage = 0.881
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000052524
(
BC041155
)
genome : 2,952,343 - 2,971,198 (18,856)
query : 1 - 1,208 (1,208/1,261)
11 exons
identity = 0.977
3'(0.955)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000008853
(
AK025579
)
genome : 2,952,347 - 2,957,034 (4,688)
query : 1 - 2,473 (2,473/2,513)
5 exons
identity = 0.911
3'(0.967;0.991;0.974;0.439;0.974)5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000009177
(
AK025903
)
genome : 2,952,343 - 2,956,168 (3,826)
query : 1 - 1,611 (1,611/1,627)
5 exons
identity = 0.873
3'(0.968;0.991;0.974;0.439;0.959)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig
2941395-2957394 F +
AluSx
AluJo
MER21A
MER21A
AluMacYa3
MER21A
AluSg
AluSx
AluY
(CGGGG)n
MIRb
MIRb
FAM
MIRb
MER5A
AT_rich
THER1_MD
MIRb
AluSg/x
MIRb
MER20
L2
L2
L2
AluY
AluY
L2
(GGA)n
L3b
L3b
GA-rich