bases per tick :
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kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0207442
eHIT000020552 ( ESTsASS_6_1202 )
Representative transcript
(Non-protein coding transcript.)
genome : 92,037,350 - 92,061,461 (24,112)
query : 1 - 569 (569/569)
2 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207442)
ESTs used for assembly :
DA873797
HIX0165702
HIT000532427 (
ENST00000434493
)
(Hypothetical short protein.)
genome : 92,100,031 - 92,102,718 (2,688)
query : 1 - 442 (442/442)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165702)
HIX0216933
HIT000689427 (
ENST00000577473
)
(Non-protein coding transcript.)
genome : 92,231,378 - 92,231,455 (78)
query : 1 - 78 (78/78)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216933)
HIX0216933
HIT000725849 (
NR_039786
)
(Non-protein coding transcript.)
genome : 92,231,378 - 92,231,455 (78)
query : 1 - 78 (78/78)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216933)
HIX0033214
HIT000095042
(
BC037927
)
Representative transcript
(Conserved hypothetical protein.)
genome : 92,338,755 - 92,400,146 (61,392)
query : 1 - 1,610 (1,610/1,625)
4 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 12.5, cyto 9, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033214)
HIX0033214
HIT000535702 (
ENST00000437768
)
(Conserved hypothetical protein.)
genome : 92,339,633 - 92,400,146 (60,514)
query : 1 - 733 (733/733)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12, cyto 9.5, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033214)
HIX0217115
HIT000686823 (
ENST00000574491
)
(Hypothetical protein.)
genome : 92,436,528 - 92,436,788 (261)
query : 1 - 261 (261/261)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 7.5, nucl 7, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217115)
HIX0165191
HIT000504348 (
ENST00000403051
)
(NADH-ubiquinone oxidoreductase chain 4L/K family protein.)
genome : 92,436,877 - 92,437,042 (166)
query : 1 - 166 (166/166)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165191)
HIX0165113
HIT000503820 (
ENST00000401674
)
(Hypothetical protein.)
genome : 92,437,000 - 92,437,223 (224)
query : 1 - 224 (224/224)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, extr 5, cyto_nucl 2.5, extr_plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165113)
HIX0165370
HIT000505547 (
ENST00000406314
)
(Small GTPase superfamily protein.)
genome : 92,525,561 - 92,526,146 (586)
query : 1 - 586 (586/586)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 6, nucl 3, cyto_pero 3, cyto_plas 3,
cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165370)
HIX0165253
HIT000504770 (
ENST00000404228
)
(Conserved hypothetical protein.)
genome : 92,723,560 - 92,724,452 (893)
query : 1 - 893 (893/893)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 12, extr 6, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165253)
HIX0033191
HIT000093275
(
BC033941
)
Representative transcript
(Conserved hypothetical protein.)
genome : 93,097,559 - 93,098,545 (987)
query : 6 - 992 (987/1,012)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.995
SOSUI :
MEMBRANE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033191)
HIX0217101
HIT000677380 (
ENST00000564251
)
(Conserved hypothetical protein.)
genome : 93,097,559 - 93,098,545 (987)
query : 1 - 987 (987/987)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 9, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217101)
HIX0207442
eHIT000020552 ( ESTsASS_6_1202 )
Representative transcript
(Non-protein coding transcript.)
genome : 92,037,350 - 92,061,461 (24,112)
query : 1 - 569 (569/569)
2 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207442)
ESTs used for assembly :
DA873797
AL445208.11
91500001-91553114 F +
NCBI
AL365335.11
91553115-91711887 F +
NCBI
AL663112.5
91711888-91742069 F +
NCBI
AL607079.7
91742070-91884638 F +
NCBI
AL449343.16
91884639-91986125 F +
NCBI
AL080284.20
91986126-92146775 F -
NCBI
AL512600.5
92146776-92287847 F +
NCBI
AL355351.18
92287848-92329794 F +
NCBI
AL132766.13
92329795-92474678 F -
NCBI
AL590635.7
92474679-92568611 F +
NCBI
AL592428.6
92568612-92655241 F +
NCBI
AL603903.6
92655242-92690974 F +
NCBI
AL590814.5
92690975-92851514 F -
NCBI
AL603751.4
92851515-92882987 F +
NCBI
AL596179.3
92882988-93050146 F +
NCBI
AL133457.8
93050147-93100000 F -
NCBI