bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0093701
HIT000643838 (
ENST00000544793
)
(Transcription regulator Myc family protein.)
genome : 106,515,812 - 106,516,888 (1,077)
query : 1 - 1,068 (1,068/1,068)
1 exon
identity = 0.992
5'(0.992)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0093701)
HIX0093701
HIT000353731 (
ENST00000372451
)
(Transcription regulator Myc family protein.)
genome : 106,515,812 - 106,516,886 (1,075)
query : 1 - 1,075 (1,075/1,075)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0093701)
HIX0148523
HIT000482489 (
ENST00000399417
)
(Heat shock protein DnaJ, cysteine-rich domain containing protein.)
genome : 106,594,880 - 106,596,073 (1,194)
query : 1 - 1,194 (1,194/1,194)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 13.5, cyto_nucl 7.5, extr_plas 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0148523)
HIX0131766
HIT000525017 (
ENST00000427083
)
(Intermediate filament protein family protein.)
genome : 106,671,860 - 106,672,691 (832)
query : 1 - 832 (832/832)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 20.5, nucl 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0131766)
HIX0131766
HIT000471021_06 (
ENST00000385122
)
(Non-protein coding transcript.)
genome : 106,672,219 - 106,672,309 (91)
query : 2 - 92 (91/92)
1 exon
identity = 0.967
5'(0.967)3'
coverage = 0.989
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0131766)
HIX0131766
HIT000471019_01 (
ENST00000385111
)
(Non-protein coding transcript.)
genome : 106,672,219 - 106,672,309 (91)
query : 1 - 91 (91/91)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0131766)
HIX0176955
HIT000513186 (
ENST00000415252
)
(Hypothetical protein.)
genome : 106,756,213 - 106,789,051 (32,839)
query : 1 - 457 (457/457)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, mito 11, cyto_nucl 9, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0176955)
HIX0016975
HIT000111402 (
ENST00000276185
)
(FERM and PDZ domain-containing protein 3;)
genome : 106,765,680 - 106,846,603 (80,924)
query : 1 - 5,433 (5,433/5,433)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016975)
HIX0016975
HIT000537488 (
ENST00000439554
)
(FERM and PDZ domain-containing protein 3;)
genome : 106,769,876 - 106,848,481 (78,606)
query : 1 - 7,155 (7,155/7,155)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016975)
HIX0148190
HIT000448783
(
DQ582252
)
Representative transcript
(Non-protein coding transcript.)
genome : 106,771,517 - 106,771,546 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0148190)
HIX0016975
HIT000581927 (
ENST00000477796
)
(FERM and PDZ domain-containing protein 3;)
genome : 106,787,813 - 106,798,427 (10,615)
query : 1 - 2,312 (2,312/2,312)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, mito 10, cyto_nucl 8.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016975)
HIX0016975
HIT000001532
(
AB058720
)
Representative transcript
(FERM and PDZ domain-containing protein 3;)
genome : 106,843,618 - 106,848,479 (4,862)
query : 66 - 4,928 (4,863/4,928)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.987
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016975)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK047241
Canis
sp. (Dog) : ENSCAFT00000028542
Oryzias
sp. (Medaka) : ENSORLT00000007795
Takifugu
sp. (Fugu) : SINFRUT00000129871
Rattus
sp. (Rat) : XM_001053582
Danio
sp. (Zebrafish) : XM_001338929
Monodelphis
sp. (Opossum) : XM_001378180
Gallus
sp. (Chicken) : XM_426257
Pan
sp. (Chimpanzee) : XM_529094
Macaca
sp. (Macaque) : XR_011017
HIX0016975
HIT000324135
(
X85323
)
(Non-protein coding transcript.)
genome : 106,846,380 - 106,846,681 (302)
query : 1 - 298 (298/298)
1 exon
identity = 0.974
5'(0.974)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016975)
HIX0016976
HIT000199639 (
NM_002764
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,654 - 106,894,256 (22,603)
query : 1 - 2,156 (2,156/2,156)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12, extr 5, E.R. 3, nucl 2.5,
extr_plas 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000657087 (
NM_001204402
)
(Ribose-phosphate pyrophosphokinase 1 isoform 2.)
genome : 106,871,654 - 106,894,256 (22,603)
query : 1 - 1,748 (1,748/1,748)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 11.5, cyto_nucl 9, nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000100411
(
D00860
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,737 - 106,894,256 (22,520)
query : 1 - 2,073 (2,073/2,075)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000842 : Phosphoribosyl pyrophosphate synthetase, conserved site
IPR005946 : Ribose-phosphate diphosphokinase
IPR029057 : Phosphoribosyltransferase-like
IPR029099 : Ribose-phosphate pyrophosphokinase, N-terminal domain
GO :
0000287 : Molecular Function : magnesium ion binding
0004749 : Molecular Function : ribose phosphate diphosphokinase activity
0009156 : Biological Process : ribonucleoside monophosphate biosynthetic process
0009165 : Biological Process : nucleotide biosynthetic process
0044249 : Biological Process : cellular biosynthetic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12, extr 5, E.R. 3, nucl 2.5,
extr_plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000353715 (
ENST00000372435
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,737 - 106,894,256 (22,520)
query : 1 - 2,073 (2,073/2,073)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12, extr 5, E.R. 3, nucl 2.5,
extr_plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000500080
(
AK316467
)
(Ribose-phosphate pyrophosphokinase 1 isoform 2.)
genome : 106,871,740 - 106,894,109 (22,370)
query : 1 - 1,515 (1,515/1,515)
4 exons
identity = 0.999
5'(0.996;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005946 : Ribose-phosphate diphosphokinase
IPR029057 : Phosphoribosyltransferase-like
GO :
0000287 : Molecular Function : magnesium ion binding
0004749 : Molecular Function : ribose phosphate diphosphokinase activity
0009165 : Biological Process : nucleotide biosynthetic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 11.5, cyto_nucl 9, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000426614
(
AK307748
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,740 - 106,893,699 (21,960)
query : 1 - 1,415 (1,415/1,415)
6 exons
identity = 0.999
5'(1.000;1.000;0.992;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005946 : Ribose-phosphate diphosphokinase
IPR029057 : Phosphoribosyltransferase-like
IPR029099 : Ribose-phosphate pyrophosphokinase, N-terminal domain
GO :
0000287 : Molecular Function : magnesium ion binding
0004749 : Molecular Function : ribose phosphate diphosphokinase activity
0009165 : Biological Process : nucleotide biosynthetic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 11.5, extr 6, E.R. 3,
extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000431572
(
AK312706
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,740 - 106,893,262 (21,523)
query : 1 - 1,076 (1,076/1,076)
7 exons
identity = 0.997
5'(1.000;0.995;0.990;1.000;1.000;0.994;1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000842 : Phosphoribosyl pyrophosphate synthetase, conserved site
IPR005946 : Ribose-phosphate diphosphokinase
IPR029057 : Phosphoribosyltransferase-like
IPR029099 : Ribose-phosphate pyrophosphokinase, N-terminal domain
GO :
0000287 : Molecular Function : magnesium ion binding
0004749 : Molecular Function : ribose phosphate diphosphokinase activity
0009156 : Biological Process : ribonucleoside monophosphate biosynthetic process
0009165 : Biological Process : nucleotide biosynthetic process
0044249 : Biological Process : cellular biosynthetic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 11.5, extr 6, E.R. 3,
extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000353708 (
ENST00000372428
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,745 - 106,893,480 (21,736)
query : 1 - 1,218 (1,218/1,218)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12, extr 5, E.R. 3, nucl 2.5,
extr_plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000492592
(
AK297968
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,745 - 106,893,480 (21,736)
query : 1 - 1,218 (1,218/1,218)
8 exons
identity = 0.998
5'(1.000;0.984;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000842 : Phosphoribosyl pyrophosphate synthetase, conserved site
IPR005946 : Ribose-phosphate diphosphokinase
IPR029057 : Phosphoribosyltransferase-like
IPR029099 : Ribose-phosphate pyrophosphokinase, N-terminal domain
GO :
0000287 : Molecular Function : magnesium ion binding
0004749 : Molecular Function : ribose phosphate diphosphokinase activity
0009156 : Biological Process : ribonucleoside monophosphate biosynthetic process
0009165 : Biological Process : nucleotide biosynthetic process
0044249 : Biological Process : cellular biosynthetic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, mito 10, extr 7, cyto_nucl 6.5, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000030512
(
BC001605
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,759 - 106,894,256 (22,498)
query : 1 - 2,051 (2,051/2,078)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000842 : Phosphoribosyl pyrophosphate synthetase, conserved site
IPR005946 : Ribose-phosphate diphosphokinase
IPR029057 : Phosphoribosyltransferase-like
IPR029099 : Ribose-phosphate pyrophosphokinase, N-terminal domain
GO :
0000287 : Molecular Function : magnesium ion binding
0004749 : Molecular Function : ribose phosphate diphosphokinase activity
0009156 : Biological Process : ribonucleoside monophosphate biosynthetic process
0009165 : Biological Process : nucleotide biosynthetic process
0044249 : Biological Process : cellular biosynthetic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12, extr 5, E.R. 3, nucl 2.5,
extr_plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000353699 (
ENST00000372419
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,760 - 106,884,354 (12,595)
query : 1 - 628 (628/628)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, extr 13, cyto_nucl 9.5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000321498
(
X15331
)
Representative transcript
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,793 - 106,893,487 (21,695)
query : 1 - 1,196 (1,196/1,196)
8 exons
identity = 0.993
5'(0.989;0.989;1.000;1.000;1.000;1.000;1.000;
0.976)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000842 : Phosphoribosyl pyrophosphate synthetase, conserved site
IPR005946 : Ribose-phosphate diphosphokinase
IPR029057 : Phosphoribosyltransferase-like
IPR029099 : Ribose-phosphate pyrophosphokinase, N-terminal domain
GO :
0000287 : Molecular Function : magnesium ion binding
0004749 : Molecular Function : ribose phosphate diphosphokinase activity
0009156 : Biological Process : ribonucleoside monophosphate biosynthetic process
0009165 : Biological Process : nucleotide biosynthetic process
0044249 : Biological Process : cellular biosynthetic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12, extr 5, E.R. 3, nucl 2.5,
extr_plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169801
Mus
sp. (Mouse) : AK089009
Rattus
sp. (Rat) : BC078853
Danio
sp. (Zebrafish) : BC124318
Gallus
sp. (Chicken) : CR407240
Pongo
sp. (Orangutan) : CR857159
Oryzias
sp. (Medaka) : ENSORLT00000007817
Takifugu
sp. (Fugu) : SINFRUT00000132009
Monodelphis
sp. (Opossum) : XM_001362789
Equus
sp. (Horse) : XM_001491375
Canis
sp. (Dog) : XM_845760
HIX0016976
HIT000642293 (
ENST00000543248
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,793 - 106,893,487 (21,695)
query : 1 - 1,199 (1,199/1,199)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12, extr 5, E.R. 3, nucl 2.5,
extr_plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000330949
(
AK223169
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,871,837 - 106,893,960 (22,124)
query : 1 - 1,677 (1,677/1,677)
7 exons
identity = 0.999
5'(0.993;1.000;0.990;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000842 : Phosphoribosyl pyrophosphate synthetase, conserved site
IPR005946 : Ribose-phosphate diphosphokinase
IPR029057 : Phosphoribosyltransferase-like
IPR029099 : Ribose-phosphate pyrophosphokinase, N-terminal domain
GO :
0000287 : Molecular Function : magnesium ion binding
0004749 : Molecular Function : ribose phosphate diphosphokinase activity
0009156 : Biological Process : ribonucleoside monophosphate biosynthetic process
0009165 : Biological Process : nucleotide biosynthetic process
0044249 : Biological Process : cellular biosynthetic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12, extr 5, E.R. 3, nucl 2.5,
extr_plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016976
HIT000353698 (
ENST00000372418
)
(Ribose-phosphate pyrophosphokinase 1; EC=2.7.6.1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I;)
genome : 106,882,588 - 106,893,531 (10,944)
query : 1 - 942 (942/942)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.6.1
KEGG pathway :
00030 : Pentose phosphate pathway (39)
00230 : Purine metabolism (100)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, mito 7, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016976)
HIX0016977
HIT000058834
(
AB025432
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,451 - 106,960,274 (3,824)
query : 1 - 1,937 (1,937/2,028)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 0.972
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000072871
(
AF183393
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,459 - 106,960,277 (3,819)
query : 1 - 1,930 (1,930/2,023)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000319140 (
NM_198057
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,956,453 - 107,019,017 (62,565)
query : 1 - 2,267 (2,267/2,312)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000306832
(
CR933650
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,453 - 106,960,292 (3,840)
query : 2 - 1,953 (1,952/1,998)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000200863 (
NM_004089
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,453 - 106,960,291 (3,839)
query : 1 - 1,951 (1,951/1,986)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000365450 (
NM_001015881
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,453 - 106,959,711 (3,259)
query : 1 - 1,746 (1,746/1,781)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14, nucl 9.5, extr 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000056501
(
BX647854
)
Representative transcript
(TSC22 domain family protein 3 isoform 3.)
genome : 106,956,453 - 107,019,202 (62,750)
query : 2 - 2,200 (2,199/2,228)
4 exons
identity = 0.998
3'(0.999;1.000;0.998;0.995)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 2, mito 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB025431
Mus
sp. (Mouse) : AF201289
Danio
sp. (Zebrafish) : BC056586
Tetraodon
sp. (Tetraodon) : CR661738
Pongo
sp. (Orangutan) : CR857595
Oryzias
sp. (Medaka) : ENSORLT00000003760
Takifugu
sp. (Fugu) : SINFRUT00000148063
Macaca
sp. (Macaque) : XM_001095802
Pan
sp. (Chimpanzee) : XM_001141188
Monodelphis
sp. (Opossum) : XM_001375776
Equus
sp. (Horse) : XM_001491157
Canis
sp. (Dog) : XM_549177
HIX0016977
HIT000024457
(
AL110191
)
(TSC22 domain family protein 3 isoform 3.)
genome : 106,956,453 - 106,960,291 (3,839)
query : 1 - 1,949 (1,949/1,968)
3 exons
identity = 0.998
3'(0.999;1.000;0.995)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 11, nucl 9.5, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000264890
(
BC072446
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,453 - 106,960,285 (3,833)
query : 1 - 1,945 (1,945/1,959)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000038297
(
BC018148
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,453 - 106,959,598 (3,146)
query : 1 - 1,633 (1,633/1,647)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14, nucl 9.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000083057
(
AY007119
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,453 - 106,960,190 (3,738)
query : 1 - 1,850 (1,850/1,859)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000074492
(
AF228339
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,451 - 106,960,276 (3,826)
query : 6 - 1,944 (1,939/1,946)
3 exons
identity = 0.996
3'(0.995;1.000;0.997)5'
coverage = 0.996
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000120593 (
ENST00000315660
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,956,451 - 107,019,215 (62,765)
query : 1 - 2,213 (2,213/2,213)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000353677 (
ENST00000372397
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,451 - 106,960,365 (3,915)
query : 1 - 2,027 (2,027/2,027)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000353670 (
ENST00000372390
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,451 - 106,959,775 (3,325)
query : 1 - 1,812 (1,812/1,812)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14, nucl 9.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000353664 (
ENST00000372384
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,956,454 - 107,019,218 (62,765)
query : 1 - 2,199 (2,199/2,199)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000017512
(
AK092645
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,956,454 - 107,019,171 (62,718)
query : 1 - 2,152 (2,152/2,152)
4 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000353663 (
ENST00000372383
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,956,454 - 107,019,017 (62,564)
query : 1 - 2,266 (2,266/2,266)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000017536
(
AK092669
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,956,454 - 107,018,989 (62,536)
query : 1 - 2,238 (2,238/2,238)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000071856
(
AF153603
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,454 - 106,960,269 (3,816)
query : 1 - 1,927 (1,927/1,927)
3 exons
identity = 0.998
3'(0.998;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000047811
(
AK127938
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,956,454 - 106,960,231 (3,778)
query : 1 - 1,890 (1,890/1,890)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000495159
(
AK300535
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,957,214 - 107,018,890 (61,677)
query : 2 - 1,317 (1,316/1,317)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 8, cyto 5, mito 3, cyto_golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000353662 (
ENST00000372382
)
(TSC22 domain family protein 3 isoform 3.)
genome : 106,957,230 - 106,965,502 (8,273)
query : 1 - 1,216 (1,216/1,216)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto 5, cyto_nucl 4.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000606166 (
ENST00000506081
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,957,600 - 107,020,297 (62,698)
query : 1 - 956 (956/956)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000268298
(
CR533450
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,957,664 - 106,960,029 (2,366)
query : 1 - 478 (478/478)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 11, nucl 9.5, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000327521
(
Z50781
)
(TSC22 domain family protein 3 isoform 3.)
genome : 106,957,700 - 106,959,631 (1,932)
query : 1 - 418 (418/420)
3 exons
identity = 0.993
3'(0.996;0.981;0.989)5'
coverage = 0.995
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14, nucl 9.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000613923 (
ENST00000514426
)
(TSC22 domain family protein 3 isoform 3.)
genome : 106,957,717 - 107,020,308 (62,592)
query : 1 - 569 (569/569)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19.5, nucl 17.5, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000430700
(
AK311834
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,957,749 - 106,960,186 (2,438)
query : 1 - 550 (550/550)
3 exons
identity = 0.996
3'(0.996;0.981;1.000)5'
coverage = 1.000
InterPro :
IPR000580 : TSC-22 / Dip / Bun
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000590301 (
ENST00000486554
)
(Conserved hypothetical protein.)
genome : 106,957,907 - 106,959,631 (1,725)
query : 1 - 576 (576/576)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000603799 (
ENST00000503515
)
(TSC22 domain family protein 3; DSIP-immunoreactive peptide; Protein DIP; hDIP; Delta sleep-inducing peptide immunoreactor; Glucocorticoid-induced leucine zipper protein; GILZ; TSC-22-like protein; TSC-22-related protein; TSC-22R;)
genome : 106,959,003 - 106,960,292 (1,290)
query : 1 - 551 (551/551)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 11, nucl 8.5, extr 5, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000614362 (
ENST00000514897
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,959,128 - 107,020,572 (61,445)
query : 1 - 802 (802/802)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 6.5, cyto_nucl 6.5, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000584691 (
ENST00000480691
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,959,133 - 107,020,285 (61,153)
query : 1 - 546 (546/546)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 7.5, cyto_nucl 6.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000610637 (
ENST00000510887
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,959,142 - 107,019,944 (60,803)
query : 1 - 581 (581/581)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 8, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000602984 (
ENST00000502650
)
(TSC22 domain family protein 3 isoform 1.)
genome : 106,959,153 - 107,019,345 (60,193)
query : 1 - 567 (567/567)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, nucl 9, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0028430
HIT000048944
(
AK129673
)
Representative transcript
(Conserved hypothetical protein.)
genome : 106,969,878 - 106,971,156 (1,279)
query : 1 - 1,279 (1,279/1,279)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto_nucl 4, nucl 2.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028430)
HIX0016977
HIT000606775 (
ENST00000506724
)
(TSC22 domain family protein 3 isoform 1.)
genome : 107,018,348 - 107,019,488 (1,141)
query : 1 - 521 (521/521)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000606061 (
ENST00000505965
)
(TSC22 domain family protein 3 isoform 1.)
genome : 107,018,397 - 107,020,567 (2,171)
query : 1 - 425 (425/425)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 11, cyto_nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0016977
HIT000603280 (
ENST00000502961
)
(TSC22 domain family protein 3 isoform 1.)
genome : 107,018,476 - 107,020,559 (2,084)
query : 1 - 503 (503/503)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016977)
HIX0056509
HIT000608892 (
ENST00000509000
)
(Nucleotide-binding alpha-beta plait domain containing protein.)
genome : 107,020,963 - 107,037,689 (16,727)
query : 1 - 437 (437/437)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 8.5, cyto_nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056509)
HIX0056509
HIT000353659 (
ENST00000372379
)
(Nuclear cap-binding protein subunit 2 family protein.)
genome : 107,037,451 - 107,037,912 (462)
query : 1 - 462 (462/462)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 9.5, cyto_nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056509)
HIX0016978
HIT000549857 (
ENST00000451923
)
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,068,985 - 107,084,611 (15,627)
query : 1 - 758 (758/758)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000204003 (
NM_012216
)
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,069,084 - 107,174,867 (105,784)
query : 1 - 7,345 (7,345/7,345)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
0.975;1.000;1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000211454 (
NM_052817
)
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,069,084 - 107,174,867 (105,784)
query : 1 - 7,255 (7,255/7,255)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000108602 (
ENST00000262843
)
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,069,109 - 107,170,423 (101,315)
query : 1 - 2,876 (2,876/2,876)
10 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
0.975;1.000;1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000326098
(
Y18880
)
Representative transcript
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,069,460 - 107,170,421 (100,962)
query : 1 - 2,523 (2,523/2,524)
10 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
0.975;1.000;1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : ENSDART00000003293
Monodelphis
sp. (Opossum) : ENSMODT00000014860
Oryzias
sp. (Medaka) : ENSORLT00000022271
Pongo
sp. (Orangutan) : ENSPPYT00000024046
Tetraodon
sp. (Tetraodon) : GSTENT00031140001
Takifugu
sp. (Fugu) : SINFRUT00000142101
Rattus
sp. (Rat) : XM_001053301
Macaca
sp. (Macaque) : XM_001091577
Pan
sp. (Chimpanzee) : XM_001144794
Equus
sp. (Horse) : XM_001491022
Gallus
sp. (Chicken) : XM_420134
Canis
sp. (Dog) : XM_538133
Mus
sp. (Mouse) : Y18881
HIX0016978
HIT000541902 (
ENST00000443968
)
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,083,899 - 107,170,423 (86,525)
query : 17 - 2,251 (2,235/2,251)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.993
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000073676
(
AF196481
)
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,083,899 - 107,170,421 (86,523)
query : 17 - 2,249 (2,233/2,249)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.993
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000038091
(
BC017707
)
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,083,929 - 107,170,422 (86,494)
query : 1 - 2,204 (2,204/2,218)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000099583
(
BT006663
)
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,083,956 - 107,170,302 (86,347)
query : 1 - 2,057 (2,057/2,058)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000255773
(
AY625004
)
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,083,956 - 107,170,303 (86,348)
query : 1 - 2,058 (2,058/2,058)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016979
HIT000019566
(
AK094711
)
Representative transcript
(Conserved hypothetical protein.)
genome : 107,137,827 - 107,179,210 (41,384)
query : 1 - 2,090 (2,090/2,090)
4 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, extr_plas 12, extr 6, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016979)
HIX0016979
HIT000528074 (
ENST00000430140
)
(Conserved hypothetical protein.)
genome : 107,137,827 - 107,179,210 (41,384)
query : 1 - 2,090 (2,090/2,090)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, extr_plas 12, extr 6, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016979)
HIX0016978
HIT000578804 (
ENST00000474517
)
(Probable E3 ubiquitin-protein ligase MID2; EC=6.3.2.-; Midin-2; Midline defect 2; Midline-2; RING finger protein 60; Tripartite motif-containing protein 1;)
genome : 107,160,732 - 107,169,702 (8,971)
query : 1 - 689 (689/689)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 15, extr 9, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000043680
(
AK123807
)
(Conserved hypothetical protein.)
genome : 107,171,606 - 107,174,865 (3,260)
query : 1 - 3,260 (3,260/3,260)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24.5, extr_plas 14, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000019889
(
AK095034
)
(Conserved hypothetical protein.)
genome : 107,172,748 - 107,174,865 (2,118)
query : 1 - 2,118 (2,118/2,118)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24.5, extr_plas 14, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000093956
(
BC035557
)
(Conserved hypothetical protein.)
genome : 107,173,843 - 107,174,866 (1,024)
query : 12 - 1,035 (1,024/1,051)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.989
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24.5, extr_plas 14, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000259801
(
BC058011
)
(Conserved hypothetical protein.)
genome : 107,173,974 - 107,174,864 (891)
query : 4 - 894 (891/920)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.994
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24.5, extr_plas 14, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0016978
HIT000264325
(
BC070370
)
(Conserved hypothetical protein.)
genome : 107,174,042 - 107,174,866 (825)
query : 1 - 825 (825/868)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24.5, extr_plas 14, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016978)
HIX0177476
HIT000549469 (
ENST00000451535
)
(Conserved hypothetical protein.)
genome : 107,182,493 - 107,182,872 (380)
query : 1 - 380 (380/380)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12, nucl 11, cyto_nucl 8.5, extr 4, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177476)
HIX0056166
HIT000076284
(
AF285598
)
Representative transcript
(Testis-expressed sequence 13B protein;)
genome : 107,224,094 - 107,225,600 (1,507)
query : 1 - 1,247 (1,247/1,247)
3 exons
identity = 0.998
3'(0.996;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028193 : Testis-expressed sequence 13 protein family
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 10.5, mito 9, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056166)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK006452
Bos
sp. (Cow) : ENSBTAT00000012442
Macaca
sp. (Macaque) : ENSMMUT00000047857
Pongo
sp. (Orangutan) : ENSPPYT00000024047
Pan
sp. (Chimpanzee) : ENSPTRT00000041276
Canis
sp. (Dog) : XM_549178
HIX0056166
HIT000116298 (
ENST00000302917
)
(Testis-expressed sequence 13B protein;)
genome : 107,224,094 - 107,225,600 (1,507)
query : 1 - 1,248 (1,248/1,248)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 10.5, mito 9, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056166)
HIX0056166
HIT000210099 (
NM_031273
)
(Testis-expressed sequence 13B protein;)
genome : 107,224,094 - 107,225,600 (1,507)
query : 1 - 1,248 (1,248/1,248)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 10.5, mito 9, nucl 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056166)
HIX0056166
HIT000435683
(
BC150140
)
(Testis-expressed sequence 13B protein;)
genome : 107,224,103 - 107,225,589 (1,487)
query : 1 - 1,487 (1,487/1,487)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
InterPro :
IPR028193 : Testis-expressed sequence 13 protein family
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10, nucl 9.5, cyto 9.5, mito 9.5,
E.R._mito 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056166)
HIX0028376
HIT000057305
(
BX648658
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,200 - 107,322,414 (34,215)
query : 1 - 3,128 (3,128/3,145)
7 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.993)3'
coverage = 1.000
InterPro :
IPR000920 : Myelin P0 protein related
IPR003598 : Immunoglobulin subtype 2
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, pero 3, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000318682 (
NM_182607
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,200 - 107,322,414 (34,215)
query : 1 - 3,128 (3,128/3,145)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, pero 3, extr 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000513364 (
ENST00000415430
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,200 - 107,322,414 (34,215)
query : 1 - 3,236 (3,236/3,236)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000654625 (
NM_001170553
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,200 - 107,322,414 (34,215)
query : 1 - 3,236 (3,236/3,236)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000496407
(
AK301783
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,201 - 107,320,765 (32,565)
query : 1 - 1,478 (1,478/1,478)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;0.994;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R._mito 8.5, mito 7.5, plas 6, extr 5, cyto_plas 5,
E.R. 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000052785
(
BC043216
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,244 - 107,322,327 (34,084)
query : 1 - 2,997 (2,997/3,012)
7 exons
identity = 0.990
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.986)3'
coverage = 1.000
InterPro :
IPR000920 : Myelin P0 protein related
IPR003598 : Immunoglobulin subtype 2
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, pero 3, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000103250 (
ENST00000217957
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,244 - 107,322,327 (34,084)
query : 1 - 2,997 (2,997/2,997)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, pero 3, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000055459
(
BX640913
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,286 - 107,322,327 (34,042)
query : 1 - 2,955 (2,955/3,010)
7 exons
identity = 0.994
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.992)3'
coverage = 1.000
InterPro :
IPR000920 : Myelin P0 protein related
IPR003598 : Immunoglobulin subtype 2
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, pero 3, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000434712
(
AK315846
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,295 - 107,320,701 (32,407)
query : 1 - 1,320 (1,320/1,320)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000920 : Myelin P0 protein related
IPR003598 : Immunoglobulin subtype 2
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, pero 3, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000556317 (
ENST00000458383
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,295 - 107,310,348 (22,054)
query : 1 - 570 (570/570)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, plas 5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000495935
(
AK301311
)
Representative transcript
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,300 - 107,320,833 (32,534)
query : 1 - 1,555 (1,555/1,555)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK132956
Rattus
sp. (Rat) : BC098943
Bos
sp. (Cow) : BC114057
Canis
sp. (Dog) : ENSCAFT00000028591
Pongo
sp. (Orangutan) : ENSPPYT00000024048
Macaca
sp. (Macaque) : XM_001092052
Monodelphis
sp. (Opossum) : XM_001376437
Equus
sp. (Horse) : XM_001492542
Pan
sp. (Chimpanzee) : XM_521214
Gallus
sp. (Chicken) : Y14063
HIX0028376
HIT000425269
(
AK292472
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,288,321 - 107,320,699 (32,379)
query : 1 - 1,292 (1,292/1,292)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000920 : Myelin P0 protein related
IPR003598 : Immunoglobulin subtype 2
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, pero 3, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000589332 (
ENST00000485533
)
(V-set and immunoglobulin domain-containing protein 1 isoform 1 precursor.)
genome : 107,307,969 - 107,316,062 (8,094)
query : 1 - 404 (404/419)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.964
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cysk 11, cyto_nucl 7, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0028376
HIT000583686 (
ENST00000479635
)
(V-set and immunoglobulin domain-containing protein 1; Cell surface A33 antigen; Glycoprotein A34; Precursor;)
genome : 107,316,026 - 107,317,083 (1,058)
query : 1 - 641 (641/641)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 11.5, cyto_nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028376)
HIX0016981
HIT000035567
(
BC011960
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,327,438 - 107,334,783 (7,346)
query : 1 - 1,480 (1,480/1,500)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 12.5, mito 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000490620
(
AK295996
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,327,442 - 107,334,768 (7,327)
query : 1 - 1,384 (1,384/1,405)
5 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;0.992)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 7.5, mito 6,
extr_plas 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000199689 (
NM_002814
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,327,435 - 107,334,874 (7,440)
query : 1 - 1,574 (1,574/1,585)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 12.5, mito 8, nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000214569 (
NM_170750
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,327,435 - 107,334,874 (7,440)
query : 1 - 1,495 (1,495/1,506)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 7.5, mito 6,
extr_plas 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000103251 (
ENST00000217958
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,327,437 - 107,334,848 (7,412)
query : 1 - 1,546 (1,546/1,546)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 12.5, mito 8, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000014714
(
AK058108
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,327,439 - 107,334,847 (7,409)
query : 2 - 1,545 (1,544/1,545)
5 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 12.5, mito 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000101791
(
D83197
)
Representative transcript
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,327,439 - 107,334,848 (7,410)
query : 1 - 1,544 (1,544/1,544)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 12.5, mito 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB171136
Mus
sp. (Mouse) : AK136400
Danio
sp. (Zebrafish) : AY398401
Bos
sp. (Cow) : BC112760
Gallus
sp. (Chicken) : BX930932
Tetraodon
sp. (Tetraodon) : CR710023
Oryzias
sp. (Medaka) : ENSORLT00000010122
Pongo
sp. (Orangutan) : ENSPPYT00000024049
Takifugu
sp. (Fugu) : SINFRUT00000173181
Monodelphis
sp. (Opossum) : XM_001363617
Equus
sp. (Horse) : XM_001490777
Pan
sp. (Chimpanzee) : XM_521215
Canis
sp. (Dog) : XM_538135
HIX0016981
HIT000058187
(
AB009619
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,327,439 - 107,334,772 (7,334)
query : 1 - 1,468 (1,468/1,468)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 12.5, mito 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000353576 (
ENST00000372296
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,327,827 - 107,334,772 (6,946)
query : 1 - 878 (878/878)
5 exons
identity = 0.997
3'(1.000;1.000;1.000;0.971;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, extr 12, cyto_nucl 7.5, mito 6,
extr_plas 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000353575 (
ENST00000372295
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,328,005 - 107,334,772 (6,768)
query : 1 - 779 (779/779)
5 exons
identity = 0.996
3'(1.000;1.000;1.000;0.971;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 11.5, mito 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000083962
(
AY057056
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,328,060 - 107,334,772 (6,713)
query : 1 - 768 (768/768)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 7.5, mito 6,
extr_plas 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000315067 (
ENST00000361815
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,328,060 - 107,334,772 (6,713)
query : 1 - 768 (768/768)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 7.5, mito 6,
extr_plas 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000132830 (
ENST00000340200
)
(26S proteasome non-ATPase regulatory subunit 10 isoform 2.)
genome : 107,328,073 - 107,334,750 (6,678)
query : 1 - 713 (713/713)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 12, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000266611
(
BT019689
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,328,205 - 107,334,750 (6,546)
query : 1 - 680 (680/681)
5 exons
identity = 0.999
3'(0.993;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 12.5, mito 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000428192
(
AK309326
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,330,275 - 107,334,768 (4,494)
query : 1 - 1,039 (1,039/1,039)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13.5, mito 5, extr 3, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000666766 (
ENST00000553388
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,330,275 - 107,334,768 (4,494)
query : 1 - 1,039 (1,039/1,039)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13.5, mito 5, extr 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016981
HIT000131178 (
ENST00000338548
)
(26S proteasome non-ATPase regulatory subunit 10; 26S proteasome regulatory subunit p28; Gankyrin; p28(GANK);)
genome : 107,331,710 - 107,334,779 (3,070)
query : 1 - 514 (514/514)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 4, nucl 2, golg 2, cyto_pero 2,
cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016981)
HIX0016982
HIT000260228
(
BC061696
)
Representative transcript
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,334,897 - 107,397,405 (62,509)
query : 3 - 1,822 (1,820/1,850)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
EC number :
EC 3.4.22.-
InterPro :
IPR005078 : Peptidase C54
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 13.5, nucl 6, mito 3, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ720667
Mus
sp. (Mouse) : AK041379
Danio
sp. (Zebrafish) : BC095617
Bos
sp. (Cow) : BC147962
Pongo
sp. (Orangutan) : CR860595
Oryzias
sp. (Medaka) : ENSORLT00000002614
Tetraodon
sp. (Tetraodon) : GSTENT00004881001
Macaca
sp. (Macaque) : XM_001097145
Pan
sp. (Chimpanzee) : XM_001145346
Monodelphis
sp. (Opossum) : XM_001376437
Equus
sp. (Horse) : XM_001490668
Canis
sp. (Dog) : XM_538136
HIX0016982
HIT000307197 (
ENST00000345734
)
(Cysteine protease ATG4A isoform b.)
genome : 107,334,898 - 107,397,901 (63,004)
query : 1 - 2,129 (2,129/2,129)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16.5, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000353512 (
ENST00000372232
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,334,898 - 107,397,901 (63,004)
query : 1 - 2,315 (2,315/2,315)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 13.5, nucl 6, mito 3, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000211529 (
NM_052936
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,334,899 - 107,397,901 (63,003)
query : 1 - 2,314 (2,314/2,326)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 13.5, nucl 6, mito 3, cysk 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000318043 (
NM_178270
)
(Cysteine protease ATG4A isoform b.)
genome : 107,334,899 - 107,397,901 (63,003)
query : 1 - 2,128 (2,128/2,140)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16.5, nucl 7.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000353534 (
ENST00000372254
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,334,934 - 107,397,893 (62,960)
query : 1 - 2,199 (2,199/2,199)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 13.5, nucl 6, mito 3, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000554969 (
ENST00000457035
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,334,999 - 107,393,405 (58,407)
query : 1 - 939 (939/939)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 20, cyto 18, nucl 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000052630
(
BC041862
)
(Cysteine protease ATG4A; EC=3.4.22.-; Autophagy-related protein 4 homolog A;)
genome : 107,335,014 - 107,397,896 (62,883)
query : 1 - 2,496 (2,496/2,525)
14 exons
identity = 0.998
5'(0.981;1.000;0.997;0.986;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.4.22.-
InterPro :
IPR005078 : Peptidase C54
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 13, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000353526 (
ENST00000372246
)
(Cysteine protease ATG4A; EC=3.4.22.-; Autophagy-related protein 4 homolog A;)
genome : 107,335,014 - 107,397,901 (62,888)
query : 1 - 2,501 (2,501/2,501)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 13, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000488157
(
AK293533
)
(Cysteine protease ATG4A; EC=3.4.22.-; Autophagy-related protein 4 homolog A;)
genome : 107,335,018 - 107,397,243 (62,226)
query : 1 - 1,653 (1,653/1,653)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.988;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
InterPro :
IPR005078 : Peptidase C54
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 10, extr 3, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000644741 (
ENST00000545696
)
(Cysteine protease ATG4A; EC=3.4.22.-; Autophagy-related protein 4 homolog A;)
genome : 107,335,018 - 107,397,243 (62,226)
query : 1 - 1,653 (1,653/1,653)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 10, nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000248297
(
AJ504651
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,335,028 - 107,396,947 (61,920)
query : 1 - 1,231 (1,231/1,231)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
InterPro :
IPR005078 : Peptidase C54
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 13.5, nucl 6, mito 3, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000433295
(
AK314429
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,335,030 - 107,396,942 (61,913)
query : 1 - 1,224 (1,224/1,224)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.982;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
InterPro :
IPR005078 : Peptidase C54
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 13.5, nucl 6, mito 3, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000247215
(
AJ320508
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,335,039 - 107,396,970 (61,932)
query : 1 - 1,243 (1,243/1,243)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.995;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
InterPro :
IPR005078 : Peptidase C54
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13, nucl 5.5, mito 3, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000247216
(
AJ320509
)
(Cysteine protease ATG4A isoform b.)
genome : 107,335,039 - 107,396,970 (61,932)
query : 1 - 1,057 (1,057/1,057)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR005078 : Peptidase C54
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000136154 (
ENST00000343524
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,335,040 - 107,397,901 (62,862)
query : 1 - 1,941 (1,941/1,941)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 15, nucl 9.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000011541
(
AK054927
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,335,040 - 107,397,900 (62,861)
query : 1 - 1,940 (1,940/1,940)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
InterPro :
IPR005078 : Peptidase C54
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 11.5, nucl 9.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000060573
(
AB066214
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,369,303 - 107,396,942 (27,640)
query : 7 - 1,197 (1,191/1,197)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.995
EC number :
EC 3.4.22.-
InterPro :
IPR005078 : Peptidase C54
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 13.5, nucl 6, mito 3, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000478289 (
ENST00000394892
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,369,307 - 107,395,088 (25,782)
query : 1 - 935 (935/935)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 11.5, extr 10, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0260767
HIT000497358
(
AK302734
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,386,780 - 107,403,199 (16,420)
query : 1 - 1,031 (1,031/1,031)
3 exons
identity = 0.999
3'(0.996;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, cyto_nucl 12, extr 10, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260767)
HIX0260767
HIT000516114 (
ENST00000418180
)
(C-type lectin fold domain containing protein.)
genome : 107,386,780 - 107,403,199 (16,420)
query : 1 - 1,031 (1,031/1,031)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, cyto_nucl 12, extr 10, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260767)
HIX0016982
HIT000043160
(
AK123287
)
(Cysteine protease ATG4A; EC=3.4.22.-; AUT-like 2 cysteine endopeptidase; Autophagin-2; Autophagy-related cysteine endopeptidase 2; Autophagy-related protein 4 homolog A; hAPG4A;)
genome : 107,391,578 - 107,397,102 (5,525)
query : 1 - 2,347 (2,347/2,347)
4 exons
identity = 0.997
5'(0.996;1.000;0.991;1.000)3'
coverage = 1.000
EC number :
EC 3.4.22.-
InterPro :
IPR005078 : Peptidase C54
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 8.5, cyto_nucl 5.5, nucl 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000579102 (
ENST00000474825
)
(Cysteine protease ATG4A isoform b.)
genome : 107,393,262 - 107,396,240 (2,979)
query : 1 - 502 (502/502)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, extr 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0016982
HIT000592858 (
ENST00000489247
)
(Cysteine protease ATG4A isoform b.)
genome : 107,393,298 - 107,397,098 (3,801)
query : 1 - 623 (623/623)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 10, mito 7, nucl 6.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016982)
HIX0260767
HIT000495126
(
AK300502
)
Representative transcript
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,400,154 - 107,404,972 (4,819)
query : 4 - 944 (941/944)
4 exons
identity = 0.998
3'(1.000;1.000;1.000;0.984)5'
coverage = 0.997
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR008160 : Collagen triple helix repeat
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto 8.5, cyto_nucl 8, nucl 6.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260767)
HIX0260767
HIT000484705
(
EU182215
)
(C-type lectin fold domain containing protein.)
genome : 107,400,233 - 107,403,834 (3,602)
query : 1 - 687 (687/687)
3 exons
identity = 0.997
3'(0.996;1.000;0.993)5'
coverage = 1.000
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.6667, nucl 13.5, cyto 10.5,
cyto_pero 7.16667, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260767)
HIX0260767
HIT000591342 (
ENST00000487645
)
(Collagen triple helix repeat containing protein.)
genome : 107,404,861 - 107,406,828 (1,968)
query : 1 - 812 (812/812)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, cyto 16, nucl 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260767)
HIX0260713
HIT000192524
(
L22763
)
Representative transcript
(Collagen alpha-2(IV) chain; Lethal protein 2; Precursor;)
genome : 107,431,221 - 107,682,702 (251,482)
query : 9 - 1,736 (1,728/1,736)
22 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.986;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.995
InterPro :
IPR008160 : Collagen triple helix repeat
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, E.R. 4, mito 3, pero 3, lyso 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260713)
HIX0260713
HIT000085913
(
BC000874
)
(Collagen alpha-2(IV) chain; Lethal protein 2; Precursor;)
genome : 107,446,157 - 107,681,580 (235,424)
query : 15 - 1,003 (989/1,034)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.970
InterPro :
IPR008160 : Collagen triple helix repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, lyso 4, E.R. 3, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260713)
HIX0260713
HIT000572912 (
ENST00000468338
)
(Collagen triple helix repeat containing protein.)
genome : 107,457,022 - 107,682,702 (225,681)
query : 1 - 865 (865/865)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260713)
HIX0016984
HIT000023051
(
AK098221
)
Representative transcript
(Hypothetical protein.)
genome : 107,461,382 - 107,463,608 (2,227)
query : 1 - 2,227 (2,227/2,227)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 9, mito 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016984)
HIX0260713
HIT000264161
(
BC070203
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,510,872 - 107,681,645 (170,774)
query : 1 - 1,873 (1,873/1,904)
4 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260713)
HIX0260713
HIT000032362
(
BC005305
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,510,878 - 107,682,727 (171,850)
query : 1 - 1,777 (1,777/1,809)
4 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260713)
HIX0260713
HIT000581245 (
ENST00000477085
)
(Conserved hypothetical protein.)
genome : 107,510,872 - 107,682,727 (171,856)
query : 1 - 1,784 (1,784/1,784)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260713)
HIX0260713
HIT000566758 (
ENST00000461897
)
(Conserved hypothetical protein.)
genome : 107,510,872 - 107,681,660 (170,789)
query : 1 - 1,889 (1,889/1,889)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260713)
HIX0260713
HIT000100148
(
BT007228
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,512,310 - 107,681,226 (168,917)
query : 12 - 220 (209/222)
3 exons
identity = 0.995
3'(1.000;1.000;0.982)5'
coverage = 0.941
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260713)
HIX0056593
HIT000551742 (
ENST00000453808
)
(Triacylglycerol lipase family protein.)
genome : 107,626,628 - 107,627,223 (596)
query : 1 - 477 (477/477)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056593)
HIX0260765
HIT000430168
(
AK311302
)
Representative transcript
(Conserved hypothetical protein.)
genome : 107,683,074 - 107,686,521 (3,448)
query : 1 - 764 (764/764)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 7, mito 4, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260765)
HIX0260765
HIT000581576 (
ENST00000477429
)
(Hypothetical protein.)
genome : 107,683,074 - 107,686,321 (3,248)
query : 1 - 564 (564/564)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 7, mito 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260765)
HIX0260765
HIT000574818 (
ENST00000470339
)
(Collagen triple helix repeat containing protein.)
genome : 107,683,172 - 107,812,265 (129,094)
query : 1 - 782 (782/782)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260765)
HIX0016985
HIT000023727
(
AL049291
)
Representative transcript
(Conserved hypothetical protein.)
genome : 107,760,346 - 107,764,754 (4,409)
query : 4 - 4,412 (4,409/4,460)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21.5, extr_plas 14.5, plas 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016985)
HIX0260736
HIT000093864
(
BC035387
)
Representative transcript
(Collagen triple helix repeat containing protein.)
genome : 107,825,722 - 107,870,496 (44,775)
query : 3 - 3,620 (3,618/3,649)
20 exons
identity = 0.999
5'(0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 0.999
InterPro :
IPR008160 : Collagen triple helix repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 11.5, cyto 9.5, extr 6, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260736)
HIX0260736
HIT000587235 (
ENST00000483338
)
(Collagen triple helix repeat containing protein.)
genome : 107,825,722 - 107,870,499 (44,778)
query : 1 - 3,622 (3,622/3,622)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 11.5, cyto 9.5, extr 6, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260736)
HIX0260736
HIT000215884
(
S59334
)
(Non-protein coding transcript.)
genome : 107,826,114 - 107,826,167 (54)
query : 1 - 54 (54/54)
1 exon
identity = 0.981
5'(0.981)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260736)
HIX0260736
HIT000605838 (
ENST00000505728
)
(Collagen triple helix repeat containing protein.)
genome : 107,865,906 - 107,869,785 (3,880)
query : 1 - 537 (537/537)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260736)
HIX0028413
HIT000047229
(
AK127356
)
Representative transcript
(Conserved hypothetical protein.)
genome : 107,872,627 - 107,876,681 (4,055)
query : 1 - 4,053 (4,053/4,053)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 7, nucl 4, pero 3, plas 2, cysk 2,
cysk_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028413)
HIX0260720
HIT000592842 (
ENST00000489230
)
(Conserved hypothetical protein.)
genome : 107,913,265 - 107,929,362 (16,098)
query : 1 - 721 (721/737)
6 exons
identity = 0.999
5'(1.000;0.993;1.000;1.000;1.000;1.000)3'
coverage = 0.978
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto_nucl 5.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260720)
HIX0260720
HIT000426766
(
AK307900
)
Representative transcript
(C-type lectin fold domain containing protein.)
genome : 107,917,682 - 107,939,619 (21,938)
query : 1 - 1,579 (1,579/1,579)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.978)3'
coverage = 1.000
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR008160 : Collagen triple helix repeat
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 13, nucl 6.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260720)
HIX0260720
HIT000610452 (
ENST00000510690
)
(Conserved hypothetical protein.)
genome : 107,917,682 - 107,920,809 (3,128)
query : 1 - 382 (382/382)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 17.5, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260720)
HIX0260720
HIT000615073 (
ENST00000515658
)
(C-type lectin fold domain containing protein.)
genome : 107,929,259 - 107,939,992 (10,734)
query : 11 - 790 (780/790)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.987
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260720)
HIX0260720
HIT000604746 (
ENST00000504541
)
(C-type lectin fold domain containing protein.)
genome : 107,936,052 - 107,940,166 (4,115)
query : 1 - 859 (859/859)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.5, nucl 13, cyto 12, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260720)
HIX0260720
HIT000488690
(
AK294066
)
(C-type lectin fold domain containing protein.)
genome : 107,936,074 - 107,940,155 (4,082)
query : 1 - 999 (999/999)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto_nucl 14.5, cyto 9.5, cyto_pero 7.33333,
extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260720)
HIX0260720
HIT000055591
(
BX641049
)
(C-type lectin fold domain containing protein.)
genome : 107,936,845 - 107,940,759 (3,915)
query : 1 - 3,915 (3,915/3,935)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 10, cyto_nucl 9.5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260720)
HIX0056115
HIT000027048
(
AL832136
)
(Conserved hypothetical protein.)
genome : 107,963,181 - 107,968,174 (4,994)
query : 1 - 4,994 (4,994/5,010)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, plas 5, E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056115)
HIX0260878
HIT000677338 (
ENST00000564206
)
(Conserved hypothetical protein.)
genome : 107,963,179 - 107,968,174 (4,996)
query : 1 - 4,996 (4,996/4,996)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11.5, extr 10, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260878)
HIX0056115
HIT000677025 (
ENST00000563887
)
(Insulin receptor substrate 4; IRS-4; 160 kDa phosphotyrosine protein; py160; Phosphoprotein of 160 kDa; pp160;)
genome : 107,965,300 - 107,975,917 (10,618)
query : 1 - 563 (563/563)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056115)
HIX0114106
HIT000395599
(
EF565110
)
Representative transcript
(Conserved hypothetical protein.)
genome : 107,969,116 - 107,970,178 (1,063)
query : 1 - 1,063 (1,063/1,075)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.989
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 8.5, nucl 6.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0114106)
HIX0056115
HIT000061907
(
AF007567
)
Representative transcript
(Insulin receptor substrate 4; IRS-4; 160 kDa phosphotyrosine protein; py160; Phosphoprotein of 160 kDa; pp160;)
genome : 107,975,712 - 107,979,639 (3,928)
query : 14 - 3,939 (3,926/3,939)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.997
InterPro :
IPR001849 : Pleckstrin homology domain
IPR002404 : Insulin receptor substrate-1, PTB
GO :
0005158 : Molecular Function : insulin receptor binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, E.R. 7.5, E.R._golg 6.5, lyso 5, golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056115)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC060235
Bos
sp. (Cow) : ENSBTAT00000008574
Danio
sp. (Zebrafish) : ENSDART00000008328
Macaca
sp. (Macaque) : ENSMMUT00000026925
Monodelphis
sp. (Opossum) : ENSMODT00000014652
Oryzias
sp. (Medaka) : ENSORLT00000011818
Pongo
sp. (Orangutan) : ENSPPYT00000024057
Rattus
sp. (Rat) : ENSRNOT00000025688
Tetraodon
sp. (Tetraodon) : GSTENT00005624001
Takifugu
sp. (Fugu) : SINFRUT00000128710
Equus
sp. (Horse) : XM_001492363
Canis
sp. (Dog) : XM_549179
Pan
sp. (Chimpanzee) : XR_023342
HIX0056115
HIT000353409 (
ENST00000372129
)
(Insulin receptor substrate 4; IRS-4; 160 kDa phosphotyrosine protein; py160; Phosphoprotein of 160 kDa; pp160;)
genome : 107,975,712 - 107,979,651 (3,940)
query : 1 - 3,940 (3,940/3,940)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, E.R. 7.5, E.R._golg 6.5, lyso 5, golg 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056115)
HIX0056115
HIT000200419 (
NM_003604
)
(Insulin receptor substrate 4; IRS-4; 160 kDa phosphotyrosine protein; py160; Phosphoprotein of 160 kDa; pp160;)
genome : 107,975,727 - 107,979,607 (3,881)
query : 1 - 3,881 (3,881/3,881)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, E.R. 7.5, E.R._golg 6.5, lyso 5, golg 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056115)
HIX0056417
HIT000096290
(
BC040635
)
Representative transcript
(Hypothetical short protein.)
genome : 107,979,770 - 107,982,133 (2,364)
query : 1 - 1,140 (1,140/1,140)
3 exons
identity = 0.998
5'(1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 13.5, cyto 8, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056417)
HIX0056417
HIT000533947 (
ENST00000436013
)
(Hypothetical short protein.)
genome : 107,979,770 - 107,982,133 (2,364)
query : 1 - 1,142 (1,142/1,142)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 13.5, cyto 8, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056417)
HIX0056214
HIT000198779 (
NM_001847
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,398,837 - 107,682,704 (283,868)
query : 1 - 6,572 (6,572/6,595)
45 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, lyso 3, nucl 2.5, plas 2, mito 2, E.R. 2,
cyto_nucl 2, pero 2, E.R._mito 2, mito_pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
HIX0056214
HIT000211421 (
NM_033641
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,398,837 - 107,681,658 (282,822)
query : 1 - 6,698 (6,698/6,721)
45 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 4.5, cyto_nucl 4, lyso 4, cyto 2.5,
plas 2, mito 2, E.R. 2, E.R._mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
HIX0056214
HIT000353496 (
ENST00000372216
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,398,837 - 107,682,702 (283,866)
query : 1 - 6,570 (6,570/6,570)
45 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, lyso 3, nucl 2.5, plas 2, mito 2, E.R. 2,
cyto_nucl 2, pero 2, E.R._mito 2, mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
HIX0056214
HIT000128999 (
ENST00000334504
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,398,837 - 107,681,660 (282,824)
query : 1 - 6,700 (6,700/6,700)
45 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 4.5, cyto_nucl 4, lyso 4, cyto 2.5,
plas 2, mito 2, E.R. 2, E.R._mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
HIX0056214
HIT000478271 (
ENST00000394872
)
(Collagen alpha-6(IV) chain isoform B precursor.)
genome : 107,398,838 - 107,681,658 (282,821)
query : 1 - 6,700 (6,700/6,700)
44 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.841;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 4.5, lyso 4, cyto_nucl 3.5, plas 2,
mito 2, E.R. 2, E.R._mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
HIX0056214
HIT000101101
(
D21337
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,399,121 - 107,681,660 (282,540)
query : 1 - 6,374 (6,374/6,378)
45 exons
identity = 0.995
3'(0.993;1.000;1.000;1.000;1.000;0.990;0.858;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.995;1.000;0.986;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.996)5'
coverage = 0.999
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR008160 : Collagen triple helix repeat
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 4.5, lyso 4, cyto_nucl 3.5, plas 2,
mito 2, E.R. 2, E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
HIX0056214
HIT000501600
(
BC140855
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,399,275 - 107,681,556 (282,282)
query : 1 - 5,987 (5,987/5,987)
43 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.990;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR008160 : Collagen triple helix repeat
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 4.5, cyto_nucl 4, lyso 4, cyto 2.5,
plas 2, mito 2, E.R. 2, E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
HIX0056214
HIT000503065
(
BC144669
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,399,275 - 107,681,556 (282,282)
query : 1 - 6,086 (6,086/6,086)
44 exons
identity = 1.000
3'(1.000;1.000;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.990;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR008160 : Collagen triple helix repeat
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 4.5, cyto_nucl 4, lyso 4, cyto 2.5,
plas 2, mito 2, E.R. 2, E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
HIX0056214
HIT000637615 (
ENST00000538570
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,399,275 - 107,681,556 (282,282)
query : 1 - 5,987 (5,987/5,987)
43 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 4.5, cyto_nucl 4, lyso 4, cyto 2.5,
plas 2, mito 2, E.R. 2, E.R._mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
HIX0056214
HIT000644734 (
ENST00000545689
)
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,399,275 - 107,681,556 (282,282)
query : 1 - 6,086 (6,086/6,086)
44 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 4.5, cyto_nucl 4, lyso 4, cyto 2.5,
plas 2, mito 2, E.R. 2, E.R._mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
HIX0056214
HIT000217570
(
U04845
)
Representative transcript
(Collagen alpha-6(IV) chain; Precursor;)
genome : 107,399,686 - 107,682,702 (283,017)
query : 9 - 5,732 (5,724/5,732)
45 exons
identity = 0.998
3'(0.993;1.000;1.000;0.991;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.995;1.000;0.993;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.986;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR008160 : Collagen triple helix repeat
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, nucl 3.5, cyto_nucl 2.5, plas 2, mito 2,
E.R. 2, pero 2, lyso 2, E.R._mito 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056214)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AB041351
Gallus
sp. (Chicken) : CR338723
Equus
sp. (Horse) : ENSECAT00000023228
Oryzias
sp. (Medaka) : ENSORLT00000011696
Pongo
sp. (Orangutan) : ENSPPYT00000024052
Rattus
sp. (Rat) : ENSRNOT00000040428
Tetraodon
sp. (Tetraodon) : GSTENT00009982001
Takifugu
sp. (Fugu) : SINFRUT00000178992
Canis
sp. (Dog) : U50937
Macaca
sp. (Macaque) : XM_001098348
Pan
sp. (Chimpanzee) : XM_521216
Bos
sp. (Cow) : XM_601826
HIX0028371
HIT000197530 (
NM_000495
)
(Collagen alpha-5(IV) chain; Precursor;)
genome : 107,683,074 - 107,940,775 (257,702)
query : 1 - 6,507 (6,507/6,523)
51 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 16, extr 9, lyso 3, plas 2, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028371)
HIX0028371
HIT000211318 (
NM_033380
)
(Collagen alpha-5(IV) chain; Precursor;)
genome : 107,683,074 - 107,940,775 (257,702)
query : 1 - 6,525 (6,525/6,541)
51 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.950;0.978;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 17, extr 9, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028371)
HIX0028371
HIT000435971
(
BC151846
)
Representative transcript
(Collagen alpha-5(IV) chain; Precursor;)
genome : 107,683,112 - 107,940,768 (257,657)
query : 1 - 6,480 (6,480/6,496)
51 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.990;1.000;
1.000;1.000;0.994;1.000;0.993;1.000;1.000;
1.000;1.000;1.000;1.000;0.980;0.950;0.978;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR008160 : Collagen triple helix repeat
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 17, extr 9, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028371)
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : AF470624
Mus
sp. (Mouse) : AK133179
Gallus
sp. (Chicken) : CR524299
Danio
sp. (Zebrafish) : DQ023280
Oryzias
sp. (Medaka) : ENSORLT00000011807
Pongo
sp. (Orangutan) : ENSPPYT00000024055
Takifugu
sp. (Fugu) : SINFRUT00000127905
Takifugu
sp. (Fugu) : SINFRUT00000180290
Rattus
sp. (Rat) : XM_001055156
Macaca
sp. (Macaque) : XM_001098546
Monodelphis
sp. (Opossum) : XM_001376393
Equus
sp. (Horse) : XM_001490445
Bos
sp. (Cow) : XM_588970
Pan
sp. (Chimpanzee) : XR_023668
HIX0028371
HIT000314861 (
ENST00000361603
)
(Collagen alpha-5(IV) chain; Precursor;)
genome : 107,683,112 - 107,940,775 (257,664)
query : 1 - 6,469 (6,469/6,469)
51 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 16, extr 9, lyso 3, plas 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028371)
HIX0028371
HIT000125477 (
ENST00000328300
)
(Collagen alpha-5(IV) chain; Precursor;)
genome : 107,683,112 - 107,940,771 (257,660)
query : 1 - 6,483 (6,483/6,483)
51 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.950;0.978;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 17, extr 9, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028371)
HIX0028371
HIT000196773
(
M90464
)
(Collagen alpha-5(IV) chain; Precursor;)
genome : 107,683,154 - 107,865,086 (181,933)
query : 1 - 2,933 (2,933/2,933)
32 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008160 : Collagen triple helix repeat
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 18, extr 9, E.R._mito 9, E.R._golg 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028371)
HIX0028371
HIT000195874
(
M58526
)
(Collagen alpha-5(IV) chain; Precursor;)
genome : 107,807,131 - 107,939,608 (132,478)
query : 9 - 4,816 (4,808/4,816)
48 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.977;1.000;1.000;1.000;1.000;
0.988;0.978;1.000;1.000;1.000;1.000;0.982;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR008160 : Collagen triple helix repeat
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 10.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028371)
HIX0028371
HIT000195399
(
M31115
)
(Collagen alpha-3(IV) chain; Contains: Tumstatin; Precursor;)
genome : 107,865,095 - 107,940,771 (75,677)
query : 1 - 3,482 (3,482/3,517)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.990
InterPro :
IPR001442 : Collagen IV, non-collagenous
IPR008160 : Collagen triple helix repeat
IPR016187 : C-type lectin fold
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005581 : Cellular Component : collagen trimer
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, nucl 6.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028371)
AC004081.1
106500001-106647440 F +
NCBI
AL035088.1
106647441-106793698 F +
NCBI
AL137787.11
106793699-106883044 F +
NCBI
AL772400.3
106883045-106955758 F +
NCBI
AL590423.14
106955759-107036925 F +
NCBI
AL109946.12
107036926-107129006 F +
NCBI
AL034399.6
107129007-107247362 F -
NCBI
AL953860.3
107247363-107292252 F +
NCBI
AL031177.1
107292253-107413647 F +
NCBI
AL136080.6
107413648-107529652 F +
NCBI
AL109943.18
107529653-107624322 F +
NCBI
AL034369.1
107624323-107746379 F +
NCBI
AL031622.1
107746380-107850953 F +
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