bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0018591
HIT000622659 (
ENST00000523378
)
(Squalene/phytoene synthase family protein.)
genome : 95,907,995 - 96,059,318 (151,324)
query : 1 - 949 (949/949)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 16, cyto_plas 10.3333, nucl 6,
extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000479466 (
ENST00000396113
)
(Squalene/phytoene synthase family protein.)
genome : 95,908,041 - 96,070,938 (162,898)
query : 1 - 2,549 (2,549/2,549)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16.1667, cyto_plas 11.8333,
nucl 5.5, extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000618499 (
ENST00000519136
)
(Squalene/phytoene synthase family protein.)
genome : 95,908,065 - 96,059,259 (151,195)
query : 1 - 816 (816/816)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16.1667, cyto_plas 12.3333,
nucl 4.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000479464 (
ENST00000396111
)
(Squalene/phytoene synthase family protein.)
genome : 95,970,236 - 96,070,938 (100,703)
query : 1 - 1,869 (1,869/1,869)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16.1667, cyto_plas 11.8333,
nucl 5.5, extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000331823
(
AY444560
)
(NADH dehydrogenase (ubiquinone) complex I, assembly factor 6; Putative phytoene synthase; Precursor;)
genome : 95,970,236 - 96,070,177 (99,942)
query : 1 - 1,108 (1,108/1,110)
10 exons
identity = 0.994
5'(0.981;0.967;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.998
InterPro :
IPR002060 : Squalene/phytoene synthase
IPR008949 : Isoprenoid synthase domain
GO :
0009058 : Biological Process : biosynthetic process
0016740 : Molecular Function : transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000621151 (
ENST00000521840
)
(Conserved hypothetical protein.)
genome : 95,993,136 - 96,001,576 (8,441)
query : 1 - 1,057 (1,057/1,057)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13.5, cyto 10.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000641939 (
ENST00000542894
)
(Squalene/phytoene synthase family protein.)
genome : 95,993,161 - 96,070,179 (77,019)
query : 1 - 860 (860/860)
9 exons
identity = 0.993
5'(0.981;0.967;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000015247
(
AK074467
)
(Conserved hypothetical protein.)
genome : 95,999,109 - 96,001,395 (2,287)
query : 1 - 2,288 (2,288/2,310)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto 9.5, cyto_nucl 8, mito 7, nucl 3.5,
E.R._mito 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000213685 (
NM_152416
)
(Squalene/phytoene synthase family protein.)
genome : 96,037,214 - 96,070,944 (33,731)
query : 1 - 1,804 (1,804/1,804)
9 exons
identity = 0.997
5'(1.000;0.981;0.967;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000479477 (
ENST00000396124
)
(Squalene/phytoene synthase family protein.)
genome : 96,037,214 - 96,070,938 (33,725)
query : 1 - 1,798 (1,798/1,798)
9 exons
identity = 0.997
5'(1.000;0.981;0.967;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
eHIT000023364 ( ESTsASS_8_711 )
(Non-protein coding transcript.)
genome : 96,037,219 - 96,070,513 (33,295)
query : 1 - 1,368 (1,368/1,368)
9 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
ESTs used for assembly :
BP275471,AL522944,DC365987,AW023178
BU956173,DA897677,BX282282,H88416
AW582520,CN344829,BF030925
HIX0018591
HIT000040472
(
BC028166
)
Representative transcript
(NADH dehydrogenase (ubiquinone) complex I, assembly factor 6; Putative phytoene synthase; Precursor;)
genome : 96,037,222 - 96,070,180 (32,959)
query : 1 - 1,373 (1,373/1,438)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008949 : Isoprenoid synthase domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20, plas 3, extr 2, nucl 2, cyto 2, cyto_nucl 2,
lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000617641 (
ENST00000518258
)
(Isoprenoid synthase domain containing protein.)
genome : 96,037,222 - 96,070,180 (32,959)
query : 1 - 1,373 (1,373/1,373)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20, plas 3, extr 2, nucl 2, cyto 2, cyto_nucl 2,
lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000622618 (
ENST00000523337
)
(Isoprenoid synthase domain containing protein.)
genome : 96,037,234 - 96,059,315 (22,082)
query : 1 - 796 (796/796)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20, plas 3, extr 2, nucl 2, cyto 2, cyto_nucl 2,
lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000617364 (
ENST00000517976
)
(Isoprenoid synthase domain containing protein.)
genome : 96,037,249 - 96,070,174 (32,926)
query : 1 - 1,196 (1,196/1,196)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, extr 9, cyto 8, cyto_pero 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000619966 (
ENST00000520632
)
(Isoprenoid synthase domain containing protein.)
genome : 96,037,261 - 96,059,263 (22,003)
query : 1 - 845 (845/845)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, extr 8, cyto 8, cyto_pero 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000493255
(
AK298631
)
(NADH dehydrogenase (ubiquinone) complex I, assembly factor 6; Putative phytoene synthase; Precursor;)
genome : 96,037,294 - 96,070,302 (33,009)
query : 1 - 1,082 (1,082/1,082)
9 exons
identity = 0.994
5'(1.000;0.981;0.967;1.000;1.000;1.000;1.000;
1.000;0.996)3'
coverage = 1.000
InterPro :
IPR002060 : Squalene/phytoene synthase
IPR008949 : Isoprenoid synthase domain
GO :
0009058 : Biological Process : biosynthetic process
0016740 : Molecular Function : transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 10, mito_pero 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000621973 (
ENST00000522683
)
(Isoprenoid synthase domain containing protein.)
genome : 96,037,294 - 96,048,629 (11,336)
query : 1 - 582 (582/582)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20, plas 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000112762 (
ENST00000286687
)
(Squalene/phytoene synthase family protein.)
genome : 96,037,296 - 96,088,396 (51,101)
query : 1 - 1,474 (1,474/1,474)
10 exons
identity = 0.996
5'(1.000;0.981;0.967;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10.5, extr 10, cyto_mito 9.66667, cyto 7,
cyto_nucl 7, cyto_pero 5.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000496038
(
AK301414
)
(NADH dehydrogenase (ubiquinone) complex I, assembly factor 6; Putative phytoene synthase; Precursor;)
genome : 96,037,296 - 96,088,396 (51,101)
query : 1 - 1,474 (1,474/1,474)
10 exons
identity = 0.996
5'(1.000;0.981;0.967;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002060 : Squalene/phytoene synthase
IPR008949 : Isoprenoid synthase domain
GO :
0009058 : Biological Process : biosynthetic process
0016740 : Molecular Function : transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10.5, extr 10, cyto_mito 9.66667, cyto 7,
cyto_nucl 7, cyto_pero 5.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000620085 (
ENST00000520757
)
(Squalene/phytoene synthase family protein.)
genome : 96,037,296 - 96,088,396 (51,101)
query : 1 - 1,474 (1,474/1,474)
10 exons
identity = 0.996
5'(1.000;0.981;0.967;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10.5, extr 10, cyto_mito 9.66667, cyto 7,
cyto_nucl 7, cyto_pero 5.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000552292 (
ENST00000454358
)
(Squalene/phytoene synthase family protein.)
genome : 96,037,296 - 96,070,164 (32,869)
query : 1 - 946 (946/946)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 16.1667, cyto_plas 11.8333,
nucl 5.5, extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000617983 (
ENST00000518608
)
(Conserved hypothetical protein.)
genome : 96,037,296 - 96,057,878 (20,583)
query : 1 - 543 (543/561)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.968
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 7.5, cyto_mito 6.83333,
cyto_nucl 5.16667, cyto 4.5, cyto_pero 3.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000619152 (
ENST00000519804
)
(Squalene/phytoene synthase family protein.)
genome : 96,046,877 - 96,059,282 (12,406)
query : 1 - 419 (419/419)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 16.6667, cyto_plas 12.1667, nucl 5,
extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0018591
HIT000622467 (
ENST00000523184
)
(Conserved hypothetical protein.)
genome : 96,060,694 - 96,128,683 (67,990)
query : 1 - 732 (732/732)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 13, cyto 9, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0007660
HIT000602438 (
ENST00000501164
)
(Hypothetical short protein.)
genome : 96,079,036 - 96,085,148 (6,113)
query : 1 - 2,632 (2,632/2,632)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 9, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007660)
HIX0007660
HIT000018057
(
AK093190
)
Representative transcript
(Conserved hypothetical protein.)
genome : 96,079,037 - 96,085,148 (6,112)
query : 1 - 2,631 (2,631/2,631)
2 exons
identity = 0.998
3'(0.998;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 9, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007660)
HIX0007660
HIT000617255 (
ENST00000517864
)
(Conserved hypothetical protein.)
genome : 96,081,152 - 96,085,410 (4,259)
query : 1 - 566 (566/566)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007660)
HIX0208585
HIT000617973 (
ENST00000518598
)
(Conserved hypothetical protein.)
genome : 96,083,960 - 96,100,152 (16,193)
query : 1 - 794 (794/794)
4 exons
identity = 0.996
3'(1.000;1.000;0.972;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, nucl 10.5, cyto_nucl 8.5, cyto 5.5,
E.R._mito 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208585)
HIX0007660
HIT000389748
(
BC128221
)
(Hypothetical protein.)
genome : 96,084,953 - 96,085,849 (897)
query : 1 - 897 (897/897)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007660)
HIX0007660
HIT000389749
(
BC128222
)
(Hypothetical protein.)
genome : 96,084,953 - 96,085,849 (897)
query : 1 - 805 (805/805)
2 exons
identity = 0.999
3'(1.000;0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 12, extr 10, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007660)
HIX0007660
HIT000659843 (
NR_037484
)
(Non-protein coding transcript.)
genome : 96,085,139 - 96,085,224 (86)
query : 1 - 86 (86/86)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007660)
HIX0007660
HIT000692062 (
ENST00000580142
)
(Non-protein coding transcript.)
genome : 96,085,139 - 96,085,224 (86)
query : 1 - 86 (86/86)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007660)
HIX0209096
HIT000659369 (
NR_036105
)
(Non-protein coding transcript.)
genome : 96,085,142 - 96,085,221 (80)
query : 1 - 80 (80/80)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209096)
HIX0018591
HIT000620385 (
ENST00000521063
)
(Hypothetical short protein.)
genome : 96,112,622 - 96,115,685 (3,064)
query : 1 - 712 (712/712)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 14, cyto 9, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
HIX0007662
HIT000209319 (
NM_024613
)
(Pleckstrin homology domain-containing family F member 2; PH domain-containing family F member 2; PH and FYVE domain-containing protein 2; Phafin-2; Zinc finger FYVE domain-containing protein 18;)
genome : 96,145,949 - 96,168,913 (22,965)
query : 1 - 2,965 (2,965/2,977)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 8, nucl 7, extr_plas 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007662)
HIX0007662
HIT000029203
(
AL834473
)
Representative transcript
(Pleckstrin homology domain-containing family F member 2; PH domain-containing family F member 2; PH and FYVE domain-containing protein 2; Phafin-2; Zinc finger FYVE domain-containing protein 18;)
genome : 96,146,032 - 96,168,911 (22,880)
query : 7 - 2,886 (2,880/2,905)
2 exons
identity = 0.999
5'(0.991;1.000)3'
coverage = 0.997
InterPro :
IPR000306 : FYVE zinc finger
IPR001849 : Pleckstrin homology domain
IPR011011 : Zinc finger, FYVE/PHD-type
IPR017455 : Zinc finger, FYVE-related
GO :
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 8, nucl 7, extr_plas 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007662)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ719599
Mus
sp. (Mouse) : BC039276
Danio
sp. (Zebrafish) : BC047820
Bos
sp. (Cow) : BC134679
Tetraodon
sp. (Tetraodon) : CR648063
Canis
sp. (Dog) : ENSCAFT00000014985
Equus
sp. (Horse) : ENSECAT00000004552
Oryzias
sp. (Medaka) : ENSORLT00000019263
Pongo
sp. (Orangutan) : ENSPPYT00000021885
Pan
sp. (Chimpanzee) : ENSPTRT00000037814
Takifugu
sp. (Fugu) : SINFRUT00000161270
Monodelphis
sp. (Opossum) : XM_001368954
HIX0007662
HIT000120486 (
ENST00000315367
)
(Pleckstrin homology domain-containing family F member 2; PH domain-containing family F member 2; PH and FYVE domain-containing protein 2; Phafin-2; Zinc finger FYVE domain-containing protein 18;)
genome : 96,146,032 - 96,168,912 (22,881)
query : 1 - 2,881 (2,881/2,881)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 8, nucl 7, extr_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007662)
HIX0007662
HIT000035464
(
BC011806
)
(Pleckstrin homology domain-containing family F member 2; PH domain-containing family F member 2; PH and FYVE domain-containing protein 2; Phafin-2; Zinc finger FYVE domain-containing protein 18;)
genome : 96,146,049 - 96,167,805 (21,757)
query : 1 - 1,757 (1,757/1,774)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000306 : FYVE zinc finger
IPR001849 : Pleckstrin homology domain
IPR011011 : Zinc finger, FYVE/PHD-type
IPR017455 : Zinc finger, FYVE-related
GO :
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 8, nucl 7, extr_plas 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007662)
HIX0007662
HIT000006523
(
AK023249
)
(Pleckstrin homology domain-containing family F member 2; PH domain-containing family F member 2; PH and FYVE domain-containing protein 2; Phafin-2; Zinc finger FYVE domain-containing protein 18;)
genome : 96,146,176 - 96,168,912 (22,737)
query : 1 - 2,737 (2,737/2,737)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000306 : FYVE zinc finger
IPR001849 : Pleckstrin homology domain
IPR011011 : Zinc finger, FYVE/PHD-type
IPR017455 : Zinc finger, FYVE-related
GO :
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 8, nucl 7, extr_plas 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007662)
HIX0007662
HIT000618866 (
ENST00000519516
)
(Pleckstrin homology domain-containing family F member 2; PH domain-containing family F member 2; PH and FYVE domain-containing protein 2; Phafin-2; Zinc finger FYVE domain-containing protein 18;)
genome : 96,146,304 - 96,167,146 (20,843)
query : 1 - 1,144 (1,144/1,144)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 8, nucl 7, extr_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007662)
HIX0007662
HIT000079626
(
AF434819
)
(Pleckstrin homology domain-containing family F member 2; PH domain-containing family F member 2; PH and FYVE domain-containing protein 2; Phafin-2; Zinc finger FYVE domain-containing protein 18;)
genome : 96,166,273 - 96,167,022 (750)
query : 1 - 750 (750/750)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR000306 : FYVE zinc finger
IPR001849 : Pleckstrin homology domain
IPR011011 : Zinc finger, FYVE/PHD-type
IPR017455 : Zinc finger, FYVE-related
GO :
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 8, nucl 7, extr_plas 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007662)
HIX0201335
pHIT000107108 ( pHIT000107108 )
Representative transcript
(Hypothetical short protein.)
genome : 96,187,382 - 96,243,968 (56,587)
query : 1 - 141 (141/141)
4 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201335)
CAGE tag :
T08F05BC2037
HIX0208192
HIT000617049 (
ENST00000517655
)
(Conserved hypothetical protein.)
genome : 96,216,684 - 96,444,894 (228,211)
query : 1 - 562 (562/562)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, nucl 3.5, cyto_nucl 3.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208921
HIT000726556 (
NR_046232
)
(Conserved hypothetical protein.)
genome : 96,219,235 - 96,228,602 (9,368)
query : 1 - 519 (519/522)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto_mito 10.5, extr 10, cyto 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208921)
HIX0208921
HIT000622454 (
ENST00000523171
)
(Conserved hypothetical protein.)
genome : 96,219,235 - 96,228,602 (9,368)
query : 1 - 519 (519/519)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto_mito 10.5, extr 10, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208921)
HIX0007661
HIT000094659
(
BC036855
)
(Protein C8orf37;)
genome : 96,257,192 - 96,281,416 (24,225)
query : 12 - 2,523 (2,512/2,593)
7 exons
identity = 0.998
3'(1.000;0.997;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.996
InterPro :
IPR029239 : C8orf37 protein
GO :
0007601 : Biological Process : visual perception
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 6.5, cyto_nucl 6, nucl 4.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007661)
HIX0007661
HIT000435797
(
BC150301
)
(C8orf37 protein family protein.)
genome : 96,257,147 - 96,281,429 (24,283)
query : 1 - 3,334 (3,334/3,349)
6 exons
identity = 0.991
3'(0.990;1.000;1.000;1.000;0.989;0.994)5'
coverage = 1.000
InterPro :
IPR029239 : C8orf37 protein
GO :
0007601 : Biological Process : visual perception
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 11, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007661)
HIX0007661
HIT000215517 (
NM_177965
)
(Protein C8orf37;)
genome : 96,257,141 - 96,281,462 (24,322)
query : 1 - 3,373 (3,373/3,378)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 11, nucl 7.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007661)
HIX0007661
HIT000112763 (
ENST00000286688
)
(Protein C8orf37;)
genome : 96,257,147 - 96,281,429 (24,283)
query : 1 - 3,334 (3,334/3,334)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 11, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007661)
HIX0007661
HIT000011776
(
AK055162
)
Representative transcript
(Protein C8orf37;)
genome : 96,258,235 - 96,281,437 (23,203)
query : 1 - 2,254 (2,254/2,254)
6 exons
identity = 0.996
3'(0.995;1.000;0.985;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR029239 : C8orf37 protein
GO :
0007601 : Biological Process : visual perception
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 11, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007661)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK146358
Rattus
sp. (Rat) : BC079168
Gallus
sp. (Chicken) : CR388575
Tetraodon
sp. (Tetraodon) : CR730094
Equus
sp. (Horse) : ENSECAT00000022575
Macaca
sp. (Macaque) : ENSMMUT00000023170
Oryzias
sp. (Medaka) : ENSORLT00000019319
Pongo
sp. (Orangutan) : ENSPPYT00000021886
Pan
sp. (Chimpanzee) : ENSPTRT00000037815
Monodelphis
sp. (Opossum) : XM_001379619
Canis
sp. (Dog) : XM_849528
Bos
sp. (Cow) : XM_866332
HIX0007661
HIT000648014
(
GQ240139
)
(Protein C8orf37;)
genome : 96,258,235 - 96,281,437 (23,203)
query : 1 - 2,253 (2,253/2,253)
6 exons
identity = 0.996
3'(0.995;1.000;0.985;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR029239 : C8orf37 protein
GO :
0007601 : Biological Process : visual perception
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 11, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007661)
HIX0208192
HIT000648543
(
GU295153
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 529 (529/529)
5 exons
identity = 0.996
5'(1.000;0.994;1.000;0.994;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, extr 11, cyto_nucl 9.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000648544
(
GU295154
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 445 (445/445)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;0.994;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000648545
(
GU295155
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 374 (374/374)
4 exons
identity = 0.997
5'(1.000;1.000;0.994;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 6, nucl 5.5, cyto 5.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000648546
(
GU295156
)
Representative transcript
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 600 (600/600)
6 exons
identity = 0.997
5'(1.000;1.000;0.994;1.000;0.994;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000648547
(
GU295157
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 528 (528/528)
5 exons
identity = 0.996
5'(1.000;0.994;1.000;0.994;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 13, cyto 7.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000648548
(
GU295158
)
(Hypothetical short protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 219 (219/219)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000648549
(
GU295159
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 388 (388/388)
5 exons
identity = 0.995
5'(1.000;1.000;0.991;0.983;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, nucl 11.5, extr 11, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000648550
(
GU295160
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 575 (575/575)
6 exons
identity = 0.988
5'(1.000;0.994;0.959;0.912;0.994;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 10.5, cyto_nucl 7.5, nucl 3.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000648551
(
GU295161
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 335 (335/335)
3 exons
identity = 0.997
5'(1.000;0.994;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, extr 10, cyto_nucl 10, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000648552
(
GU295162
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 310 (310/310)
4 exons
identity = 0.997
5'(1.000;1.000;0.983;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 7.5, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000648553
(
GU295163
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 377 (377/377)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000660142 (
NR_038201
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 600 (600/600)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000660143 (
NR_038202
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 529 (529/529)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, extr 11, cyto_nucl 9.5, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000660144 (
NR_038203
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 445 (445/445)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 10, mito 8, cyto 5.5, extr 4,
E.R._mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000660145 (
NR_038204
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 374 (374/374)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 6, nucl 5.5, cyto 5.5, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000660146 (
NR_038205
)
(Hypothetical short protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 219 (219/219)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000660147 (
NR_038206
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 388 (388/388)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, nucl 11.5, extr 11, cyto 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000660148 (
NR_038207
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 335 (335/335)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, extr 10, cyto_nucl 10, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000660149 (
NR_038208
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 310 (310/310)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 7.5, cyto_nucl 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000660150 (
NR_038209
)
(Hypothetical protein.)
genome : 96,281,064 - 96,822,371 (541,308)
query : 1 - 377 (377/377)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000621214 (
ENST00000521905
)
(Hypothetical protein.)
genome : 96,281,064 - 96,665,938 (384,875)
query : 1 - 617 (617/617)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208907
HIT000622298_01 (
ENST00000523014
)
(Ribosomal protein L44e family protein.)
genome : 96,416,030 - 96,416,122 (93)
query : 1 - 93 (93/93)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 11, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208907)
HIX0208192
HIT000616836 (
ENST00000517437
)
(Conserved hypothetical protein.)
genome : 96,444,865 - 96,822,364 (377,500)
query : 1 - 456 (456/456)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, extr 11, cyto_nucl 9.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0208192
HIT000618722 (
ENST00000519366
)
(Conserved hypothetical protein.)
genome : 96,517,634 - 96,539,752 (22,119)
query : 1 - 2,125 (2,125/2,125)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, cyto 8.5, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208192)
HIX0125058
HIT000461324
(
DQ594793
)
Representative transcript
(Non-protein coding transcript.)
genome : 96,861,040 - 96,861,069 (30)
query : 1 - 30 (30/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.968
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0125058)
HIX0208273
HIT000659674 (
NR_036611
)
(Conserved hypothetical protein.)
genome : 96,959,212 - 96,960,576 (1,365)
query : 1 - 1,365 (1,365/1,365)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208273)
HIX0208273
HIT000623263 (
ENST00000523996
)
(Conserved hypothetical protein.)
genome : 96,960,009 - 96,960,461 (453)
query : 1 - 453 (453/453)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 14.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208273)
HIX0034565
HIT000095746
(
BC039482
)
Representative transcript
(Conserved hypothetical protein.)
genome : 96,998,340 - 97,005,331 (6,992)
query : 1 - 937 (937/1,000)
2 exons
identity = 0.998
3'(0.998;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 6.5, cyto_nucl 5, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034565)
HIX0034565
HIT000605685 (
ENST00000505564
)
(Conserved hypothetical protein.)
genome : 96,998,336 - 97,005,331 (6,996)
query : 1 - 941 (941/941)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 6.5, cyto_nucl 5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034565)
HIX0095400
HIT000389448
(
BC127829
)
Representative transcript
(Hypothetical short protein.)
genome : 97,072,446 - 97,072,680 (235)
query : 1 - 234 (234/248)
1 exon
identity = 0.979
3'(0.979)5'
coverage = 0.944
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0095400)
HIX0208460
HIT000613486 (
ENST00000513953
)
(Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain containing protein.)
genome : 97,080,957 - 97,081,909 (953)
query : 1 - 953 (953/953)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cysk 4, extr 3, nucl 2, mito 2, cysk_plas 2,
mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208460)
HIX0218318
HIT000714304 (
ENST00000602571
)
(Conserved hypothetical protein.)
genome : 97,152,800 - 97,153,172 (373)
query : 1 - 373 (373/373)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218318)
HIX0034300
HIT000248564
(
AJ537424
)
Representative transcript
(Growth/differentiation factor 6; GDF-6; Growth/differentiation factor 16; Precursor;)
genome : 97,154,559 - 97,173,020 (18,462)
query : 1 - 3,700 (3,700/3,716)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001111 : Transforming growth factor-beta, N-terminal
IPR001839 : Transforming growth factor-beta, C-terminal
IPR015615 : Transforming growth factor-beta-related
IPR017948 : Transforming growth factor beta, conserved site
IPR029034 : Cystine-knot cytokine
GO :
0008083 : Molecular Function : growth factor activity
0040007 : Biological Process : growth
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22.5, extr_plas 12, E.R. 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034300)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AJ537425
Rattus
sp. (Rat) : AJ537426
Oryzias
sp. (Medaka) : ENSORLT00000009856
Pongo
sp. (Orangutan) : ENSPPYT00000021887
Tetraodon
sp. (Tetraodon) : GSTENT00013233001
Takifugu
sp. (Fugu) : SINFRUT00000146671
Bos
sp. (Cow) : U13661
Macaca
sp. (Macaque) : XM_001090825
Monodelphis
sp. (Opossum) : XM_001379679
Equus
sp. (Horse) : XM_001915579
Danio
sp. (Zebrafish) : XM_689740
Pan
sp. (Chimpanzee) : XR_023332
HIX0034300
HIT000315416 (
NM_001001557
)
(Growth/differentiation factor 6; GDF-6; Growth/differentiation factor 16; Precursor;)
genome : 97,154,559 - 97,173,020 (18,462)
query : 1 - 3,700 (3,700/3,716)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22.5, extr_plas 12, E.R. 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034300)
HIX0034300
HIT000112803 (
ENST00000287020
)
(Growth/differentiation factor 6; GDF-6; Growth/differentiation factor 16; Precursor;)
genome : 97,154,562 - 97,173,020 (18,459)
query : 1 - 3,697 (3,697/3,697)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22.5, extr_plas 12, E.R. 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034300)
HIX0034300
HIT000097544
(
BC043222
)
(Growth/differentiation factor 6; GDF-6; Growth/differentiation factor 16; Precursor;)
genome : 97,154,723 - 97,157,398 (2,676)
query : 1 - 2,690 (2,690/2,707)
1 exon
identity = 0.993
3'(0.993)5'
coverage = 0.999
InterPro :
IPR001839 : Transforming growth factor-beta, C-terminal
IPR015615 : Transforming growth factor-beta-related
IPR017948 : Transforming growth factor beta, conserved site
IPR029034 : Cystine-knot cytokine
GO :
0008083 : Molecular Function : growth factor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 14.5, extr 8, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034300)
HIX0034300
HIT000389563
(
BC127947
)
(Growth/differentiation factor 6; GDF-6; Growth/differentiation factor 16; Precursor;)
genome : 97,156,753 - 97,172,947 (16,195)
query : 1 - 973 (973/973)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001111 : Transforming growth factor-beta, N-terminal
IPR015615 : Transforming growth factor-beta-related
GO :
0008083 : Molecular Function : growth factor activity
0040007 : Biological Process : growth
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034300)
HIX0034300
HIT000389564
(
BC127948
)
(Growth/differentiation factor 6; GDF-6; Growth/differentiation factor 16; Precursor;)
genome : 97,156,753 - 97,172,944 (16,192)
query : 1 - 1,179 (1,179/1,179)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001111 : Transforming growth factor-beta, N-terminal
IPR015615 : Transforming growth factor-beta-related
GO :
0008083 : Molecular Function : growth factor activity
0040007 : Biological Process : growth
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034300)
HIX0007663
HIT000112804 (
ENST00000287022
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,238,148 - 97,247,862 (9,715)
query : 1 - 5,575 (5,575/5,575)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 10.5, mito 9, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000202900 (
NM_006294
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,238,904 - 97,247,862 (8,959)
query : 1 - 4,819 (4,819/4,839)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.10.2.2
KEGG pathway :
00190 : Oxidative phosphorylation (12)
00910 : Nitrogen metabolism (50)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 10.5, mito 9, cyto 7.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000656738 (
NM_001199975
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,238,904 - 97,247,862 (8,959)
query : 1 - 4,933 (4,933/4,953)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.10.2.2
KEGG pathway :
00190 : Oxidative phosphorylation (12)
00910 : Nitrogen metabolism (50)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 12, plas 1, extr 1, mito 1, pero 1,
extr_plas 1, mito_pero 1
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000723438 (
NM_001254752
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,238,904 - 97,247,862 (8,959)
query : 1 - 4,956 (4,956/4,976)
5 exons
identity = 0.999
3'(1.000;0.972;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.10.2.2
KEGG pathway :
00190 : Oxidative phosphorylation (12)
00910 : Nitrogen metabolism (50)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13, mito 7, nucl 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000726375 (
NR_045639
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,238,904 - 97,247,862 (8,959)
query : 1 - 5,109 (5,109/5,129)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13.5, mito 7, nucl 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000425951
(
AK307085
)
Representative transcript
(Cytochrome b-c1 complex subunit 7 isoform 2.)
genome : 97,242,705 - 97,247,771 (5,067)
query : 1 - 1,041 (1,041/1,041)
5 exons
identity = 0.998
3'(1.000;0.994;0.986;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.10.2.2
KEGG pathway :
00190 : Oxidative phosphorylation (12)
00910 : Nitrogen metabolism (50)
01100 : Metabolic pathways (1346)
InterPro :
IPR003197 : Cytochrome b-c1 complex subunit 7
GO :
0005750 : Cellular Component : mitochondrial respiratory chain complex III
0006122 : Biological Process : mitochondrial electron transport, ubiquinol to cytochrome c
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 12, plas 1, extr 1, mito 1, pero 1,
extr_plas 1, mito_pero 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169874
Mus
sp. (Mouse) : AK008945
Danio
sp. (Zebrafish) : BC095035
Bos
sp. (Cow) : BC103057
Gallus
sp. (Chicken) : BX934091
Tetraodon
sp. (Tetraodon) : CR705275
Pongo
sp. (Orangutan) : CR858458
Oryzias
sp. (Medaka) : ENSORLT00000015910
Takifugu
sp. (Fugu) : SINFRUT00000161116
Rattus
sp. (Rat) : XM_001057294
Monodelphis
sp. (Opossum) : XM_001379688
Equus
sp. (Horse) : XM_001490414
Pan
sp. (Chimpanzee) : XM_519866
Canis
sp. (Dog) : XM_535132
HIX0007663
HIT000616998 (
ENST00000517603
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,242,705 - 97,247,771 (5,067)
query : 1 - 1,041 (1,041/1,041)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 12, plas 1, extr 1, mito 1, pero 1,
extr_plas 1, mito_pero 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000032304
(
BC005230
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,242,734 - 97,247,811 (5,078)
query : 1 - 938 (938/965)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003197 : Cytochrome b-c1 complex subunit 7
GO :
0005750 : Cellular Component : mitochondrial respiratory chain complex III
0006122 : Biological Process : mitochondrial electron transport, ubiquinol to cytochrome c
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 10.5, mito 9, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000489631
(
AK295007
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,242,943 - 97,247,774 (4,832)
query : 1 - 982 (982/982)
5 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003197 : Cytochrome b-c1 complex subunit 7
GO :
0005750 : Cellular Component : mitochondrial respiratory chain complex III
0006122 : Biological Process : mitochondrial electron transport, ubiquinol to cytochrome c
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13.5, mito 7, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000620358 (
ENST00000521036
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,242,943 - 97,247,774 (4,832)
query : 1 - 982 (982/982)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13.5, mito 7, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000194833
(
M22348
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,243,133 - 97,247,787 (4,655)
query : 4 - 518 (515/518)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.994
InterPro :
IPR003197 : Cytochrome b-c1 complex subunit 7
GO :
0005750 : Cellular Component : mitochondrial respiratory chain complex III
0006122 : Biological Process : mitochondrial electron transport, ubiquinol to cytochrome c
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 10.5, mito 9, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000321380
(
X13585
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,243,133 - 97,247,787 (4,655)
query : 4 - 518 (515/518)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.994
InterPro :
IPR003197 : Cytochrome b-c1 complex subunit 7
GO :
0005750 : Cellular Component : mitochondrial respiratory chain complex III
0006122 : Biological Process : mitochondrial electron transport, ubiquinol to cytochrome c
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 10.5, mito 9, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000096519
(
BC041005
)
(Cytochrome b-c1 complex subunit 7 isoform 2.)
genome : 97,243,164 - 97,247,772 (4,609)
query : 6 - 3,970 (3,965/3,986)
2 exons
identity = 0.997
3'(1.000;0.997)5'
coverage = 0.998
EC number :
EC 1.10.2.2
KEGG pathway :
00190 : Oxidative phosphorylation (12)
00910 : Nitrogen metabolism (50)
01100 : Metabolic pathways (1346)
InterPro :
IPR003197 : Cytochrome b-c1 complex subunit 7
GO :
0005750 : Cellular Component : mitochondrial respiratory chain complex III
0006122 : Biological Process : mitochondrial electron transport, ubiquinol to cytochrome c
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13, mito 7, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000618246 (
ENST00000518876
)
(Cytochrome b-c1 complex subunit 7 isoform 2.)
genome : 97,243,164 - 97,247,772 (4,609)
query : 1 - 3,968 (3,968/3,968)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.10.2.2
KEGG pathway :
00190 : Oxidative phosphorylation (12)
00910 : Nitrogen metabolism (50)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13, mito 7, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000616920 (
ENST00000517523
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,243,167 - 97,245,447 (2,281)
query : 1 - 515 (515/515)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 21, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000617786 (
ENST00000518406
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,243,170 - 97,247,767 (4,598)
query : 1 - 595 (595/595)
5 exons
identity = 0.993
3'(1.000;0.972;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13, mito 7, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000195079
(
M26700
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,243,173 - 97,247,810 (4,638)
query : 1 - 498 (498/498)
4 exons
identity = 0.996
3'(0.995;1.000;1.000;0.986)5'
coverage = 1.000
InterPro :
IPR003197 : Cytochrome b-c1 complex subunit 7
GO :
0005750 : Cellular Component : mitochondrial respiratory chain complex III
0006122 : Biological Process : mitochondrial electron transport, ubiquinol to cytochrome c
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 7, cyto 7, cyto_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000430622
(
AK311756
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,243,283 - 97,247,787 (4,505)
query : 1 - 365 (365/365)
4 exons
identity = 0.997
3'(1.000;0.994;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003197 : Cytochrome b-c1 complex subunit 7
GO :
0005750 : Cellular Component : mitochondrial respiratory chain complex III
0006122 : Biological Process : mitochondrial electron transport, ubiquinol to cytochrome c
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 10.5, mito 9, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000269045
(
CR542176
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,243,283 - 97,245,456 (2,174)
query : 19 - 336 (318/336)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.946
InterPro :
IPR003197 : Cytochrome b-c1 complex subunit 7
GO :
0005750 : Cellular Component : mitochondrial respiratory chain complex III
0006122 : Biological Process : mitochondrial electron transport, ubiquinol to cytochrome c
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 10.5, mito 9, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000269065
(
CR542196
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,243,286 - 97,245,456 (2,171)
query : 19 - 333 (315/333)
3 exons
identity = 0.997
3'(1.000;0.994;1.000)5'
coverage = 0.946
InterPro :
IPR003197 : Cytochrome b-c1 complex subunit 7
GO :
0005750 : Cellular Component : mitochondrial respiratory chain complex III
0006122 : Biological Process : mitochondrial electron transport, ubiquinol to cytochrome c
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 10.5, mito 9, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000621256 (
ENST00000521948
)
(Cytochrome b-c1 complex subunit 7 isoform 2.)
genome : 97,243,291 - 97,246,143 (2,853)
query : 1 - 997 (997/997)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.10.2.2
KEGG pathway :
00190 : Oxidative phosphorylation (12)
00910 : Nitrogen metabolism (50)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 12, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000623187 (
ENST00000523920
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,243,323 - 97,247,774 (4,452)
query : 1 - 695 (695/695)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13.5, mito 7, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0007663
HIT000618679 (
ENST00000519322
)
(Cytochrome b-c1 complex subunit 7; Complex III subunit 7; Complex III subunit VII; QP-C; Ubiquinol-cytochrome c reductase complex 14 kDa protein;)
genome : 97,243,525 - 97,247,773 (4,249)
query : 1 - 750 (750/750)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, mito 10, cyto_nucl 10, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007663)
HIX0208726
HIT000619909 (
ENST00000520575
)
(Hypothetical short protein.)
genome : 97,247,655 - 97,250,262 (2,608)
query : 1 - 382 (382/382)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208726)
HIX0007664
HIT000427868
(
AK309002
)
(mTERF domain-containing protein 1, mitochondrial; Mitochondrial transcription termination factor 3; mTERF3; Precursor;)
genome : 97,251,626 - 97,273,838 (22,213)
query : 1 - 1,529 (1,529/1,529)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003690 : Mitochodrial transcription termination factor
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007664)
HIX0007664
HIT000623091 (
ENST00000523821
)
(Mitochodrial transcription termination factor family protein.)
genome : 97,251,626 - 97,273,838 (22,213)
query : 1 - 1,529 (1,529/1,529)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007664)
HIX0007664
HIT000036066
(
BC012995
)
Representative transcript
(mTERF domain-containing protein 1, mitochondrial; Mitochondrial transcription termination factor 3; mTERF3; Precursor;)
genome : 97,251,645 - 97,273,796 (22,152)
query : 1 - 1,406 (1,406/1,424)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
InterPro :
IPR003690 : Mitochodrial transcription termination factor
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007664)
HIX0007664
HIT000205730 (
NM_015942
)
(Mitochodrial transcription termination factor family protein.)
genome : 97,251,645 - 97,273,796 (22,152)
query : 1 - 1,406 (1,406/1,424)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007664)
HIX0007664
HIT000070933
(
AF132946
)
(Mitochodrial transcription termination factor family protein.)
genome : 97,251,651 - 97,270,764 (19,114)
query : 1 - 1,167 (1,167/1,167)
7 exons
identity = 0.993
3'(1.000;1.000;0.986;0.973;1.000;1.000;0.983)5'
coverage = 1.000
InterPro :
IPR003690 : Mitochodrial transcription termination factor
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 17.1667, cyto_plas 13, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007664)
HIX0007664
HIT000004275
(
AK001801
)
(mTERF domain-containing protein 1, mitochondrial; Mitochondrial transcription termination factor 3; mTERF3; Precursor;)
genome : 97,251,652 - 97,269,503 (17,852)
query : 1 - 1,148 (1,148/1,148)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 13.3333, cyto_plas 11.6667,
nucl 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007664)
HIX0007664
HIT000622108 (
ENST00000522822
)
(Mitochodrial transcription termination factor family protein.)
genome : 97,251,652 - 97,269,503 (17,852)
query : 1 - 1,148 (1,148/1,148)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 13.5, nucl 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007664)
HIX0007664
HIT000623604 (
ENST00000524341
)
(Mitochodrial transcription termination factor family protein.)
genome : 97,251,657 - 97,269,298 (17,642)
query : 1 - 776 (776/776)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25.5, cyto_nucl 15, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007664)
HIX0007664
HIT000112805 (
ENST00000287025
)
(Mitochodrial transcription termination factor family protein.)
genome : 97,251,663 - 97,273,817 (22,155)
query : 1 - 1,409 (1,409/1,409)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007664)
HIX0007664
HIT000617113 (
ENST00000517720
)
(Conserved hypothetical protein.)
genome : 97,270,716 - 97,273,816 (3,101)
query : 1 - 412 (412/412)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, nucl 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007664)
HIX0007665
HIT000616711 (
ENST00000517309
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,273,943 - 97,349,223 (75,281)
query : 1 - 5,177 (5,177/5,177)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000425833
(
AK293036
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,274,130 - 97,346,329 (72,200)
query : 1 - 2,096 (2,096/2,096)
13 exons
identity = 0.999
5'(1.000;0.989;1.000;0.992;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR004277 : Phosphatidyl serine synthase
GO :
0006659 : Biological Process : phosphatidylserine biosynthetic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000030843
(
BC002376
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,274,141 - 97,346,775 (72,635)
query : 1 - 2,361 (2,361/2,379)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR004277 : Phosphatidyl serine synthase
GO :
0006659 : Biological Process : phosphatidylserine biosynthetic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000130326 (
ENST00000337004
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,274,141 - 97,346,780 (72,640)
query : 1 - 2,366 (2,366/2,366)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000553884 (
ENST00000455950
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,274,141 - 97,346,774 (72,634)
query : 1 - 2,360 (2,360/2,360)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000031770
(
BC004192
)
Representative transcript
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,274,164 - 97,346,775 (72,612)
query : 1 - 2,508 (2,508/2,528)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR004277 : Phosphatidyl serine synthase
GO :
0006659 : Biological Process : phosphatidylserine biosynthetic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ719519
Mus
sp. (Mouse) : AK085857
Danio
sp. (Zebrafish) : BC044533
Bos
sp. (Cow) : BC112833
Danio
sp. (Zebrafish) : BC154558
Monodelphis
sp. (Opossum) : ENSMODT00000008772
Oryzias
sp. (Medaka) : ENSORLT00000010069
Oryzias
sp. (Medaka) : ENSORLT00000015895
Pongo
sp. (Orangutan) : ENSPPYT00000021890
Rattus
sp. (Rat) : ENSRNOT00000006317
Tetraodon
sp. (Tetraodon) : GSTENT00017416001
Tetraodon
sp. (Tetraodon) : GSTENT00034096001
Takifugu
sp. (Fugu) : SINFRUT00000145238
Takifugu
sp. (Fugu) : SINFRUT00000161118
Macaca
sp. (Macaque) : XM_001091545
Equus
sp. (Horse) : XM_001490457
Pan
sp. (Chimpanzee) : XM_519868
Canis
sp. (Dog) : XM_849686
HIX0007665
HIT000031911
(
BC004390
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,274,164 - 97,346,775 (72,612)
query : 1 - 2,508 (2,508/2,526)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR004277 : Phosphatidyl serine synthase
GO :
0006659 : Biological Process : phosphatidylserine biosynthetic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000042164
(
D14694
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,274,167 - 97,346,774 (72,608)
query : 1 - 2,504 (2,504/2,504)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR004277 : Phosphatidyl serine synthase
GO :
0006659 : Biological Process : phosphatidylserine biosynthetic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000205057 (
NM_014754
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,274,167 - 97,346,774 (72,608)
query : 1 - 2,504 (2,504/2,504)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000616954 (
ENST00000517557
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,274,195 - 97,299,616 (25,422)
query : 1 - 757 (757/757)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R. 3, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000618148 (
ENST00000518776
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,295,825 - 97,316,385 (20,561)
query : 1 - 766 (766/766)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000086377
(
BC004502
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,307,325 - 97,346,778 (39,454)
query : 17 - 1,982 (1,966/2,018)
9 exons
identity = 0.998
5'(0.975;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.992
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR004277 : Phosphatidyl serine synthase
GO :
0006659 : Biological Process : phosphatidylserine biosynthetic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000488137
(
AK293513
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,307,420 - 97,346,210 (38,791)
query : 1 - 1,112 (1,112/1,112)
9 exons
identity = 0.988
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.974;0.967)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
InterPro :
IPR004277 : Phosphatidyl serine synthase
GO :
0006659 : Biological Process : phosphatidylserine biosynthetic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000621379 (
ENST00000522072
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,307,420 - 97,346,210 (38,791)
query : 1 - 1,112 (1,112/1,112)
9 exons
identity = 0.988
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.974;0.967)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000617369 (
ENST00000517982
)
(Phosphatidylserine synthase 1; PSS-1; PtdSer synthase 1; EC=2.7.8.29; Serine-exchange enzyme I;)
genome : 97,342,545 - 97,346,120 (3,576)
query : 1 - 1,215 (1,215/1,215)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0007665
HIT000046316
(
AK126443
)
(Conserved hypothetical protein.)
genome : 97,347,155 - 97,349,223 (2,069)
query : 1 - 2,067 (2,067/2,067)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17, extr 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007665)
HIX0208266
HIT000623131 (
ENST00000523862
)
(Conserved hypothetical protein.)
genome : 97,384,093 - 97,398,876 (14,784)
query : 1 - 711 (711/711)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208266)
HIX0208266
HIT000622055 (
ENST00000522767
)
(Conserved hypothetical protein.)
genome : 97,384,320 - 97,399,666 (15,347)
query : 1 - 552 (552/552)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto_nucl 4.16667, extr 4, nucl 3.5,
cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208266)
HIX0007666
HIT000116080 (
ENST00000302190
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,505,579 - 97,624,000 (118,422)
query : 1 - 3,751 (3,751/3,751)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25.5, extr_plas 14.5, plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000199867 (
NM_002998
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,505,882 - 97,624,037 (118,156)
query : 1 - 3,485 (3,485/3,485)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25.5, extr_plas 14.5, plas 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000092059
(
BC030133
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,505,896 - 97,623,998 (118,103)
query : 1 - 3,432 (3,432/3,491)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR001050 : Syndecan
IPR003585 : Neurexin/syndecan/glycophorin C
IPR027789 : Syndecan/Neurexin domain
GO :
0008092 : Molecular Function : cytoskeletal protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25.5, extr_plas 14.5, plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000191279
(
J04621
)
(Syndecan family protein.)
genome : 97,505,913 - 97,623,997 (118,085)
query : 3 - 3,414 (3,412/3,414)
5 exons
identity = 0.996
5'(0.998)3'
coverage = 0.999
InterPro :
IPR001050 : Syndecan
IPR003585 : Neurexin/syndecan/glycophorin C
IPR027789 : Syndecan/Neurexin domain
GO :
0008092 : Molecular Function : cytoskeletal protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24.5, extr_plas 14, plas 2.5, mito 2, E.R. 2,
E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000494691
(
AK300067
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,506,041 - 97,622,402 (116,362)
query : 4 - 1,588 (1,585/1,588)
4 exons
identity = 0.997
5'(0.990)3'
coverage = 0.998
InterPro :
IPR001050 : Syndecan
IPR003585 : Neurexin/syndecan/glycophorin C
IPR027789 : Syndecan/Neurexin domain
GO :
0008092 : Molecular Function : cytoskeletal protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28.5, extr_plas 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000008762
(
AK025488
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,506,041 - 97,622,868 (116,828)
query : 1 - 2,157 (2,157/2,172)
5 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
InterPro :
IPR001050 : Syndecan
IPR003585 : Neurexin/syndecan/glycophorin C
IPR027789 : Syndecan/Neurexin domain
GO :
0008092 : Molecular Function : cytoskeletal protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25.5, extr_plas 14.5, plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000022693
(
AK097839
)
Representative transcript
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,506,041 - 97,622,867 (116,827)
query : 1 - 2,116 (2,116/2,116)
6 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001050 : Syndecan
IPR003585 : Neurexin/syndecan/glycophorin C
IPR027789 : Syndecan/Neurexin domain
GO :
0008092 : Molecular Function : cytoskeletal protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25.5, extr_plas 14.5, plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB170299
Gallus
sp. (Chicken) : AF508228
Rattus
sp. (Rat) : BC070890
Bos
sp. (Cow) : ENSBTAT00000019090
Monodelphis
sp. (Opossum) : ENSMODT00000008695
Oryzias
sp. (Medaka) : ENSORLT00000012792
Pongo
sp. (Orangutan) : ENSPPYT00000021892
Takifugu
sp. (Fugu) : SINFRUT00000171846
Mus
sp. (Mouse) : U00674
Equus
sp. (Horse) : XM_001915199
Canis
sp. (Dog) : XM_535133
Pan
sp. (Chimpanzee) : XR_023383
HIX0007666
HIT000049402
(
AK130131
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,506,041 - 97,622,860 (116,820)
query : 1 - 2,149 (2,149/2,149)
5 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
InterPro :
IPR001050 : Syndecan
IPR003585 : Neurexin/syndecan/glycophorin C
IPR027789 : Syndecan/Neurexin domain
GO :
0008092 : Molecular Function : cytoskeletal protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25.5, extr_plas 14.5, plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000617766 (
ENST00000518385
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,506,041 - 97,622,402 (116,362)
query : 1 - 1,583 (1,583/1,583)
4 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, E.R. 4, plas 1, nucl 1, cyto 1, cyto_nucl 1,
golg 1, cyto_plas 1, cyto_golg 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000493267
(
AK298643
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,506,041 - 97,622,328 (116,288)
query : 1 - 1,476 (1,476/1,476)
6 exons
identity = 0.991
5'(1.000;0.870)3'
coverage = 1.000
InterPro :
IPR001050 : Syndecan
IPR003585 : Neurexin/syndecan/glycophorin C
IPR027789 : Syndecan/Neurexin domain
GO :
0008092 : Molecular Function : cytoskeletal protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 9.5, mito 8, plas 6.5, cyto_nucl 6.5,
extr_plas 4.5, E.R._mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000618937 (
ENST00000519587
)
(Hypothetical protein.)
genome : 97,506,041 - 97,551,044 (45,004)
query : 1 - 557 (557/557)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, mito_nucl 16.5, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000619574 (
ENST00000520233
)
(Hypothetical protein.)
genome : 97,506,041 - 97,549,571 (43,531)
query : 1 - 563 (563/563)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, mito_nucl 15.5, nucl 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000081565
(
AK074530
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,506,096 - 97,622,863 (116,768)
query : 1 - 2,097 (2,097/2,097)
5 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
InterPro :
IPR001050 : Syndecan
IPR003585 : Neurexin/syndecan/glycophorin C
IPR027789 : Syndecan/Neurexin domain
GO :
0008092 : Molecular Function : cytoskeletal protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25.5, extr_plas 14.5, plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000053377
(
BC049836
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,506,165 - 97,622,742 (116,578)
query : 2 - 1,908 (1,907/1,922)
5 exons
identity = 0.999
5'(1.000)3'
coverage = 0.999
InterPro :
IPR001050 : Syndecan
IPR003585 : Neurexin/syndecan/glycophorin C
IPR027789 : Syndecan/Neurexin domain
GO :
0008092 : Molecular Function : cytoskeletal protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24.5, extr_plas 14, plas 2.5, mito 2, E.R. 2,
E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000622196 (
ENST00000522911
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,506,236 - 97,621,871 (115,636)
query : 1 - 677 (677/677)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 8.5, cyto_nucl 6.5, pero 6, plas 5.5,
extr_plas 4, nucl 3.5, mito 3, E.R. 2, golg 2, E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000493563
(
AK298939
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,592,577 - 97,622,343 (29,767)
query : 1 - 1,333 (1,333/1,333)
5 exons
identity = 0.998
5'(1.000)3'
coverage = 1.000
InterPro :
IPR001050 : Syndecan
IPR003585 : Neurexin/syndecan/glycophorin C
IPR027789 : Syndecan/Neurexin domain
GO :
0008092 : Molecular Function : cytoskeletal protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 8.5, plas 5, pero 5, nucl 4.5,
mito 2, E.R. 2, E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000619261 (
ENST00000519914
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,592,577 - 97,622,328 (29,752)
query : 1 - 1,318 (1,318/1,318)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 8.5, cyto_nucl 6.5, pero 6, plas 5.5,
extr_plas 4, nucl 3.5, mito 3, E.R. 2, golg 2, E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000620905 (
ENST00000521590
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,597,173 - 97,621,668 (24,496)
query : 1 - 507 (507/507)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, mito 6, plas 5, mito_pero 5, pero 4,
mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0007666
HIT000623145 (
ENST00000523877
)
(Syndecan-2; SYND2; Fibroglycan; Heparan sulfate proteoglycan core protein; HSPG; AltName: CD_antigen=CD362; Precursor;)
genome : 97,598,615 - 97,621,693 (23,079)
query : 1 - 621 (621/621)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, mito 6, plas 5, mito_pero 5, pero 4,
mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007666)
HIX0201335
pHIT000107108 ( pHIT000107108 )
Representative transcript
(Hypothetical short protein.)
genome : 96,187,382 - 96,243,968 (56,587)
query : 1 - 141 (141/141)
4 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201335)
CAGE tag :
T08F05BC2037
HIX0018591
eHIT000023364 ( ESTsASS_8_711 )
(Non-protein coding transcript.)
genome : 96,037,219 - 96,070,513 (33,295)
query : 1 - 1,368 (1,368/1,368)
9 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018591)
ESTs used for assembly :
BP275471,AL522944,DC365987,AW023178
BU956173,DA897677,BX282282,H88416
AW582520,CN344829,BF030925
AC087752.12
96000001-96012362 F -
NCBI
AC068189.11
96012363-96108870 F -
NCBI
AC018801.4
96108871-96203933 F -
NCBI
AP003466.2
96203934-96275809 O +
NCBI
AC024995.8
96275810-96447682 F -
NCBI
AC083836.6
96447683-96547130 F -
NCBI
AC108924.5
96547131-96666860 F +
NCBI
AC116154.2
96666861-96828246 F +
NCBI
AC068102.5
96828247-96936264 F -
NCBI
AC012339.8
96936265-97051943 F +
NCBI
AC007992.12
97051944-97143470 F -
NCBI
AP003465.2
97143471-97357862 O +
NCBI
AP003548.2
97357863-97528406 O +
NCBI
AP003477.2
97528407-97600000 O +
NCBI