bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.mulatta
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XR_011143
Representative transcript
genome : 15,714,448 - 15,986,234 (271,787)
query : 1 - 6,492 (6,492/6,492)
30 exons
identity = 0.997
5'(0.930;1.000;0.914;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000388793
Pan
sp. (Chimpanzee) : XR_023379
Pongo
sp. (Orangutan) : ENSPPYT00000005141
Mus
sp. (Mouse) : BC052743
Rattus
sp. (Rat) : U28938
Canis
sp. (Dog) : XM_543791
Equus
sp. (Horse) : XM_001916827
Bos
sp. (Cow) : XM_614266
Monodelphis
sp. (Opossum) : XM_001367047
Gallus
sp. (Chicken) : U65891
Tetraodon
sp. (Tetraodon) : GSTENT00011570001
Takifugu
sp. (Fugu) : SINFRUT00000167446
ENSMMUT00000028734
genome : 15,872,284 - 15,912,891 (40,608)
query : 1 - 2,004 (2,004/2,004)
15 exons
identity = 0.965
5'(0.938;0.810;0.992;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000028733
genome : 15,939,746 - 15,983,862 (44,117)
query : 1 - 1,218 (1,218/1,218)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000047133
genome : 15,939,746 - 15,983,862 (44,117)
query : 1 - 1,134 (1,134/1,134)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001091077
Representative transcript
genome : 16,013,768 - 16,183,672 (169,905)
query : 1 - 4,345 (4,345/4,345)
24 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.976;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000218087
Pan
sp. (Chimpanzee) : ENSPTRT00000008744
Pongo
sp. (Orangutan) : CR861274
Mus
sp. (Mouse) : AK166156
Rattus
sp. (Rat) : XM_232499
Canis
sp. (Dog) : ENSCAFT00000020206
Equus
sp. (Horse) : XM_001501834
Monodelphis
sp. (Opossum) : XM_001366998
Gallus
sp. (Chicken) : BX931376
Danio
sp. (Zebrafish) : ENSDART00000099381
Takifugu
sp. (Fugu) : SINFRUT00000175333
ENSMMUT00000028736
genome : 16,013,797 - 16,182,831 (169,035)
query : 1 - 3,872 (3,872/3,872)
21 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000047132
genome : 16,013,797 - 16,182,813 (169,017)
query : 1 - 3,711 (3,711/3,711)
20 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.976;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001092419
genome : 16,287,727 - 16,309,308 (21,582)
query : 1 - 1,881 (1,881/1,881)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001092305
genome : 16,287,727 - 16,307,542 (19,816)
query : 1 - 1,975 (1,975/1,975)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
AB171592
Representative transcript
genome : 16,287,780 - 16,309,240 (21,461)
query : 1 - 1,800 (1,800/1,800)
9 exons
identity = 0.953
5'(0.995;1.000;1.000;0.986)3'
coverage = 1.000
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000260308
Pan
sp. (Chimpanzee) : XM_520769
Pongo
sp. (Orangutan) : ENSPPYT00000005143
Mus
sp. (Mouse) : AF096285
Rattus
sp. (Rat) : BC083714
Canis
sp. (Dog) : XM_543790
Equus
sp. (Horse) : XM_001497473
Bos
sp. (Cow) : BC119959
Monodelphis
sp. (Opossum) : XM_001363774
Gallus
sp. (Chicken) : AJ719901
Danio
sp. (Zebrafish) : BC049525
Oryzias
sp. (Medaka) : ENSORLT00000012491
Tetraodon
sp. (Tetraodon) : CR680319
Takifugu
sp. (Fugu) : SINFRUT00000176838
ENSMMUT00000018682
genome : 16,288,072 - 16,303,630 (15,559)
query : 1 - 790 (790/795)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.994
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000388793
(
BC126201
)
genome : 15,714,720 - 15,986,235 (271,516)
query : 1 - 5,147 (5,147/5,147)
26 exons
identity = 0.894
5'(0.297;1.000;0.987;0.983;0.993;0.985;1.000;
0.971;1.000;1.000;1.000;1.000;0.987;0.985;
0.976;0.974;0.963;0.983;0.957)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000218087
(
U12535
)
genome : 16,013,797 - 16,182,791 (168,995)
query : 1 - 3,832 (3,832/3,832)
21 exons
identity = 0.972
3'(0.961;0.985;0.978;0.969;1.000;0.982;0.963;
0.984;0.973;0.987;0.989;0.969;0.986;0.971;
0.976;0.980;0.952;1.000;0.974;0.988;0.979)5'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000260308
(
BC062306
)
genome : 16,287,772 - 16,309,303 (21,532)
query : 1 - 1,860 (1,860/1,879)
9 exons
identity = 0.932
5'(0.976;1.000;1.000;0.973)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig
15898720-16298719 F +