bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.mulatta
H.sapiens
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
XR_012525
Representative transcript
genome : 19,934,814 - 19,936,453 (1,640)
query : 1 - 1,640 (1,640/1,640)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
XR_010782
Representative transcript
genome : 19,945,116 - 20,000,252 (55,137)
query : 1 - 2,247 (2,247/2,247)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000058537
Pan
sp. (Chimpanzee) : XM_513116
Pongo
sp. (Orangutan) : ENSPPYT00000002163
Mus
sp. (Mouse) : AK137625
Rattus
sp. (Rat) : AB010999
Canis
sp. (Dog) : ENSCAFT00000035689
Equus
sp. (Horse) : ENSECAT00000011664
Bos
sp. (Cow) : XM_584904
Monodelphis
sp. (Opossum) : ENSMODT00000003331
Gallus
sp. (Chicken) : XM_425729
Oryzias
sp. (Medaka) : ENSORLT00000009420
ENSMMUT00000031552
genome : 19,945,116 - 19,970,715 (25,600)
query : 1 - 597 (597/597)
4 exons
identity = 0.977
5'(1.000;1.000;1.000;0.948)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001089244
Representative transcript
genome : 20,008,853 - 20,039,178 (30,326)
query : 1 - 2,385 (2,385/2,385)
16 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000331821
Pan
sp. (Chimpanzee) : XM_524564
Pongo
sp. (Orangutan) : ENSPPYT00000002162
Mus
sp. (Mouse) : BC053724
Rattus
sp. (Rat) : ENSRNOT00000055867
Canis
sp. (Dog) : AY682099
Equus
sp. (Horse) : XM_001488531
Bos
sp. (Cow) : BC147911
Danio
sp. (Zebrafish) : ENSDART00000064842
Oryzias
sp. (Medaka) : ENSORLT00000009454
Takifugu
sp. (Fugu) : SINFRUT00000134773
ENSMMUT00000031560
genome : 20,008,853 - 20,038,999 (30,147)
query : 1 - 2,206 (2,206/2,206)
16 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
HIT000010184
(
AK026910
)
genome : 19,531,972 - 20,055,195 (523,224)
query : 1 - 1,861 (1,861/1,883)
9 exons
identity = 0.874
5'()3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000439023
(
DQ572492
)
genome : 19,938,418 - 19,938,446 (29)
query : 1 - 29 (29/30)
1 exon
identity = 0.931
3'(0.931)5'
coverage = 0.967
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000058537
(
AB017919
)
genome : 19,945,090 - 20,000,251 (55,162)
query : 1 - 2,263 (2,263/2,263)
14 exons
identity = 0.896
5'(0.958;0.978;0.940;0.926;0.958;0.770;0.670;
0.963;0.955;0.945;0.981;0.972;0.946;0.950)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
HIT000331821
(
AY443100
)
genome : 20,008,853 - 20,039,178 (30,326)
query : 2 - 2,397 (2,396/2,397)
16 exons
identity = 0.949
5'(0.946;0.961;0.918)3'
coverage = 1.000
H-InvDB(Advanced Search)
H-InvDB(Topic Annotation)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
Evola CSM: cross-species mapping view
Contig
19932684-20012683 F +