bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0016649
HIT000255319
(
AY540024
)
(Non-protein coding transcript.)
genome : 10,437,514 - 10,535,202 (97,689)
query : 1 - 286 (286/286)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255309
(
AY540014
)
(Midline-1 isoform 6.)
genome : 10,443,202 - 10,535,202 (92,001)
query : 1 - 546 (546/546)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR003649 : B-box, C-terminal
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 9, cyto_nucl 5.33333, cyto_plas 5.33333,
mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255310
(
AY540015
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,443,202 - 10,535,202 (92,001)
query : 1 - 660 (660/660)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR003649 : B-box, C-terminal
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 14, cyto_nucl 7.83333,
extr_plas 7.83333, cyto_plas 7.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255311
(
AY540016
)
(Midline-1 isoform 6.)
genome : 10,443,202 - 10,535,202 (92,001)
query : 1 - 552 (552/552)
4 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 10, extr_plas 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255258
(
AY539963
)
(Midline-1 family protein.)
genome : 10,450,520 - 10,533,151 (82,632)
query : 1 - 557 (557/576)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.967
InterPro :
IPR003649 : B-box, C-terminal
IPR017903 : COS domain
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10.3333, cyto_plas 9.16667,
extr 9, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255259
(
AY539964
)
(Midline-1 family protein.)
genome : 10,450,520 - 10,533,112 (82,593)
query : 1 - 549 (549/568)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 0.967
InterPro :
IPR017903 : COS domain
IPR027727 : Midline-1
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, extr 9, mito 9, cyto_nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255302
(
AY540007
)
(Midline-1 family protein.)
genome : 10,454,412 - 10,535,202 (80,791)
query : 1 - 520 (520/520)
2 exons
identity = 0.996
3'(0.998)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 9.5, cyto_nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255261
(
AY539966
)
(Hypothetical protein.)
genome : 10,469,480 - 10,533,109 (63,630)
query : 1 - 160 (160/160)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255296
(
AY540001
)
(Midline-1 family protein.)
genome : 10,469,481 - 10,535,202 (65,722)
query : 1 - 490 (490/490)
3 exons
identity = 0.998
3'(0.996)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 11, cyto_nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255297
(
AY540002
)
(Midline-1 family protein.)
genome : 10,469,481 - 10,535,202 (65,722)
query : 1 - 376 (376/376)
3 exons
identity = 0.997
3'(0.994)5'
coverage = 1.000
InterPro :
IPR027727 : Midline-1
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 8, cyto_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255283
(
AY539988
)
Representative transcript
(Midline-1 isoform 6.)
genome : 10,473,382 - 10,535,587 (62,206)
query : 1 - 1,786 (1,786/1,796)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000655776 (
NM_001193281
)
(Midline-1 family protein.)
genome : 10,473,378 - 10,535,643 (62,266)
query : 1 - 1,846 (1,846/1,846)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255260
(
AY539965
)
(Midline-1 family protein.)
genome : 10,474,462 - 10,533,112 (58,651)
query : 1 - 204 (204/208)
3 exons
identity = 0.980
3'(1.000)5'
coverage = 0.981
InterPro :
IPR027727 : Midline-1
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 2.5, cyto_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255284
(
AY539989
)
(Midline-1 family protein.)
genome : 10,474,489 - 10,535,202 (60,714)
query : 1 - 408 (408/408)
3 exons
identity = 0.998
3'(0.996)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 7.5, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255285
(
AY539990
)
(Midline-1 family protein.)
genome : 10,474,498 - 10,535,223 (60,726)
query : 1 - 651 (651/651)
4 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255286
(
AY539991
)
(Midline-1 family protein.)
genome : 10,498,070 - 10,535,202 (37,133)
query : 1 - 359 (359/370)
2 exons
identity = 0.992
3'(1.000)5'
coverage = 0.970
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 8, cyto_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255262
(
AY539967
)
(Hypothetical short protein.)
genome : 10,531,665 - 10,533,112 (1,448)
query : 1 - 1,448 (1,448/1,463)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 9, cyto_nucl 9, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255263
(
AY539968
)
(Non-protein coding transcript.)
genome : 10,532,911 - 10,533,112 (202)
query : 1 - 202 (202/202)
1 exon
identity = 0.990
3'(0.990)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255264
(
AY539969
)
(Midline-1 family protein.)
genome : 10,533,108 - 10,535,202 (2,095)
query : 1 - 433 (433/433)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 7.5, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255265
(
AY539970
)
(Midline-1 family protein.)
genome : 10,533,108 - 10,535,202 (2,095)
query : 1 - 319 (319/319)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR027727 : Midline-1
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255266
(
AY539971
)
(Midline-1 family protein.)
genome : 10,533,108 - 10,535,202 (2,095)
query : 1 - 670 (670/670)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 7.5, cyto_nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255267
(
AY539972
)
(Midline-1 family protein.)
genome : 10,533,108 - 10,535,202 (2,095)
query : 1 - 564 (564/564)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 4.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255268
(
AY539973
)
(Midline-1 family protein.)
genome : 10,533,108 - 10,535,202 (2,095)
query : 1 - 556 (556/556)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR027727 : Midline-1
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 6, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255269
(
AY539974
)
(Midline-1 family protein.)
genome : 10,533,108 - 10,535,202 (2,095)
query : 1 - 445 (445/445)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR027727 : Midline-1
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 6, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255270
(
AY539975
)
(Non-protein coding transcript.)
genome : 10,533,108 - 10,535,202 (2,095)
query : 1 - 173 (173/173)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000255287
(
AY539992
)
(Midline-1 family protein.)
genome : 10,535,005 - 10,535,202 (198)
query : 1 - 198 (198/210)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.943
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 4, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000521548 (
ENST00000423614
)
(Midline-1 family protein.)
genome : 10,534,995 - 10,588,625 (53,631)
query : 1 - 945 (945/945)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000084455
(
AY112901
)
(Non-protein coding transcript.)
genome : 10,535,591 - 10,588,591 (53,001)
query : 1 - 315 (315/315)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000084457
(
AY112903
)
(Non-protein coding transcript.)
genome : 10,535,591 - 10,544,958 (9,368)
query : 1 - 188 (188/188)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0016649
HIT000084454
(
AY112900
)
(Hypothetical short protein.)
genome : 10,535,613 - 10,852,101 (316,489)
query : 1 - 395 (395/395)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016649)
HIX0056379
HIT000255960
(
AY660576
)
Representative transcript
(Conserved hypothetical protein.)
genome : 10,583,236 - 10,587,975 (4,740)
query : 1 - 4,740 (4,740/4,740)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056379)
HIX0056212
HIT000255963
(
AY660579
)
(Hypothetical short protein.)
genome : 10,865,996 - 11,129,229 (263,234)
query : 9 - 1,557 (1,549/1,557)
4 exons
identity = 0.999
3'(1.000;1.000;0.989;1.000)5'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056212)
HIX0056212
HIT000255961
(
AY660577
)
Representative transcript
(Conserved hypothetical protein.)
genome : 10,981,491 - 11,129,258 (147,768)
query : 2 - 1,081 (1,080/1,081)
5 exons
identity = 0.998
3'(1.000;0.991;1.000;0.989;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 13, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056212)
HIX0056212
HIT000255962
(
AY660578
)
(Hypothetical short protein.)
genome : 10,988,011 - 11,129,234 (141,224)
query : 1 - 1,071 (1,071/1,071)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 8.5, cyto_nucl 8.33333, cyto 5,
cyto_pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056212)
HIX0056212
HIT000531681 (
ENST00000433747
)
(Hypothetical short protein.)
genome : 10,988,011 - 11,129,234 (141,224)
query : 1 - 1,071 (1,071/1,071)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 8.5, cyto_nucl 8.33333, cyto 5,
cyto_pero 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056212)
HIX0017238
HIT000028189
(
AL833277
)
Representative transcript
(Conserved hypothetical protein.)
genome : 11,108,275 - 11,150,108 (41,834)
query : 1 - 6,105 (6,105/6,123)
2 exons
identity = 0.997
3'(0.997;0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017238)
HIX0016650
HIT000202034 (
NM_005333
)
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,406 - 11,141,203 (11,798)
query : 1 - 2,355 (2,355/2,365)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
HIX0016650
HIT000486027 (
NM_001122608
)
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,406 - 11,141,203 (11,798)
query : 1 - 2,297 (2,297/2,307)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
HIX0016650
HIT000654870 (
NM_001171991
)
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,406 - 11,141,203 (11,798)
query : 1 - 2,260 (2,260/2,270)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
HIX0016650
HIT000022669
(
AK097815
)
Representative transcript
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,421 - 11,141,198 (11,778)
query : 1 - 2,278 (2,278/2,278)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
InterPro :
IPR000511 : Cytochrome c/c1 haem-lyase
GO :
0004408 : Molecular Function : holocytochrome-c synthase activity
0005739 : Cellular Component : mitochondrion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB173334
Gallus
sp. (Chicken) : AJ851811
Mus
sp. (Mouse) : AK028608
Danio
sp. (Zebrafish) : AY394970
Danio
sp. (Zebrafish) : BC076303
Bos
sp. (Cow) : BC142105
Tetraodon
sp. (Tetraodon) : CR711946
Canis
sp. (Dog) : ENSCAFT00000018383
Equus
sp. (Horse) : ENSECAT00000009781
Tetraodon
sp. (Tetraodon) : GSTENT00002264001
Takifugu
sp. (Fugu) : SINFRUT00000133442
Rattus
sp. (Rat) : XM_001065465
Monodelphis
sp. (Opossum) : XM_001365120
Pan
sp. (Chimpanzee) : XM_520928
HIX0016650
HIT000122675 (
ENST00000321143
)
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,421 - 11,141,198 (11,778)
query : 1 - 2,277 (2,277/2,277)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
HIX0016650
HIT000306585
(
CR749578
)
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,452 - 11,141,201 (11,750)
query : 1 - 2,310 (2,310/2,331)
7 exons
identity = 0.998
5'(0.979;1.000;0.993;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
InterPro :
IPR000511 : Cytochrome c/c1 haem-lyase
GO :
0004408 : Molecular Function : holocytochrome-c synthase activity
0005739 : Cellular Component : mitochondrion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
HIX0016650
HIT000030580
(
BC001691
)
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,462 - 11,139,999 (10,538)
query : 1 - 1,000 (1,000/1,035)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
InterPro :
IPR000511 : Cytochrome c/c1 haem-lyase
GO :
0004408 : Molecular Function : holocytochrome-c synthase activity
0005739 : Cellular Component : mitochondrion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
HIX0016650
HIT000362041 (
ENST00000380763
)
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,462 - 11,139,999 (10,538)
query : 1 - 1,000 (1,000/1,000)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
HIX0016650
HIT000335248
(
BC095455
)
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,463 - 11,141,195 (11,733)
query : 1 - 2,290 (2,290/2,313)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
InterPro :
IPR000511 : Cytochrome c/c1 haem-lyase
GO :
0004408 : Molecular Function : holocytochrome-c synthase activity
0005739 : Cellular Component : mitochondrion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
HIX0016650
HIT000219490
(
U36787
)
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,481 - 11,139,999 (10,519)
query : 1 - 1,075 (1,075/1,086)
7 exons
identity = 0.999
5'(0.994;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
InterPro :
IPR000511 : Cytochrome c/c1 haem-lyase
GO :
0004408 : Molecular Function : holocytochrome-c synthase activity
0005739 : Cellular Component : mitochondrion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
HIX0016650
HIT000362040 (
ENST00000380762
)
(Cytochrome c-type heme lyase; CCHL; EC=4.4.1.17; Holocytochrome c-type synthase;)
genome : 11,129,485 - 11,139,999 (10,515)
query : 1 - 1,072 (1,072/1,072)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 4.4.1.17
KEGG pathway :
00860 : Porphyrin and chlorophyll metabolism (72)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 7, nucl 6.5, cyto 6.5,
extr_plas 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016650)
HIX0056117
HIT000492337
(
AK297713
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,136,230 - 11,284,124 (147,895)
query : 1 - 2,105 (2,105/2,105)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000633905 (
ENST00000534860
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,136,239 - 11,284,124 (147,886)
query : 1 - 2,096 (2,096/2,096)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056328
HIT000071224
(
AF143324
)
Representative transcript
(Hypothetical short protein.)
genome : 11,140,222 - 11,141,184 (963)
query : 1 - 962 (962/966)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, cyto 14.5, extr 8, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056328)
HIX0056117
HIT000094083
(
BC035785
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,155,663 - 11,445,893 (290,231)
query : 1 - 3,882 (3,882/3,930)
13 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;0.994;1.000;1.000;
1.000;1.000;0.996;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000062669
(
AF022212
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,155,666 - 11,683,821 (528,156)
query : 1 - 5,295 (5,295/5,319)
15 exons
identity = 0.997
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.988;1.000;
0.998)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, nucl 12.5, cyto_mito 10, cyto_nucl 9.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000070073
(
AF117067
)
(Rho GTPase-activating protein 6; Rho-type GTPase-activating protein 6; Rho-type GTPase-activating protein RhoGAPX-1;)
genome : 11,155,666 - 11,683,821 (528,156)
query : 1 - 5,109 (5,109/5,133)
13 exons
identity = 0.997
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.988;0.998)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, mito 11.5, cyto_nucl 10.8333,
cyto_mito 8.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000072724
(
AF177663
)
Representative transcript
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,155,666 - 11,284,095 (128,430)
query : 1 - 3,937 (3,937/3,961)
13 exons
identity = 0.997
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 15, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK079651
Danio
sp. (Zebrafish) : BC117647
Bos
sp. (Cow) : ENSBTAT00000003400
Monodelphis
sp. (Opossum) : ENSMODT00000039440
Oryzias
sp. (Medaka) : ENSORLT00000005893
Pongo
sp. (Orangutan) : ENSPPYT00000023464
Rattus
sp. (Rat) : ENSRNOT00000040311
Tetraodon
sp. (Tetraodon) : GSTENT00027202001
Takifugu
sp. (Fugu) : SINFRUT00000145933
Macaca
sp. (Macaque) : XM_001094565
Pan
sp. (Chimpanzee) : XM_001143524
Equus
sp. (Horse) : XM_001915639
Gallus
sp. (Chicken) : XM_416840
Canis
sp. (Dog) : XM_548858
HIX0056117
HIT000204386 (
NM_013427
)
(Rho GTPase-activating protein 6; Rho-type GTPase-activating protein 6; Rho-type GTPase-activating protein RhoGAPX-1;)
genome : 11,155,663 - 11,683,821 (528,159)
query : 1 - 5,118 (5,118/5,118)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, mito 11.5, cyto_nucl 10.8333,
cyto_mito 8.5, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000362014 (
ENST00000380736
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,155,663 - 11,445,893 (290,231)
query : 1 - 3,883 (3,883/3,883)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000204385 (
NM_013423
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,155,663 - 11,284,095 (128,433)
query : 1 - 3,947 (3,947/3,947)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 15, cyto 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000130491 (
ENST00000337414
)
(Rho GTPase-activating protein 6; Rho-type GTPase-activating protein 6; Rho-type GTPase-activating protein RhoGAPX-1;)
genome : 11,155,664 - 11,683,821 (528,158)
query : 1 - 5,117 (5,117/5,117)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, mito 11.5, cyto_nucl 10.8333,
cyto_mito 8.5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000598611 (
ENST00000495242
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,155,664 - 11,683,821 (528,158)
query : 1 - 5,303 (5,303/5,303)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, nucl 12.5, cyto_mito 10, cyto_nucl 9.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000116333 (
ENST00000303025
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,155,664 - 11,284,095 (128,432)
query : 1 - 3,946 (3,946/3,946)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 15, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000328727
(
AB208792
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,155,667 - 11,683,203 (527,537)
query : 1 - 6,299 (6,299/6,299)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito_nucl 13.8333, nucl 13.5, mito 13.5,
cyto_nucl 10.3333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000592936 (
ENST00000489330
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,155,667 - 11,683,203 (527,537)
query : 1 - 6,299 (6,299/6,299)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, nucl 14, cyto_nucl 9.33333,
cyto_mito 9.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000503329
(
BC150635
)
(Rho GTPase-activating protein 6; Rho-type GTPase-activating protein 6; Rho-type GTPase-activating protein RhoGAPX-1;)
genome : 11,155,841 - 11,682,980 (527,140)
query : 1 - 4,099 (4,099/4,099)
13 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, mito 11.5, cyto_nucl 10.8333,
cyto_mito 8.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000425875
(
AK293078
)
(Rho GTPase-activating protein 6; Rho-type GTPase-activating protein 6; Rho-type GTPase-activating protein RhoGAPX-1;)
genome : 11,156,854 - 11,683,252 (526,399)
query : 1 - 3,358 (3,358/3,358)
13 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.996;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, mito 11.5, cyto_nucl 10.8333,
cyto_mito 8.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000492371
(
AK297747
)
(Rho GTPase-activating protein 6; Rho-type GTPase-activating protein 6; Rho-type GTPase-activating protein RhoGAPX-1;)
genome : 11,156,909 - 11,197,559 (40,651)
query : 2 - 1,658 (1,657/1,658)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000062237
(
AF012272
)
(Rho GTPase-activating protein 6 isoform 3.)
genome : 11,161,517 - 11,683,821 (522,305)
query : 1 - 3,633 (3,633/3,633)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.988;0.998)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito_nucl 13.8333, nucl 13.5, mito 13.5,
cyto_nucl 10.3333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000202745 (
NM_006125
)
(Rho GTPase-activating protein 6; Rho-type GTPase-activating protein 6; Rho-type GTPase-activating protein RhoGAPX-1;)
genome : 11,161,517 - 11,683,821 (522,305)
query : 1 - 3,632 (3,632/3,632)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito_nucl 13.8333, nucl 13.5, mito 13.5,
cyto_nucl 10.3333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000361996 (
ENST00000380718
)
(Rho GTPase-activating protein 6; Rho-type GTPase-activating protein 6; Rho-type GTPase-activating protein RhoGAPX-1;)
genome : 11,161,517 - 11,683,821 (522,305)
query : 1 - 3,632 (3,632/3,632)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito_nucl 13.8333, nucl 13.5, mito 13.5,
cyto_nucl 10.3333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000072725
(
AF177665
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,161,517 - 11,308,598 (147,082)
query : 1 - 2,267 (2,267/2,267)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.988;1.000)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000361995 (
ENST00000380717
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,161,517 - 11,308,598 (147,082)
query : 1 - 2,267 (2,267/2,267)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 17, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000498068
(
AK303444
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,162,134 - 11,369,656 (207,523)
query : 1 - 1,795 (1,795/1,795)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, mito 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000511446 (
ENST00000413512
)
(Rho GTPase-activating protein 6 isoform 4.)
genome : 11,162,134 - 11,369,656 (207,523)
query : 1 - 1,795 (1,795/1,795)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000362010 (
ENST00000380732
)
(Rho GTPase-activating protein 6; Rho-type GTPase-activating protein 6; Rho-type GTPase-activating protein RhoGAPX-1;)
genome : 11,166,770 - 11,682,948 (516,179)
query : 1 - 2,073 (2,073/2,073)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, nucl 12.5, cyto_mito 10, cyto_nucl 9.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056117
HIT000595037 (
ENST00000491514
)
(Rho GTPase-activating protein 6; Rho-type GTPase-activating protein 6; Rho-type GTPase-activating protein RhoGAPX-1;)
genome : 11,187,276 - 11,197,575 (10,300)
query : 10 - 841 (832/841)
3 exons
identity = 0.999
3'(1.000;1.000;0.994)5'
coverage = 0.989
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 16.5, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056117)
HIX0056174
HIT000079658
(
AF436849
)
Representative transcript
(Amelogenin, X isoform; Precursor;)
genome : 11,311,533 - 11,318,881 (7,349)
query : 1 - 835 (835/835)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR004116 : Amelogenin
GO :
0005578 : Cellular Component : proteinaceous extracellular matrix
0007275 : Biological Process : multicellular organismal development
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
Ortholog candidate ( ->
Evola
)
Equus
sp. (Horse) : AB032193
Mus
sp. (Mouse) : BC059090
Canis
sp. (Dog) : ENSCAFT00000018403
Macaca
sp. (Macaque) : ENSMMUT00000011539
Pongo
sp. (Orangutan) : ENSPPYT00000023465
Bos
sp. (Cow) : M63500
Monodelphis
sp. (Opossum) : U43407
Rattus
sp. (Rat) : U60562
Pan
sp. (Chimpanzee) : XM_001143669
HIX0056174
HIT000196654
(
M86932
)
(Amelogenin, X isoform; Precursor;)
genome : 11,311,533 - 11,318,881 (7,349)
query : 1 - 793 (793/793)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR004116 : Amelogenin
GO :
0005578 : Cellular Component : proteinaceous extracellular matrix
0007275 : Biological Process : multicellular organismal development
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, mito 5, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
HIX0056174
HIT000198143 (
NM_001142
)
(Amelogenin, X isoform; Precursor;)
genome : 11,311,533 - 11,318,881 (7,349)
query : 1 - 793 (793/793)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, mito 5, E.R. 3, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
HIX0056174
HIT000318731 (
NM_182680
)
(Amelogenin, X isoform; Precursor;)
genome : 11,311,533 - 11,318,881 (7,349)
query : 1 - 835 (835/835)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
HIX0056174
HIT000318732 (
NM_182681
)
(Amelogenin, X isoform; Precursor;)
genome : 11,311,533 - 11,318,881 (7,349)
query : 1 - 745 (745/745)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, mito 2, E.R. 2, lyso 2, golg 2, E.R._mito 2,
E.R._golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
HIX0056174
HIT000361990 (
ENST00000380712
)
(Amelogenin, X isoform; Precursor;)
genome : 11,311,533 - 11,318,881 (7,349)
query : 1 - 835 (835/835)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
HIX0056174
HIT000361992 (
ENST00000380714
)
(Amelogenin, X isoform; Precursor;)
genome : 11,311,533 - 11,318,881 (7,349)
query : 1 - 793 (793/793)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, mito 5, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
HIX0056174
HIT000307695 (
ENST00000348912
)
(Amelogenin, X isoform; Precursor;)
genome : 11,311,533 - 11,318,873 (7,341)
query : 1 - 737 (737/737)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, mito 2, E.R. 2, lyso 2, golg 2, E.R._mito 2,
E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
HIX0056174
HIT000263290
(
BC069118
)
(Amelogenin, X isoform; Precursor;)
genome : 11,311,533 - 11,317,094 (5,562)
query : 1 - 639 (639/659)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.970
InterPro :
IPR004116 : Amelogenin
GO :
0005578 : Cellular Component : proteinaceous extracellular matrix
0007275 : Biological Process : multicellular organismal development
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, mito 5, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
HIX0056174
HIT000265458
(
BC074951
)
(Amelogenin, X isoform; Precursor;)
genome : 11,311,554 - 11,318,758 (7,205)
query : 1 - 649 (649/649)
6 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.998;1.000)3'
coverage = 1.000
InterPro :
IPR004116 : Amelogenin
GO :
0005578 : Cellular Component : proteinaceous extracellular matrix
0007275 : Biological Process : multicellular organismal development
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, mito 5, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
HIX0056174
HIT000216182
(
S67147
)
(Amelogenin, X isoform; Precursor;)
genome : 11,316,668 - 11,317,093 (426)
query : 1 - 426 (426/426)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
InterPro :
IPR004116 : Amelogenin
GO :
0005578 : Cellular Component : proteinaceous extracellular matrix
0007275 : Biological Process : multicellular organismal development
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 11.5, extr 11, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056174)
HIX0177398
HIT000544120 (
ENST00000446186
)
(Pyridoxal phosphate-dependent transferase domain containing protein.)
genome : 11,352,353 - 11,354,021 (1,669)
query : 1 - 1,190 (1,190/1,190)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 10, cyto_nucl 7, nucl 5.5, cyto 5.5,
extr_plas 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177398)
HIX0056369
HIT000250121
(
AL079282
)
Representative transcript
(Non-protein coding transcript.)
genome : 11,655,894 - 11,656,284 (391)
query : 41 - 431 (391/444)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 0.907
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056369)
HIX0016651
HIT000010527
(
AK027253
)
Representative transcript
(Conserved hypothetical protein.)
genome : 11,679,223 - 11,681,048 (1,826)
query : 1 - 1,826 (1,826/1,893)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.974
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016651)
HIX0177068
HIT000520764 (
ENST00000422830
)
(PDZ domain containing protein.)
genome : 11,722,243 - 11,723,710 (1,468)
query : 1 - 1,468 (1,468/1,468)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.1667, nucl 11, cyto 9, extr 8,
cyto_pero 7.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177068)
HIX0016652
HIT000211757 (
NM_078629
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,776,278 - 11,793,871 (17,594)
query : 1 - 2,344 (2,344/2,359)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 16, cyto 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000070072
(
AF117065
)
Representative transcript
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,776,278 - 11,793,870 (17,593)
query : 1 - 2,342 (2,342/2,342)
13 exons
identity = 0.999
5'(1.000;0.976;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000953 : Chromo/chromo shadow domain
IPR008676 : MRG
IPR016197 : Chromo domain-like
IPR025995 : RNA binding activity-knot of a chromodomain
IPR026541 : MRG domain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 16, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AF117066
Rattus
sp. (Rat) : BC086548
Bos
sp. (Cow) : BC105219
Gallus
sp. (Chicken) : BX933772
Pongo
sp. (Orangutan) : CR860334
Oryzias
sp. (Medaka) : ENSORLT00000005916
Pan
sp. (Chimpanzee) : ENSPTRT00000042980
Tetraodon
sp. (Tetraodon) : GSTENT00027200001
Takifugu
sp. (Fugu) : SINFRUT00000144435
Monodelphis
sp. (Opossum) : XM_001365049
Equus
sp. (Horse) : XM_001488963
Canis
sp. (Dog) : XM_548862
Macaca
sp. (Macaque) : XR_014516
HIX0016652
HIT000119297 (
ENST00000312196
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,776,278 - 11,793,870 (17,593)
query : 1 - 2,343 (2,343/2,343)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 16, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000211756 (
NM_078628
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,776,278 - 11,786,096 (9,819)
query : 1 - 3,524 (3,524/3,564)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, plas 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000041253
(
BC031210
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,776,349 - 11,793,871 (17,523)
query : 5 - 2,278 (2,274/2,293)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 0.998
InterPro :
IPR000953 : Chromo/chromo shadow domain
IPR008676 : MRG
IPR016197 : Chromo domain-like
IPR025995 : RNA binding activity-knot of a chromodomain
IPR026541 : MRG domain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 16, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000087567
(
BC010925
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,776,354 - 11,779,679 (3,326)
query : 5 - 476 (472/504)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.992
InterPro :
IPR000953 : Chromo/chromo shadow domain
IPR008676 : MRG
IPR016197 : Chromo domain-like
IPR025995 : RNA binding activity-knot of a chromodomain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000130460 (
ENST00000337339
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,776,356 - 11,786,096 (9,741)
query : 1 - 3,446 (3,446/3,446)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000422577
(
AK289780
)
(Male-specific lethal 3 homolog isoform c.)
genome : 11,776,356 - 11,783,970 (7,615)
query : 1 - 1,320 (1,320/1,320)
9 exons
identity = 0.999
5'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000953 : Chromo/chromo shadow domain
IPR008676 : MRG
IPR016197 : Chromo domain-like
IPR025995 : RNA binding activity-knot of a chromodomain
IPR026541 : MRG domain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000572729 (
ENST00000468149
)
(Male-specific lethal 3 homolog isoform c.)
genome : 11,776,372 - 11,793,350 (16,979)
query : 1 - 1,646 (1,646/1,646)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 18, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000089228
(
BC017267
)
(Male-specific lethal 3 homolog isoform d.)
genome : 11,776,373 - 11,793,871 (17,499)
query : 1 - 2,247 (2,247/2,274)
13 exons
identity = 0.998
5'(1.000;1.000;1.000;0.980;1.000;0.992;1.000;
1.000;0.996;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000953 : Chromo/chromo shadow domain
IPR008676 : MRG
IPR016197 : Chromo domain-like
IPR025995 : RNA binding activity-knot of a chromodomain
IPR026541 : MRG domain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 15.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000488879
(
AK294255
)
(Male-specific lethal 3 homolog isoform c.)
genome : 11,776,410 - 11,793,350 (16,941)
query : 3 - 1,610 (1,608/1,610)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR008676 : MRG
IPR026541 : MRG domain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 18, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000314928 (
ENST00000361672
)
(Male-specific lethal 3 homolog isoform c.)
genome : 11,776,410 - 11,793,350 (16,941)
query : 1 - 1,608 (1,608/1,608)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 18, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000580921 (
ENST00000476743
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,776,701 - 11,780,338 (3,638)
query : 1 - 560 (560/560)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 9, cyto 8, cyto_nucl 8, extr 6, nucl 6,
mito_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000519302 (
ENST00000421368
)
(Male-specific lethal 3 homolog isoform e.)
genome : 11,776,705 - 11,781,076 (4,372)
query : 1 - 795 (795/795)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 12, mito_nucl 10, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000655769 (
NM_001193270
)
(Male-specific lethal 3 homolog isoform e.)
genome : 11,776,709 - 11,793,871 (17,163)
query : 1 - 2,321 (2,321/2,337)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito_nucl 15.1667, cyto_nucl 12.6667, mito 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000481712 (
ENST00000398527
)
(Male-specific lethal 3 homolog isoform e.)
genome : 11,776,728 - 11,793,574 (16,847)
query : 1 - 2,005 (2,005/2,005)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito_nucl 15.1667, cyto_nucl 12.6667, mito 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000495438
(
AK300814
)
(Male-specific lethal 3 homolog isoform e.)
genome : 11,776,728 - 11,793,574 (16,847)
query : 1 - 2,005 (2,005/2,005)
13 exons
identity = 1.000
5'(1.000;0.988;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000953 : Chromo/chromo shadow domain
IPR008676 : MRG
IPR016197 : Chromo domain-like
IPR025995 : RNA binding activity-knot of a chromodomain
IPR026541 : MRG domain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito_nucl 15.1667, cyto_nucl 12.6667, mito 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000361971 (
ENST00000380693
)
(Male-specific lethal 3 homolog isoform c.)
genome : 11,777,671 - 11,793,870 (16,200)
query : 1 - 2,377 (2,377/2,377)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000203368 (
NM_006800
)
(Male-specific lethal 3 homolog isoform c.)
genome : 11,777,735 - 11,793,871 (16,137)
query : 1 - 2,314 (2,314/2,331)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 15.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000361970 (
ENST00000380692
)
(Male-specific lethal 3 homolog isoform c.)
genome : 11,777,747 - 11,783,765 (6,019)
query : 1 - 1,071 (1,071/1,071)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.5, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000582567 (
ENST00000478462
)
(Male-specific lethal 3 homolog isoform e.)
genome : 11,777,760 - 11,779,173 (1,414)
query : 1 - 549 (549/549)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 8, mito 7, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000008916
(
AK025642
)
(Male-specific lethal 3 homolog isoform e.)
genome : 11,777,761 - 11,793,871 (16,111)
query : 1 - 2,288 (2,288/2,305)
12 exons
identity = 0.998
5'(1.000;1.000;0.990;0.988;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008676 : MRG
IPR026541 : MRG domain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 15, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000586783 (
ENST00000482871
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,778,162 - 11,781,026 (2,865)
query : 1 - 834 (834/834)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 12, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000578123 (
ENST00000473806
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,778,257 - 11,779,701 (1,445)
query : 1 - 452 (452/452)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, E.R. 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000587524 (
ENST00000483645
)
(Male-specific lethal 3 homolog isoform c.)
genome : 11,778,305 - 11,781,043 (2,739)
query : 1 - 549 (549/549)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 10.5, extr 9, nucl 5, extr_plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000499043
(
AK304419
)
(Male-specific lethal 3 homolog isoform c.)
genome : 11,778,341 - 11,782,370 (4,030)
query : 1 - 1,124 (1,124/1,124)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR008676 : MRG
IPR026541 : MRG domain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 15.5, nucl 10.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000597672 (
ENST00000494268
)
(Male-specific lethal 3 homolog isoform c.)
genome : 11,778,341 - 11,782,370 (4,030)
query : 1 - 1,124 (1,124/1,124)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 15.5, nucl 10.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000361969 (
ENST00000380691
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,781,007 - 11,786,803 (5,797)
query : 1 - 589 (589/589)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 9, cyto_pero 9, cyto_plas 9,
cyto_golg 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000003268
(
AK000793
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,781,087 - 11,786,096 (5,010)
query : 1 - 2,700 (2,700/2,740)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000024054
(
AL050178
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,781,996 - 11,793,871 (11,876)
query : 1 - 1,392 (1,392/1,408)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR008676 : MRG
IPR026541 : MRG domain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 3, mito 3, cyto_mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000026592
(
AL713667
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,781,996 - 11,793,871 (11,876)
query : 1 - 1,393 (1,393/1,409)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008676 : MRG
IPR026541 : MRG domain
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 3, mito 3, cyto_mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000571761 (
ENST00000467141
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,783,780 - 11,787,221 (3,442)
query : 1 - 599 (599/599)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, mito_nucl 16.3333, mito 11,
cyto_nucl 10.6667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0016652
HIT000577713 (
ENST00000473380
)
(Male-specific lethal 3 homolog; Male-specific lethal-3 homolog 1; Male-specific lethal-3 protein-like 1; MSL3-like 1;)
genome : 11,786,432 - 11,790,337 (3,906)
query : 1 - 433 (433/433)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 13.5, extr 10, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016652)
HIX0260910
HIT000211261 (
NM_033290
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,350 - 10,851,809 (438,460)
query : 1 - 6,255 (6,255/6,255)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000485260 (
NM_001098624
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,350 - 10,645,779 (232,430)
query : 1 - 6,393 (6,393/6,393)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000551252 (
ENST00000453318
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,350 - 10,645,779 (232,430)
query : 1 - 6,393 (6,393/6,393)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000121338 (
ENST00000317552
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,350 - 10,588,674 (175,325)
query : 1 - 6,463 (6,463/6,463)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000197425 (
NM_000381
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,350 - 10,588,674 (175,325)
query : 1 - 6,463 (6,463/6,463)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000657657 (
NM_033289
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,350 - 10,588,674 (175,325)
query : 1 - 6,349 (6,349/6,349)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000655772 (
NM_001193277
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,350 - 10,544,957 (131,608)
query : 1 - 6,252 (6,252/6,252)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000362065 (
ENST00000380787
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,596 - 10,851,773 (438,178)
query : 1 - 5,973 (5,973/5,973)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000362063 (
ENST00000380785
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,596 - 10,851,762 (438,167)
query : 1 - 6,092 (6,092/6,092)
11 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000362058 (
ENST00000380780
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,596 - 10,557,949 (144,354)
query : 1 - 6,195 (6,195/6,195)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000362057 (
ENST00000380779
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,413,596 - 10,544,995 (131,400)
query : 1 - 6,044 (6,044/6,044)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000063645
(
AF041210
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,414,375 - 10,535,477 (121,103)
query : 1 - 4,929 (4,929/4,929)
9 exons
identity = 0.997
3'(1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cysk 12, cyto_nucl 9.5, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000075750
(
AF269101
)
Representative transcript
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,165 - 10,851,766 (435,602)
query : 30 - 3,555 (3,526/3,575)
11 exons
identity = 0.999
3'(1.000;1.000;0.989)5'
coverage = 0.992
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AF186461
Gallus
sp. (Chicken) : AF374463
Takifugu
sp. (Fugu) : AY539955
Bos
sp. (Cow) : BC140604
Pongo
sp. (Orangutan) : CR857145
Macaca
sp. (Macaque) : DQ147941
Danio
sp. (Zebrafish) : ENSDART00000003293
Monodelphis
sp. (Opossum) : ENSMODT00000022095
Oryzias
sp. (Medaka) : ENSORLT00000005867
Oryzias
sp. (Medaka) : ENSORLT00000022271
Tetraodon
sp. (Tetraodon) : GSTENT00026080001
Takifugu
sp. (Fugu) : SINFRUT00000163226
Pan
sp. (Chimpanzee) : XM_001142309
Equus
sp. (Horse) : XM_001488098
Canis
sp. (Dog) : XM_851408
Mus
sp. (Mouse) : Y14848
HIX0260910
HIT000074596
(
AF230976
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,165 - 10,588,459 (172,295)
query : 1 - 3,432 (3,432/3,452)
10 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000074597
(
AF230977
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,165 - 10,588,459 (172,295)
query : 1 - 3,332 (3,332/3,352)
10 exons
identity = 0.997
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000325789
(
Y13667
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,165 - 10,588,459 (172,295)
query : 1 - 3,432 (3,432/3,452)
10 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000362060 (
ENST00000380782
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,165 - 10,588,459 (172,295)
query : 1 - 3,333 (3,333/3,352)
10 exons
identity = 0.998
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000053946
(
BC053626
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,165 - 10,588,531 (172,367)
query : 1 - 3,505 (3,505/3,521)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000385234
(
AK226104
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,151 - 10,588,492 (172,342)
query : 1 - 3,366 (3,366/3,368)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.999
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000063260
(
AF035360
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,166 - 10,544,853 (128,688)
query : 1 - 3,333 (3,333/3,334)
10 exons
identity = 0.999
3'(1.000;0.968)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000063643
(
AF041208
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,185 - 10,557,949 (141,765)
query : 14 - 3,628 (3,615/3,628)
10 exons
identity = 0.998
3'(1.000;0.973)5'
coverage = 0.996
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000008461
(
AK025187
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,422 - 10,534,959 (118,538)
query : 1 - 2,361 (2,361/2,376)
9 exons
identity = 0.999
3'(1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR001870 : B30.2/SPRY domain
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, mito 10, cyto_nucl 9, nucl 5.5, pero 2,
golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000424012
(
AK291215
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,416,987 - 10,588,556 (171,570)
query : 1 - 2,708 (2,708/2,708)
10 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000491829
(
AK297205
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,417,227 - 10,588,620 (171,394)
query : 1 - 2,382 (2,382/2,382)
11 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000255257
(
AY539962
)
(Midline-1 isoform 2.)
genome : 10,417,430 - 10,533,112 (115,683)
query : 1 - 1,365 (1,365/1,365)
9 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR001870 : B30.2/SPRY domain
IPR003877 : SPRY domain
IPR003879 : Butyrophylin-like
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, mito 10, cyto_nucl 8.5, nucl 4.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000433961
(
AK315095
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,422,908 - 10,588,505 (165,598)
query : 1 - 1,889 (1,889/1,891)
9 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 0.999
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR001870 : B30.2/SPRY domain
IPR003649 : B-box, C-terminal
IPR003961 : Fibronectin type III
IPR006574 : SPRY-associated
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000493685
(
AK299061
)
(Midline-1 isoform 2.)
genome : 10,423,006 - 10,645,788 (222,783)
query : 1 - 1,814 (1,814/1,814)
9 exons
identity = 0.999
3'(1.000;0.996)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR003649 : B-box, C-terminal
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000063641
(
AF041206
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,427,685 - 10,645,727 (218,043)
query : 3 - 1,729 (1,727/1,733)
8 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 0.997
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR003649 : B-box, C-terminal
IPR003961 : Fibronectin type III
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000511828 (
ENST00000413894
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,427,685 - 10,645,727 (218,043)
query : 1 - 1,727 (1,727/1,729)
8 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.999
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000655773 (
NM_001193278
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,437,305 - 10,535,643 (98,339)
query : 1 - 1,926 (1,926/1,926)
7 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 26, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000655774 (
NM_001193279
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,437,305 - 10,535,643 (98,339)
query : 1 - 1,773 (1,773/1,773)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 27, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000655775 (
NM_001193280
)
(Midline-1 isoform 5.)
genome : 10,437,305 - 10,535,643 (98,339)
query : 1 - 1,659 (1,659/1,659)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 27, plas 1, extr 1, cyto 1, mito 1, golg 1,
extr_plas 1, cyto_mito 1, cyto_plas 1, cyto_golg 1
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000255289
(
AY539994
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,437,321 - 10,535,587 (98,267)
query : 1 - 1,854 (1,854/1,854)
7 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR003649 : B-box, C-terminal
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000255317
(
AY540022
)
(Midline-1; EC=6.3.2.-; Midin; Midline 1 RING finger protein; Putative transcription factor XPRF; RING finger protein 59; Tripartite motif-containing protein 18;)
genome : 10,437,321 - 10,535,587 (98,267)
query : 1 - 1,701 (1,701/1,701)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000315 : Zinc finger, B-box
IPR003649 : B-box, C-terminal
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 27, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000255318
(
AY540023
)
(Midline-1 isoform 5.)
genome : 10,437,321 - 10,535,587 (98,267)
query : 1 - 1,587 (1,587/1,587)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR003649 : B-box, C-terminal
IPR017903 : COS domain
IPR017907 : Zinc finger, RING-type, conserved site
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 27, plas 1, extr 1, cyto 1, mito 1, golg 1,
extr_plas 1, cyto_mito 1, cyto_plas 1, cyto_golg 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000255315
(
AY540020
)
(Midline-1 isoform 6.)
genome : 10,443,195 - 10,535,202 (92,008)
query : 1 - 1,481 (1,481/1,481)
3 exons
identity = 0.999
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 9.83333, extr 9, cyto_plas 7.83333,
nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000255290
(
AY539995
)
(Midline-1 isoform 6.)
genome : 10,443,201 - 10,535,202 (92,002)
query : 1 - 814 (814/814)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000315 : Zinc finger, B-box
IPR003649 : B-box, C-terminal
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 12.3333, cyto_plas 11.8333, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
HIX0260910
HIT000255291
(
AY539996
)
(Midline-1 isoform 6.)
genome : 10,443,201 - 10,535,202 (92,002)
query : 1 - 700 (700/700)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR003649 : B-box, C-terminal
IPR027727 : Midline-1
GO :
0005622 : Cellular Component : intracellular
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 10.8333, cyto_plas 10.8333,
extr 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260910)
AC117406.2
10500001-10601061 F -
NCBI
AC002349.1
10601062-10738674 F -
NCBI
50000
10738675-10788674 N
U96409.1
10788675-10925290 F +
NCBI
AC012088.2
10925291-10967634 F +
NCBI
AC073529.15
10967635-11044289 F +
NCBI
U69730.1
11044290-11104714 F +
NCBI
AC003657.1
11104715-11169944 F +
NCBI
AC004467.1
11169945-11243183 F -
NCBI
AC002366.1
11243184-11502238 F +
NCBI
AC130890.4
11502239-11577038 F -
NCBI
AC130886.3
11577039-11654371 F +
NCBI
AC004554.1
11654372-11847508 F +
NCBI
AC073613.16
11847509-11943706 F -
NCBI
AC002980.1
11943707-12083175 F +
NCBI
AC073524.13
12083176-12100000 F +
NCBI