bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.mulatta
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001106159
genome : 176,961,395 - 176,993,933 (32,539)
query : 1 - 1,016 (1,016/1,016)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001106226
Representative transcript
genome : 176,995,401 - 177,052,708 (57,308)
query : 1 - 3,663 (3,663/3,663)
22 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.976;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000058481
Pan
sp. (Chimpanzee) : XM_518158
Pongo
sp. (Orangutan) : CR860031
Mus
sp. (Mouse) : BC031928
Rattus
sp. (Rat) : BC098630
Canis
sp. (Dog) : XM_531883
Equus
sp. (Horse) : ENSECAT00000010051
Bos
sp. (Cow) : BC123624
Monodelphis
sp. (Opossum) : XM_001381125
Gallus
sp. (Chicken) : ENSGALT00000022352
Danio
sp. (Zebrafish) : DQ173929
Oryzias
sp. (Medaka) : ENSORLT00000006471
Tetraodon
sp. (Tetraodon) : GSTENT00004293001
Takifugu
sp. (Fugu) : SINFRUT00000157106
ENSMMUT00000002443
genome : 176,995,401 - 177,049,577 (54,177)
query : 1 - 3,025 (3,025/3,025)
19 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.976;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
AB045988
Representative transcript
genome : 177,050,560 - 177,051,690 (1,131)
query : 6 - 1,144 (1,139/1,144)
1 exon
identity = 0.968
5'(0.968)3'
coverage = 0.996
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000058481
(
AB016789
)
genome : 176,995,412 - 177,049,573 (54,162)
query : 3 - 3,012 (3,010/3,014)
19 exons
identity = 0.951
3'(0.936;0.957;0.970;0.938;1.000;0.962;0.975;
0.949;0.938;0.952;0.992;0.962;0.935;0.978;
1.000;0.968;0.929;0.972;0.846)5'
coverage = 0.999
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000005781
(
AK022507
)
genome : 176,995,411 - 177,049,573 (54,163)
query : 14 - 3,024 (3,011/3,024)
19 exons
identity = 0.950
3'(0.932;0.963;0.970;0.938;1.000;0.962;0.975;
0.949;0.938;0.952;0.983;0.962;0.935;0.978;
1.000;0.968;0.929;0.963;0.846)5'
coverage = 0.996
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000003716
(
AK001242
)
genome : 176,995,411 - 177,012,321 (16,911)
query : 9 - 1,966 (1,958/1,966)
9 exons
identity = 0.949
3'(0.933;0.957;0.970;0.938;1.000;0.962;0.975;
0.949;0.939)5'
coverage = 0.996
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig
176984054-177064053 F +