bases per tick :
2000
1000
500
200
100
50
20
10
5
2
kb first site :
homology :
M.domestica
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
ENSMODT00000005326
Representative transcript
genome : 215,643,434 - 215,661,321 (17,888)
query : 1 - 3,726 (3,726/3,726)
22 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000329093
Pan
sp. (Chimpanzee) : XR_022958
Pongo
sp. (Orangutan) : CR858074
Macaca
sp. (Macaque) : XM_001103478
Mus
sp. (Mouse) : AK145930
Rattus
sp. (Rat) : J05166
Canis
sp. (Dog) : XM_532761
Equus
sp. (Horse) : AY457176
Bos
sp. (Cow) : AF176109
Danio
sp. (Zebrafish) : DQ287972
Oryzias
sp. (Medaka) : ENSORLT00000008673
Oryzias
sp. (Medaka) : ENSORLT00000015230
Tetraodon
sp. (Tetraodon) : GSTENT00031825001
Takifugu
sp. (Fugu) : SINFRUT00000167732
ENSMODT00000005330
genome : 215,649,877 - 215,661,065 (11,189)
query : 1 - 2,801 (2,801/2,801)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
ENSMODT00000005319
genome : 215,649,877 - 215,661,057 (11,181)
query : 1 - 2,667 (2,667/2,667)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001371490
Representative transcript
genome : 215,665,393 - 215,666,890 (1,498)
query : 1 - 945 (945/945)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000030015
Pan
sp. (Chimpanzee) : XM_001137890
Pongo
sp. (Orangutan) : ENSPPYT00000021197
Macaca
sp. (Macaque) : XM_001103049
Mus
sp. (Mouse) : AB030183
Rattus
sp. (Rat) : BC059162
Canis
sp. (Dog) : XM_848553
Equus
sp. (Horse) : ENSECAT00000022109
Bos
sp. (Cow) : BC103270
Danio
sp. (Zebrafish) : BC065312
Oryzias
sp. (Medaka) : ENSORLT00000008693
Tetraodon
sp. (Tetraodon) : CR683531
ENSMODT00000005342
genome : 215,665,716 - 215,666,899 (1,184)
query : 1 - 747 (747/747)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
XM_001371534
Representative transcript
genome : 215,673,365 - 215,750,758 (77,394)
query : 1 - 2,619 (2,619/2,619)
21 exons
identity = 0.993
5'(1.000;0.973)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
Ortholog candidate
H.sapiens
(Human) : HIT000078332
Pan
sp. (Chimpanzee) : XR_022969
Pongo
sp. (Orangutan) : ENSPPYT00000021198
Macaca
sp. (Macaque) : AB174183
Mus
sp. (Mouse) : AF459091
Rattus
sp. (Rat) : XM_001060957
Canis
sp. (Dog) : ENSCAFT00000007689
Equus
sp. (Horse) : XM_001495140
Bos
sp. (Cow) : XM_868297
Gallus
sp. (Chicken) : XR_026639
Oryzias
sp. (Medaka) : ENSORLT00000021908
Tetraodon
sp. (Tetraodon) : GSTENT00016165001
Takifugu
sp. (Fugu) : SINFRUT00000129659
ENSMODT00000005465
genome : 215,673,461 - 215,750,755 (77,295)
query : 1 - 2,607 (2,607/2,607)
19 exons
identity = 0.995
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
Contig
215658141-215674140 F +
L2
MIR3_MarsA
MIR3
SINE1_Mdo
MIR3_MarsA
MIRc
OposCharlie4a
MIR3
SINE1a_Mdo
Charlie4a_Marsup
MIR3_MarsA
SINE1_Mdo
SINE1a_Mdo
MIRc
L1_Mdo3c
MIR_Mars
SINE1_Mdo
MIR3
(TTCA)n
THER1_MD
G-rich
GC_rich
GC_rich