bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.mulatta
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001117356
Representative transcript
genome : 1,150,527 - 1,162,097 (11,571)
query : 1 - 763 (763/763)
8 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000330518
Pan
sp. (Chimpanzee) : ENSPTRT00000018721
Pongo
sp. (Orangutan) : CR861249
Mus
sp. (Mouse) : AK003132
Rattus
sp. (Rat) : BC086574
Canis
sp. (Dog) : XM_533960
Equus
sp. (Horse) : XM_001503789
Bos
sp. (Cow) : BC109716
Monodelphis
sp. (Opossum) : XM_001373213
Gallus
sp. (Chicken) : XM_001234053
Danio
sp. (Zebrafish) : BC056291
Oryzias
sp. (Medaka) : ENSORLT00000010328
Tetraodon
sp. (Tetraodon) : CR661219
Takifugu
sp. (Fugu) : SINFRUT00000157736
ENSMMUT00000004310
genome : 1,150,527 - 1,162,093 (11,567)
query : 1 - 759 (759/759)
8 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000004308
genome : 1,154,126 - 1,162,093 (7,968)
query : 1 - 729 (729/729)
7 exons
identity = 0.992
5'(1.000;0.979)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001117362
Representative transcript
genome : 1,163,615 - 1,170,241 (6,627)
query : 1 - 1,331 (1,331/1,331)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000302135
Pan
sp. (Chimpanzee) : XM_001172605
Pongo
sp. (Orangutan) : ENSPPYT00000010868
Mus
sp. (Mouse) : AK140688
Rattus
sp. (Rat) : J03588
Canis
sp. (Dog) : XM_542203
Equus
sp. (Horse) : ENSECAT00000009900
Bos
sp. (Cow) : BC109825
Monodelphis
sp. (Opossum) : ENSMODT00000033775
Gallus
sp. (Chicken) : XM_001234062
Danio
sp. (Zebrafish) : BC107607
Oryzias
sp. (Medaka) : ENSORLT00000010343
Tetraodon
sp. (Tetraodon) : CR727851
Takifugu
sp. (Fugu) : SINFRUT00000157734
ENSMMUT00000004312
genome : 1,163,752 - 1,168,004 (4,253)
query : 1 - 705 (705/705)
6 exons
identity = 0.994
3'(1.000;1.000;1.000;1.000;0.978;0.995)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000004313
genome : 1,165,016 - 1,168,004 (2,989)
query : 1 - 856 (856/856)
5 exons
identity = 0.995
3'(1.000;1.000;1.000;0.978;0.995)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000017036
(
AK092169
)
genome : 1,150,508 - 1,162,093 (11,586)
query : 10 - 3,089 (3,080/3,089)
7 exons
identity = 0.895
5'(0.871;0.887)3'
coverage = 0.997
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000048586
(
AK128713
)
genome : 1,150,515 - 1,162,093 (11,579)
query : 2 - 3,356 (3,355/3,356)
6 exons
identity = 0.896
5'(0.870;0.887)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000047632
(
AK127759
)
genome : 1,150,528 - 1,162,093 (11,566)
query : 1 - 3,869 (3,869/3,869)
7 exons
identity = 0.792
5'(0.866;0.894)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000016490
(
AK091623
)
genome : 1,150,528 - 1,162,089 (11,562)
query : 1 - 2,817 (2,817/2,818)
8 exons
identity = 0.894
5'(0.870;0.887)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000330518
(
AK222738
)
genome : 1,150,531 - 1,162,093 (11,563)
query : 1 - 758 (758/775)
8 exons
identity = 0.955
5'(0.989;0.907)3'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000015891
(
AK091024
)
genome : 1,154,312 - 1,162,093 (7,782)
query : 1 - 3,050 (3,050/3,050)
7 exons
identity = 0.891
5'(0.869;0.886)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000015913
(
AK091046
)
genome : 1,158,123 - 1,162,093 (3,971)
query : 1 - 3,743 (3,743/3,743)
3 exons
identity = 0.891
5'(0.916;0.868;0.884)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000046566
(
AK126693
)
genome : 1,158,455 - 1,162,957 (4,503)
query : 1 - 3,571 (3,571/3,571)
4 exons
identity = 0.900
3'(0.922;0.894;0.850;0.903)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000012675
(
AK056061
)
genome : 1,159,764 - 1,162,086 (2,323)
query : 18 - 2,179 (2,162/2,179)
2 exons
identity = 0.876
5'(0.865;0.885)3'
coverage = 0.992
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000302135
(
CR622940
)
genome : 1,163,610 - 1,168,071 (4,462)
query : 1 - 923 (923/1,029)
6 exons
identity = 0.947
3'(0.920;0.964;0.971;0.969;0.966;0.948)5'
coverage = 0.897
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig
1158928-1174927 F +
L1MB7
MER53
CT-rich
CT-rich
G-rich
AluSx
(T)n
AluJo
G-rich
MIR
FLAM_C
AluMacYb4
MIR
L2
AluSx
AluY
AluJo
AluSx
L1MB3
Alu
AluSx
AluY
AluY
L1MB4
Alu
AluMacYa3
AluSx
AluSx
FLAM_C
AluJo
FRAM
AluY
AluMacYa3
AluSx
MER20