bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0169771
HIT000520560 (
ENST00000422626
)
(GPCR, family 3 protein.)
genome : 39,016,966 - 39,039,591 (22,626)
query : 1 - 1,412 (1,412/1,412)
7 exons
identity = 0.992
5'(1.000;0.930;0.976;1.000;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169771)
HIX0020838
HIT000011856
(
AK055242
)
Representative transcript
(Conserved hypothetical protein.)
genome : 39,064,962 - 39,066,926 (1,965)
query : 1 - 1,965 (1,965/1,965)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, plas 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020838)
HIX0218544
HIT000597380 (
ENST00000493965
)
(Laminin G domain containing protein.)
genome : 39,073,671 - 39,088,470 (14,800)
query : 1 - 765 (765/765)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 14, cyto 12.5, cyto_nucl 7, cysk_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218544)
HIX0218544
HIT000581169 (
ENST00000477002
)
(Laminin G domain containing protein.)
genome : 39,078,815 - 39,086,145 (7,331)
query : 1 - 291 (291/291)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 13, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218544)
HIX0218514
HIT000587388 (
ENST00000483502
)
(Laminin G domain containing protein.)
genome : 39,099,812 - 39,103,911 (4,100)
query : 1 - 770 (770/770)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 11, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218514)
HIX0218514
HIT000453082_04
(
DQ586551
)
Representative transcript
(Non-protein coding transcript.)
genome : 39,100,043 - 39,100,072 (30)
query : 1 - 30 (30/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.968
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218514)
HIX0218514
HIT000546507 (
ENST00000448573
)
(Conserved hypothetical protein.)
genome : 39,103,676 - 39,140,573 (36,898)
query : 1 - 652 (652/652)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218514)
HIX0218514
HIT000541517_01 (
ENST00000443583
)
(Contactin-associated protein-like 3 family protein.)
genome : 39,103,678 - 39,288,312 (184,635)
query : 1 - 2,411 (2,411/2,411)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18.5, extr_plas 10.5, E.R. 6, lyso 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218514)
HIX0218514
HIT000598933 (
ENST00000495573
)
(Concanavalin A-like lectin/glucanase domain containing protein.)
genome : 39,103,688 - 39,109,284 (5,597)
query : 1 - 475 (475/475)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18, nucl 14, cyto 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218514)
HIX0218514
HIT000573597 (
ENST00000469061
)
(Conserved hypothetical protein.)
genome : 39,139,760 - 39,140,614 (855)
query : 1 - 404 (404/417)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 11, cyto 10.5, cysk 8, nucl 6.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218514)
HIX0170219
HIT000551580 (
ENST00000453646
)
(G-patch domain containing protein.)
genome : 39,154,072 - 39,155,476 (1,405)
query : 1 - 1,190 (1,190/1,190)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 14, nucl 8, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170219)
HIX0218514
HIT000358933 (
ENST00000377653
)
(Contactin-associated protein-like 3 family protein.)
genome : 39,172,783 - 39,267,003 (94,221)
query : 1 - 2,741 (2,741/2,741)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13.5, nucl 6.5, extr 2, mito 2,
cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218514)
HIX0218514
HIT000522978 (
ENST00000425044
)
(Conserved hypothetical protein.)
genome : 39,173,791 - 39,174,510 (720)
query : 1 - 720 (720/720)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 9, nucl 5, mito_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218514)
HIX0218514
HIT000546856_01 (
ENST00000448922
)
(Coagulation factor 5/8 C-terminal type domain containing protein.)
genome : 39,193,128 - 39,288,061 (94,934)
query : 1 - 532 (532/532)
4 exons
identity = 0.987
3'(1.000;0.990;0.973;0.976)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218514)
HIX0218514
HIT000604208_01 (
ENST00000503949
)
(Coagulation factor 5/8 C-terminal type domain containing protein.)
genome : 39,193,130 - 39,288,061 (94,932)
query : 1 - 529 (529/529)
4 exons
identity = 0.991
3'(1.000;0.995;1.000;0.953)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 15.5, cyto 9, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218514)
HIX0169205
HIT000535283_01 (
ENST00000437349
)
(Hypothetical protein.)
genome : 39,330,806 - 39,331,113 (308)
query : 1 - 308 (308/308)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11.3333, cyto 10, nucl 7.5,
cyto_pero 6.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169205)
HIX0209142
eHIT000023880 ( ESTsASS_9_255 )
Representative transcript
(Non-protein coding transcript.)
genome : 39,336,558 - 39,341,028 (4,471)
query : 1 - 418 (418/418)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209142)
ESTs used for assembly :
BG209597
HIX0058661
HIT000497193_01
(
AK302569
)
Representative transcript
(Spermatogenesis-associated protein 31A3; Protein FAM75A3;)
genome : 39,355,666 - 39,361,841 (6,176)
query : 1 - 4,141 (4,141/4,141)
4 exons
identity = 0.999
5'(1.000;1.000;0.984;0.999)3'
coverage = 1.000
InterPro :
IPR027970 : Domain of unknown function DUF4599
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 10, nucl 9.5, cyto 9.5, pero 5, plas 3.5,
extr_plas 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058661)
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : ENSCAFT00000021527
Rattus
sp. (Rat) : XM_577554
HIX0058661
HIT000358927 (
ENST00000377647
)
(Spermatogenesis-associated protein 31A3; Protein FAM75A3;)
genome : 39,355,699 - 39,361,956 (6,258)
query : 1 - 4,223 (4,223/4,223)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10, nucl 8.5, plas 7.5,
extr_plas 5.5, extr 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058661)
HIX0058661
HIT000398339 (
NM_001085452
)
(Spermatogenesis-associated protein 31A3; Protein FAM75A3;)
genome : 39,355,699 - 39,361,956 (6,258)
query : 1 - 4,223 (4,223/4,223)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10, nucl 8.5, plas 7.5,
extr_plas 5.5, extr 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058661)
HIX0058661
HIT000577771 (
ENST00000473440
)
(Spermatogenesis-associated protein 31A1.)
genome : 39,357,332 - 39,358,696 (1,365)
query : 1 - 785 (785/785)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 9, cyto 6.5, cyto_pero 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058661)
HIX0169465
HIT000447203_09
(
DQ580672
)
Representative transcript
(Non-protein coding transcript.)
genome : 39,359,231 - 39,359,261 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169465)
HIX0169884
HIT000527489 (
ENST00000429555
)
(Conserved hypothetical protein.)
genome : 39,368,376 - 39,368,790 (415)
query : 1 - 415 (415/415)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, mito 7, extr 3, nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169884)
HIX0169101
HIT000387876_03
(
BC118602
)
Representative transcript
(FAM74 protein family protein.)
genome : 39,371,062 - 39,376,913 (5,852)
query : 1 - 623 (623/623)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR027832 : FAM74 protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 7.5, pero 7, cyto_mito 7, mito 5.5, plas 4.5,
extr_plas 4, extr 2.5, nucl 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169101)
HIX0169101
HIT000569962_01 (
ENST00000465257
)
(FAM74 protein family protein.)
genome : 39,371,240 - 39,371,537 (298)
query : 1 - 298 (298/298)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169101)
HIX0169101
HIT000709001_01 (
ENST00000597221
)
(FAM74 protein family protein.)
genome : 39,371,241 - 39,371,621 (381)
query : 1 - 381 (381/381)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 7, cyto 6.5, cyto_mito 6, plas 5.5, mito 4.5,
extr_plas 4.5, nucl 3, extr 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169101)
HIX0169101
HIT000709461_01 (
ENST00000597685
)
(FAM74 protein family protein.)
genome : 39,371,241 - 39,371,621 (381)
query : 1 - 381 (381/381)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 7, cyto 6.5, cyto_mito 6, plas 5.5, mito 4.5,
extr_plas 4.5, nucl 3, extr 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169101)
HIX0169196
HIT000512947_01 (
ENST00000415013
)
(Hypothetical short protein.)
genome : 39,384,503 - 39,405,302 (20,800)
query : 1 - 476 (476/476)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 9, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169196)
HIX0169196
HIT000525261_01 (
ENST00000427327
)
(Hypothetical short protein.)
genome : 39,384,503 - 39,405,302 (20,800)
query : 1 - 476 (476/476)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 9, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169196)
HIX0169789
HIT000521433 (
ENST00000423499
)
(Conserved hypothetical protein.)
genome : 39,395,734 - 39,397,403 (1,670)
query : 1 - 1,077 (1,077/1,077)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 4, cyto 3, mito 3, cyto_mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169789)
HIX0023216
HIT000358898_01 (
ENST00000377618
)
(Zinc finger protein 658;)
genome : 39,443,804 - 39,464,526 (20,723)
query : 1 - 4,037 (4,037/4,037)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023216)
HIX0023216
HIT000556676_01 (
ENST00000458742
)
(Zinc finger protein 658;)
genome : 39,443,804 - 39,464,526 (20,723)
query : 1 - 4,037 (4,037/4,037)
5 exons
identity = 1.000
3'(1.000;1.000;0.992;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023216)
HIX0023216
HIT000563663_01 (
NR_027861
)
(Zinc finger protein 658;)
genome : 39,443,819 - 39,447,188 (3,370)
query : 1 - 3,370 (3,370/3,384)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023216)
HIX0023216
HIT000398623_02 (
NR_003528
)
(Zinc finger protein 729.)
genome : 39,443,814 - 39,464,526 (20,713)
query : 1 - 4,028 (4,028/4,028)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023216)
HIX0023216
HIT000714561_01 (
ENST00000602828
)
(Zinc finger protein 658;)
genome : 39,443,817 - 39,447,188 (3,372)
query : 1 - 3,372 (3,372/3,372)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023216)
HIX0023216
HIT000020549_03
(
AK095694
)
Representative transcript
(Zinc finger protein 658;)
genome : 39,444,302 - 39,447,188 (2,887)
query : 1 - 2,887 (2,887/2,887)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023216)
Ortholog candidate ( ->
Evola
)
Equus
sp. (Horse) : XM_001917647
Canis
sp. (Dog) : XM_548503
HIX0023216
HIT000501057_01
(
BC137089
)
(Zinc finger protein 729.)
genome : 39,444,347 - 39,447,188 (2,842)
query : 1 - 2,842 (2,842/2,842)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023216)
HIX0023216
HIT000109974_03 (
ENST00000266116
)
(Zinc finger protein 729.)
genome : 39,444,497 - 39,457,014 (12,518)
query : 8 - 3,193 (3,186/3,193)
3 exons
identity = 0.999
3'(1.000;1.000;0.985)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023216)
HIX0169257
HIT000521568_01 (
ENST00000423634
)
(S-phase kinase-associated protein 1-like family protein.)
genome : 39,485,380 - 39,485,866 (487)
query : 1 - 487 (487/487)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 15.6667, cyto_plas 13.8333, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169257)
HIX0169257
HIT000527214_01 (
ENST00000429280
)
(S-phase kinase-associated protein 1-like family protein.)
genome : 39,485,380 - 39,485,866 (487)
query : 1 - 487 (487/487)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 15.6667, cyto_plas 13.8333, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169257)
HIX0218709
HIT000711025 (
ENST00000599266
)
(Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain containing protein.)
genome : 39,631,025 - 39,632,395 (1,371)
query : 1 - 1,371 (1,371/1,371)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11, cyto 7.5, mito 6, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218709)
HIX0169275
HIT000536279_01 (
ENST00000438345
)
(3-beta hydroxysteroid dehydrogenase/isomerase domain containing protein.)
genome : 39,651,895 - 39,652,396 (502)
query : 1 - 502 (502/502)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10.5, mito 7, nucl 3.5,
E.R._mito 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169275)
HIX0169275
HIT000526512_01 (
ENST00000428578
)
(3-beta hydroxysteroid dehydrogenase/isomerase domain containing protein.)
genome : 39,651,897 - 39,652,392 (496)
query : 1 - 496 (496/496)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10.5, mito 7, nucl 3.5,
E.R._mito 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169275)
HIX0169630
HIT000510401 (
ENST00000412467
)
(ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain containing protein.)
genome : 39,654,198 - 39,655,518 (1,321)
query : 1 - 1,321 (1,321/1,321)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, cyto_nucl 8, extr 7, cyto 7, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169630)
HIX0218671
HIT000604208_02 (
ENST00000503949
)
(Coagulation factor 5/8 C-terminal type domain containing protein.)
genome : 39,722,432 - 39,817,308 (94,877)
query : 1 - 529 (529/529)
4 exons
identity = 0.991
3'(1.000;0.995;1.000;0.953)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 15.5, cyto 9, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218671)
HIX0169206
HIT000535283_02 (
ENST00000437349
)
(Hypothetical protein.)
genome : 39,860,052 - 39,860,359 (308)
query : 1 - 308 (308/308)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11.3333, cyto 10, nucl 7.5,
cyto_pero 6.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169206)
HIX0209158
eHIT000024474 ( ESTsASS_9_849 )
Representative transcript
(Non-protein coding transcript.)
genome : 39,865,806 - 39,870,282 (4,477)
query : 1 - 418 (418/418)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209158)
ESTs used for assembly :
BG209597_dup2
HIX0058660
HIT000497193_02
(
AK302569
)
Representative transcript
(Spermatogenesis-associated protein 31A3; Protein FAM75A3;)
genome : 39,884,942 - 39,891,092 (6,151)
query : 1 - 4,141 (4,141/4,141)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR027970 : Domain of unknown function DUF4599
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 10, nucl 9.5, cyto 9.5, pero 5, plas 3.5,
extr_plas 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058660)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AY842249
Rattus
sp. (Rat) : BC085936
HIX0058660
HIT000366642 (
NM_001040065
)
(Spermatogenesis-associated protein 31A3; Protein FAM75A3;)
genome : 39,884,975 - 39,891,210 (6,236)
query : 1 - 4,226 (4,226/4,226)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10, nucl 8.5, plas 7.5,
extr_plas 5.5, extr 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058660)
HIX0058660
HIT000554117 (
ENST00000456183
)
(Spermatogenesis-associated protein 31A3; Protein FAM75A3;)
genome : 39,884,975 - 39,891,210 (6,236)
query : 1 - 4,226 (4,226/4,226)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10, nucl 8.5, plas 7.5,
extr_plas 5.5, extr 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058660)
HIX0058660
HIT000503112
(
BC146855
)
(Spermatogenesis-associated protein 31A3; Protein FAM75A3;)
genome : 39,884,983 - 39,891,111 (6,129)
query : 1 - 4,119 (4,119/4,119)
4 exons
identity = 0.999
5'(1.000;1.000;0.984;0.999)3'
coverage = 1.000
InterPro :
IPR027970 : Domain of unknown function DUF4599
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 9.5, plas 7.5, nucl 7.5,
extr_plas 5.5, extr 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058660)
HIX0169466
HIT000447203_10
(
DQ580672
)
Representative transcript
(Non-protein coding transcript.)
genome : 39,888,482 - 39,888,512 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169466)
HIX0169211
HIT000514581_01 (
ENST00000416647
)
(6-pyruvoyl tetrahydropterin synthase/QueD family protein protein.)
genome : 39,897,660 - 39,897,987 (328)
query : 1 - 328 (328/328)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 11, extr 3, nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169211)
HIX0169211
HIT000542737_01 (
ENST00000444803
)
(Hypothetical protein.)
genome : 39,897,704 - 39,897,990 (287)
query : 1 - 287 (287/287)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 7, extr 6, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169211)
HIX0169102
HIT000562987 (
NR_026803
)
(FAM74 protein family protein.)
genome : 39,900,200 - 39,907,240 (7,041)
query : 1 - 1,790 (1,790/1,790)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 7.5, pero 7, cyto_mito 7, mito 5.5, plas 4.5,
extr_plas 4, extr 2.5, nucl 2, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169102)
HIX0169102
HIT000532453 (
ENST00000434519
)
(FAM74 protein family protein.)
genome : 39,900,338 - 39,907,240 (6,903)
query : 1 - 1,652 (1,652/1,652)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 7.5, pero 7, cyto_mito 7, mito 5.5, plas 4.5,
extr_plas 4, extr 2.5, nucl 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169102)
HIX0169102
HIT000387876_04
(
BC118602
)
Representative transcript
(FAM74 protein family protein.)
genome : 39,900,346 - 39,906,219 (5,874)
query : 1 - 623 (623/623)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR027832 : FAM74 protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 7.5, pero 7, cyto_mito 7, mito 5.5, plas 4.5,
extr_plas 4, extr 2.5, nucl 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169102)
HIX0169102
HIT000569962_02 (
ENST00000465257
)
(FAM74 protein family protein.)
genome : 39,900,524 - 39,900,821 (298)
query : 1 - 298 (298/298)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169102)
HIX0169102
HIT000709001_02 (
ENST00000597221
)
(FAM74 protein family protein.)
genome : 39,900,525 - 39,900,905 (381)
query : 1 - 381 (381/381)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 7, cyto 6.5, cyto_mito 6, plas 5.5, mito 4.5,
extr_plas 4.5, nucl 3, extr 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169102)
HIX0169102
HIT000709461_02 (
ENST00000597685
)
(FAM74 protein family protein.)
genome : 39,900,525 - 39,900,905 (381)
query : 1 - 381 (381/381)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 7, cyto 6.5, cyto_mito 6, plas 5.5, mito 4.5,
extr_plas 4.5, nucl 3, extr 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169102)
HIX0169197
HIT000512947_02 (
ENST00000415013
)
(Hypothetical short protein.)
genome : 39,913,804 - 39,934,589 (20,786)
query : 1 - 476 (476/476)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 9, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169197)
HIX0169197
HIT000525261_02 (
ENST00000427327
)
(Hypothetical short protein.)
genome : 39,913,804 - 39,934,589 (20,786)
query : 1 - 476 (476/476)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 9, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169197)
HIX0169116
HIT000531548 (
ENST00000433614
)
(Conserved hypothetical protein.)
genome : 39,925,026 - 39,926,970 (1,945)
query : 1 - 1,125 (1,125/1,125)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13, cyto 9.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169116)
HIX0169116
HIT000347475_02 (
ENST00000366195
)
(Hypothetical protein.)
genome : 39,925,743 - 39,926,970 (1,228)
query : 1 - 408 (408/419)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13, cyto 9.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169116)
HIX0169835
HIT000524113 (
ENST00000426179
)
(Conserved hypothetical protein.)
genome : 40,028,620 - 40,032,417 (3,798)
query : 1 - 3,798 (3,798/3,798)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.1667, cyto 13.5, nucl 9.5,
cyto_plas 9.16667, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169835)
HIX0170204
HIT000550568 (
ENST00000452634
)
(GPCR, family 3 protein.)
genome : 40,063,116 - 40,085,739 (22,624)
query : 1 - 1,422 (1,422/1,422)
7 exons
identity = 0.996
3'(0.999;0.993;1.000;1.000;1.000;0.967;0.984)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170204)
HIX0169815
HIT000523185_01 (
ENST00000425251
)
(GPCR, family 3 protein.)
genome : 40,063,118 - 40,085,739 (22,622)
query : 1 - 1,600 (1,600/1,600)
7 exons
identity = 0.996
5'(0.997;0.993;1.000;1.000;1.000;0.941;0.985)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169815)
HIX0025880
HIT000549384 (
ENST00000451450
)
(Laminin G domain containing protein.)
genome : 40,293,025 - 40,337,495 (44,471)
query : 1 - 1,914 (1,914/1,914)
11 exons
identity = 0.993
5'(0.994;0.962;0.982;1.000;1.000;0.996;0.993;
1.000;0.996;0.992;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, extr 9, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025880)
HIX0025880
HIT000128417 (
ENST00000333554
)
(Contactin-associated protein-like 3 family protein.)
genome : 40,307,346 - 40,339,528 (32,183)
query : 1 - 3,601 (3,601/3,601)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 8, nucl 7.5, cyto 7.5, mito 7, plas 6,
E.R. 3, extr_plas 3, cysk_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025880)
HIX0025880
HIT000453082_05
(
DQ586551
)
Representative transcript
(Non-protein coding transcript.)
genome : 40,311,210 - 40,311,239 (30)
query : 1 - 30 (30/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.968
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025880)
HIX0169816
HIT000523185_02 (
ENST00000425251
)
(GPCR, family 3 protein.)
genome : 40,371,838 - 40,394,460 (22,623)
query : 1 - 1,600 (1,600/1,600)
7 exons
identity = 0.996
5'(0.999;0.993;1.000;1.000;1.000;0.941;0.985)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169816)
HIX0170228
HIT000552190 (
ENST00000454256
)
(Conserved hypothetical protein.)
genome : 40,479,774 - 40,481,174 (1,401)
query : 1 - 1,186 (1,186/1,186)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 11, extr 7, nucl 3.5,
extr_plas 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170228)
HIX0034795
HIT000482713 (
ENST00000399669
)
(Contactin-associated protein-like 3B precursor.)
genome : 40,491,622 - 40,633,282 (141,661)
query : 1 - 1,477 (1,477/1,477)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, lyso 4, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034795)
HIX0034795
HIT000007531
(
AK024257
)
Representative transcript
(Contactin-associated protein-like 3 family protein.)
genome : 40,498,481 - 40,633,697 (135,217)
query : 24 - 3,198 (3,175/3,198)
9 exons
identity = 0.993
3'(0.998;1.000;0.989;0.985;0.993;1.000)5'
coverage = 0.993
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR001791 : Laminin G domain
IPR008979 : Galactose-binding domain-like
IPR013320 : Concanavalin A-like lectin/glucanase domain
IPR028873 : Contactin-associated protein-like 3
GO :
0007155 : Biological Process : cell adhesion
0016021 : Cellular Component : integral component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, nucl 8, extr 2, mito 2, cysk 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034795)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK141609
Oryzias
sp. (Medaka) : ENSORLT00000005536
Tetraodon
sp. (Tetraodon) : GSTENT00015199001
Rattus
sp. (Rat) : XM_001064593
Macaca
sp. (Macaque) : XM_001114122
Danio
sp. (Zebrafish) : XM_687543
HIX0008061
HIT000077782
(
AF333769
)
Representative transcript
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,072,765 - 39,288,159 (215,395)
query : 9 - 5,096 (5,088/5,119)
24 exons
identity = 0.996
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.988;0.977;0.994;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.990;0.991;0.930)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR001791 : Laminin G domain
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR008979 : Galactose-binding domain-like
IPR013320 : Concanavalin A-like lectin/glucanase domain
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
IPR028873 : Contactin-associated protein-like 3
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, extr_plas 13.5, extr 4, pero 4, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0008061
HIT000211429 (
NM_033655
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,072,764 - 39,288,300 (215,537)
query : 1 - 5,229 (5,229/5,229)
24 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20, extr_plas 13.5, pero 5, extr 3, E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0008061
HIT000114871 (
ENST00000297668
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,072,764 - 39,288,135 (215,372)
query : 1 - 5,064 (5,064/5,064)
24 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20, extr_plas 13.5, pero 5, extr 3, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0008061
HIT000390790
(
BC132737
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,073,734 - 39,817,452 (743,719)
query : 1 - 3,921 (3,921/3,921)
23 exons
identity = 0.998
3'(1.000;1.000;0.996;0.977;1.000;1.000;1.000;
1.000;1.000;0.981;0.995;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR001791 : Laminin G domain
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR008979 : Galactose-binding domain-like
IPR013320 : Concanavalin A-like lectin/glucanase domain
IPR014716 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
IPR028873 : Contactin-associated protein-like 3
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18.5, extr_plas 12, pero 6, E.R. 3, mito_pero 3,
cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK141609
Bos
sp. (Cow) : BT029872
Gallus
sp. (Chicken) : ENSGALT00000018891
Macaca
sp. (Macaque) : ENSMMUT00000044235
Oryzias
sp. (Medaka) : ENSORLT00000002351
Pongo
sp. (Orangutan) : ENSPPYT00000022197
Tetraodon
sp. (Tetraodon) : GSTENT00015208001
Takifugu
sp. (Fugu) : SINFRUT00000144870
Rattus
sp. (Rat) : XM_001064593
Monodelphis
sp. (Opossum) : XM_001369432
Danio
sp. (Zebrafish) : XM_687543
Canis
sp. (Dog) : XM_847106
Pan
sp. (Chimpanzee) : XR_025137
HIX0008061
HIT000502560
(
BC144130
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,073,734 - 39,817,452 (743,719)
query : 1 - 3,829 (3,829/3,829)
22 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.981;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR001791 : Laminin G domain
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR008979 : Galactose-binding domain-like
IPR013320 : Concanavalin A-like lectin/glucanase domain
IPR028873 : Contactin-associated protein-like 3
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, extr_plas 11.5, E.R. 7, lyso 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0008061
HIT000358936 (
ENST00000377656
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,073,734 - 39,288,205 (214,472)
query : 1 - 3,921 (3,921/3,921)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17.5, extr_plas 12, pero 6, extr 3.5, E.R. 3,
mito_pero 3, cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0008061
HIT000001430
(
AB051501
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,084,969 - 39,817,442 (732,474)
query : 1 - 5,248 (5,248/5,248)
21 exons
identity = 0.991
3'(0.984;1.000;1.000;1.000;0.994;1.000;0.981;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.995;0.982;0.970;0.940)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, extr_plas 12, E.R. 6, lyso 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0008061
HIT000311886 (
ENST00000358144
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,084,974 - 39,239,171 (154,198)
query : 1 - 4,885 (4,885/4,885)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0008061
HIT000123684 (
ENST00000323947
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,117,920 - 39,288,092 (170,173)
query : 1 - 2,166 (2,166/2,166)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, extr_plas 11.5, E.R. 7, lyso 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0008061
HIT000488905
(
AK294281
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,117,920 - 39,288,092 (170,173)
query : 1 - 2,166 (2,166/2,166)
12 exons
identity = 0.999
3'(0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR001791 : Laminin G domain
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR008979 : Galactose-binding domain-like
IPR013320 : Concanavalin A-like lectin/glucanase domain
IPR028873 : Contactin-associated protein-like 3
GO :
0007155 : Biological Process : cell adhesion
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, extr_plas 11.5, E.R. 7, lyso 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0008061
HIT000013447
(
AK056833
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,117,924 - 39,817,547 (699,624)
query : 1 - 2,649 (2,649/2,649)
14 exons
identity = 0.998
3'(0.988;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.997)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR001791 : Laminin G domain
IPR002181 : Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
IPR008979 : Galactose-binding domain-like
IPR013320 : Concanavalin A-like lectin/glucanase domain
IPR028873 : Contactin-associated protein-like 3
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, extr_plas 12.5, E.R. 5, lyso 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0008061
HIT000358939 (
ENST00000377659
)
(Contactin-associated protein-like 3; Cell recognition molecule Caspr3; Precursor;)
genome : 39,117,924 - 39,288,300 (170,377)
query : 1 - 2,649 (2,649/2,649)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, extr_plas 12.5, E.R. 5, lyso 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008061)
HIX0209142
eHIT000023880 ( ESTsASS_9_255 )
Representative transcript
(Non-protein coding transcript.)
genome : 39,336,558 - 39,341,028 (4,471)
query : 1 - 418 (418/418)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209142)
ESTs used for assembly :
BG209597
HIX0209158
eHIT000024474 ( ESTsASS_9_849 )
Representative transcript
(Non-protein coding transcript.)
genome : 39,865,806 - 39,870,282 (4,477)
query : 1 - 418 (418/418)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209158)
ESTs used for assembly :
BG209597_dup2
AL353729.17
39000001-39187642 F -
NCBI
AL162501.11
39187643-39304206 F -
NCBI
BX005214.7
39304207-39429102 F +
NCBI
BX248098.7
39429103-39548286 F -
NCBI
AL590812.9
39548287-39663686 F +
NCBI
50000
39663687-39713686 N
BX088645.7
39713687-39866309 F +
NCBI
BX664726.5
39866310-39974796 F -
NCBI
50000
39974797-40024796 N
AL353791.7
40024797-40233029 F +
NCBI
50000
40233030-40283029 N
AL592525.10
40283030-40425834 F +
NCBI
50000
40425835-40475834 N
AL162233.14
40475835-40600000 F -
NCBI