bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.mulatta
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XM_001082330
Representative transcript
genome : 120,374,175 - 120,395,409 (21,235)
query : 1 - 801 (801/801)
3 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000030049
genome : 120,395,492 - 120,548,496 (153,005)
query : 1 - 3,816 (3,816/3,816)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001082449
Representative transcript
genome : 120,395,516 - 120,549,348 (153,833)
query : 1 - 4,821 (4,821/4,821)
20 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.917;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000027082
Pan
sp. (Chimpanzee) : XM_517433
Mus
sp. (Mouse) : AK160155
Rattus
sp. (Rat) : BC081895
Canis
sp. (Dog) : XM_533293
Equus
sp. (Horse) : XM_001501711
Bos
sp. (Cow) : ENSBTAT00000016102
Monodelphis
sp. (Opossum) : XM_001365068
Gallus
sp. (Chicken) : CR406827
Danio
sp. (Zebrafish) : BC134187
Oryzias
sp. (Medaka) : ENSORLT00000022475
Tetraodon
sp. (Tetraodon) : GSTENT00029916001
Takifugu
sp. (Fugu) : SINFRUT00000134843
ENSMMUT00000030048
genome : 120,408,440 - 120,548,496 (140,057)
query : 1 - 3,823 (3,823/3,823)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000030050
genome : 120,454,516 - 120,554,226 (99,711)
query : 1 - 1,492 (1,492/1,492)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000041792
genome : 120,512,563 - 120,554,226 (41,664)
query : 1 - 1,386 (1,386/1,386)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000005823
genome : 120,512,596 - 120,553,913 (41,318)
query : 1 - 1,178 (1,178/1,178)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000030051
genome : 120,536,457 - 120,547,356 (10,900)
query : 1 - 583 (583/603)
4 exons
identity = 0.993
5'(1.000;0.972;1.000;1.000)3'
coverage = 0.967
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMMUT00000041791
genome : 120,536,578 - 120,548,496 (11,919)
query : 1 - 1,606 (1,606/1,606)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000017631
(
AK092764
)
genome : 120,395,492 - 120,511,890 (116,399)
query : 1 - 1,886 (1,886/1,891)
12 exons
identity = 0.977
5'(0.922;0.932;0.983;0.960;0.979;0.994;0.993;
0.983;0.965;0.983;1.000;0.981)3'
coverage = 0.997
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000027082
(
AL832170
)
genome : 120,395,528 - 120,441,711 (46,184)
query : 2 - 2,709 (2,708/2,830)
9 exons
identity = 0.962
5'(0.926;0.949;0.983;0.960;0.993;0.986;0.988;
0.993;0.954)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
pHIT000008695
genome : 120,396,249 - 120,401,589 (5,341)
query : 1 - 345 (345/345)
2 exons
identity = 0.962
5'(0.964;0.957)3'
coverage = 1.000
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000003714
(
AK001240
)
genome : 120,411,900 - 120,454,749 (42,850)
query : 21 - 1,624 (1,604/1,624)
8 exons
identity = 0.978
5'(0.925;0.993;0.986;0.982;0.993;0.983;0.965;
0.983)3'
coverage = 0.988
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000010438
(
AK027164
)
genome : 120,511,815 - 120,548,497 (36,683)
query : 1 - 2,007 (2,007/2,098)
7 exons
identity = 0.969
5'(1.000;0.981;0.981;1.000;0.991;0.977;0.958)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000023267
(
AK098437
)
genome : 120,536,578 - 120,548,496 (11,919)
query : 1 - 1,604 (1,604/1,604)
4 exons
identity = 0.963
5'(0.981;1.000;0.977;0.957)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig
120392432-120552431 F +