bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.mulatta
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSMMUT00000011476
genome : 89,408,184 - 89,712,646 (304,463)
query : 1 - 917 (917/917)
4 exons
identity = 0.995
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001089800
genome : 89,408,189 - 90,029,149 (620,961)
query : 1 - 924 (924/924)
4 exons
identity = 0.978
3'()5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000032048
genome : 89,408,392 - 89,693,859 (285,468)
query : 1 - 708 (708/708)
5 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000029842
genome : 89,408,392 - 89,640,872 (232,481)
query : 1 - 714 (714/714)
4 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
L13314
genome : 89,408,406 - 90,279,715 (871,310)
query : 1 - 499 (499/499)
3 exons
identity = 0.962
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
L13311
genome : 89,408,406 - 90,110,648 (702,243)
query : 1 - 502 (502/502)
4 exons
identity = 0.952
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
L13308
genome : 89,408,406 - 89,927,661 (519,256)
query : 1 - 607 (607/607)
3 exons
identity = 0.954
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
L13312
genome : 89,408,406 - 89,927,661 (519,256)
query : 1 - 607 (607/607)
3 exons
identity = 0.979
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
L13309
genome : 89,408,406 - 89,846,714 (438,309)
query : 1 - 607 (607/607)
3 exons
identity = 0.985
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
L13313
genome : 89,408,406 - 89,712,431 (304,026)
query : 1 - 607 (607/607)
4 exons
identity = 0.962
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
L13315
genome : 89,408,406 - 89,712,431 (304,026)
query : 1 - 607 (607/607)
3 exons
identity = 0.951
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
L13316
genome : 89,408,406 - 89,712,431 (304,026)
query : 1 - 607 (607/607)
3 exons
identity = 0.964
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
L13317
genome : 89,408,406 - 89,712,431 (304,026)
query : 1 - 607 (607/607)
3 exons
identity = 0.977
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
AJ619771
genome : 89,408,437 - 89,712,431 (303,995)
query : 1 - 579 (579/579)
3 exons
identity = 0.964
3'()5'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000006397
genome : 89,408,688 - 89,712,483 (303,796)
query : 1 - 380 (380/380)
3 exons
identity = 0.979
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000018104
genome : 89,412,544 - 89,693,630 (281,087)
query : 1 - 323 (323/323)
3 exons
identity = 0.994
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001094985
Representative transcript
genome : 89,436,953 - 89,437,895 (943)
query : 1 - 729 (729/729)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000244018
Pan
sp. (Chimpanzee) : ENSPTRT00000022628
Pongo
sp. (Orangutan) : ENSPPYT00000014153
Mus
sp. (Mouse) : U97570
Rattus
sp. (Rat) : ENSRNOT00000033914
Canis
sp. (Dog) : XM_849668
Equus
sp. (Horse) : ENSECAT00000001718
Monodelphis
sp. (Opossum) : ENSMODT00000016627
Takifugu
sp. (Fugu) : SINFRUT00000180016
ENSMMUT00000011633
genome : 89,436,957 - 89,437,895 (939)
query : 1 - 725 (725/725)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000017682
(
AK092815
)
genome : 89,408,190 - 90,256,012 (847,823)
query : 2 - 1,908 (1,907/1,908)
4 exons
identity = 0.887
3'()5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000021793
(
AK096938
)
genome : 89,408,190 - 90,256,013 (847,824)
query : 1 - 944 (944/944)
4 exons
identity = 0.904
3'()5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000021897
(
AK097042
)
genome : 89,408,190 - 90,256,012 (847,823)
query : 2 - 1,810 (1,809/1,810)
6 exons
identity = 0.820
3'()5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000048397
(
AK128524
)
genome : 89,408,190 - 90,166,303 (758,114)
query : 1 - 4,067 (4,067/4,067)
4 exons
identity = 0.910
3'()5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000049078
(
AK129807
)
genome : 89,408,190 - 90,166,302 (758,113)
query : 1 - 938 (938/938)
4 exons
identity = 0.909
3'()5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000196071
(
M63438
)
genome : 89,408,190 - 90,029,136 (620,947)
query : 1 - 1,244 (1,244/1,244)
6 exons
identity = 0.904
3'()5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000022207
(
AK097353
)
genome : 89,408,190 - 89,846,952 (438,763)
query : 1 - 929 (929/929)
4 exons
identity = 0.871
3'()5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000049088
(
AK129817
)
genome : 89,408,190 - 89,846,951 (438,762)
query : 1 - 928 (928/928)
4 exons
identity = 0.919
3'()5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000049050
(
AK129779
)
genome : 89,408,190 - 89,535,284 (127,095)
query : 57 - 946 (890/946)
3 exons
identity = 0.832
3'()5'
coverage = 0.941
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000048511
(
AK128638
)
genome : 89,409,539 - 89,535,284 (125,746)
query : 53 - 3,450 (3,398/3,450)
2 exons
identity = 0.909
3'()5'
coverage = 0.985
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000048398
(
AK128525
)
genome : 89,409,638 - 90,029,168 (619,531)
query : 1 - 3,396 (3,396/3,396)
5 exons
identity = 0.886
3'()5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000022187
(
AK097333
)
genome : 89,411,390 - 90,029,169 (617,780)
query : 2 - 1,899 (1,898/1,899)
4 exons
identity = 0.811
3'()5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000017620
(
AK092753
)
genome : 89,411,397 - 89,535,284 (123,888)
query : 58 - 1,820 (1,763/1,820)
3 exons
identity = 0.836
3'()5'
coverage = 0.969
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000244018
(
AJ004956
)
genome : 89,436,971 - 89,437,893 (923)
query : 1 - 709 (709/711)
2 exons
identity = 0.931
5'(0.929;0.931)3'
coverage = 0.997
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig
89429424-89445423 F +
L1PB4
THE1B
L1P
MIRb
L2
MER5B
MER96B
AluSx
AluJb
Alu
A-rich
L2
LTR67
MER4A1_
LTR67
AT_rich
MIR3
MLT1I
MLT1J1
(TA)n
L1MA2
AluY
L1PA7
L1P3
AT_rich
AluSx
FLAM
AT_rich
(TG)n
MER44A
(TA)n