bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0005993
HIT000207180 (
NM_018368
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,641 - 70,507,049 (121,409)
query : 1 - 2,308 (2,308/2,308)
16 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000069777
(
AF113224
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,694 - 70,506,769 (121,076)
query : 1 - 1,975 (1,975/2,012)
16 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000002259
(
AF208863
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,698 - 70,500,557 (114,860)
query : 1 - 2,099 (2,099/2,113)
15 exons
identity = 0.998
3'(0.989)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000351857 (
ENST00000370577
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,694 - 70,507,003 (121,310)
query : 1 - 2,209 (2,209/2,209)
16 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000351850 (
ENST00000370570
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,698 - 70,500,557 (114,860)
query : 1 - 2,099 (2,099/2,099)
15 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000331694
(
AY136817
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,698 - 70,500,214 (114,517)
query : 1 - 1,756 (1,756/1,756)
15 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000053081
(
BC047073
)
Representative transcript
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,750 - 70,506,888 (121,139)
query : 1 - 2,038 (2,038/2,076)
16 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169601
Gallus
sp. (Chicken) : AJ720979
Mus
sp. (Mouse) : AK032560
Rattus
sp. (Rat) : BC078723
Bos
sp. (Cow) : BC103324
Danio
sp. (Zebrafish) : ENSDART00000074131
Oryzias
sp. (Medaka) : ENSORLT00000012912
Pongo
sp. (Orangutan) : ENSPPYT00000019490
Tetraodon
sp. (Tetraodon) : GSTENT00030706001
Takifugu
sp. (Fugu) : SINFRUT00000129345
Pan
sp. (Chimpanzee) : XM_001136075
Monodelphis
sp. (Opossum) : XM_001372997
Equus
sp. (Horse) : XM_001503388
Canis
sp. (Dog) : XM_848140
HIX0005993
HIT000034897
(
BC010360
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,752 - 70,506,777 (121,026)
query : 5 - 1,696 (1,692/1,727)
14 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.996
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17, E.R. 11, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000577186 (
ENST00000472827
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,749 - 70,506,777 (121,029)
query : 1 - 1,861 (1,861/1,861)
16 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000004576
(
AK002102
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,751 - 70,506,798 (121,048)
query : 1 - 1,947 (1,947/1,947)
16 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000422866
(
AK290069
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,756 - 70,506,534 (120,779)
query : 1 - 2,073 (2,073/2,073)
16 exons
identity = 0.999
3'(1.000;0.996)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000384667
(
AK225537
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,791 - 70,506,783 (120,993)
query : 1 - 1,892 (1,892/1,892)
16 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000384317
(
AK225187
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,812 - 70,506,798 (120,987)
query : 1 - 1,886 (1,886/1,886)
16 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000328537
(
AB074281
)
(Conserved hypothetical protein.)
genome : 70,503,629 - 70,506,479 (2,851)
query : 2 - 2,852 (2,851/2,852)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11, cyto 10, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0216864
HIT000264135
(
BC070177
)
Representative transcript
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,463 - 70,601,093 (24,631)
query : 1 - 1,477 (1,477/1,506)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216864)
HIX0216864
HIT000427889
(
AK309023
)
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,577,308 - 70,590,100 (12,793)
query : 1 - 895 (895/895)
2 exons
identity = 0.999
5'(0.995;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, cyto_nucl 2, nucl 1.5, cyto 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216864)
HIX0216864
HIT000580841 (
ENST00000476656
)
(Conserved hypothetical protein.)
genome : 70,577,441 - 70,601,096 (23,656)
query : 1 - 1,499 (1,499/1,515)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216864)
HIX0216864
HIT000582717 (
ENST00000478620
)
(Hypothetical short protein.)
genome : 70,577,441 - 70,589,687 (12,247)
query : 1 - 349 (349/349)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, cyto_nucl 2, nucl 1.5, cyto 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216864)
HIX0217072
HIT000587619 (
ENST00000483745
)
(Collagen triple helix repeat containing protein.)
genome : 70,646,764 - 70,684,088 (37,325)
query : 1 - 550 (550/550)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 4, mito 4, cyto_mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217072)
HIX0216852
HIT000476800 (
ENST00000393344
)
(Collagen triple helix repeat containing protein.)
genome : 70,769,627 - 70,919,679 (150,053)
query : 1 - 5,023 (5,023/5,023)
38 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, nucl 6, mito 6, mito_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216852)
HIX0165274
HIT000504873 (
ENST00000404509
)
(Conserved hypothetical protein.)
genome : 70,808,282 - 70,808,568 (287)
query : 1 - 287 (287/287)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165274)
HIX0216852
HIT000553349 (
ENST00000455415
)
(Conserved hypothetical protein.)
genome : 70,831,772 - 70,841,095 (9,324)
query : 1 - 256 (256/256)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216852)
HIX0216852
HIT000217897
(
U09279
)
Representative transcript
(Collagen triple helix repeat containing protein.)
genome : 70,866,235 - 70,917,566 (51,332)
query : 1 - 1,808 (1,808/1,808)
19 exons
identity = 0.997
5'(1.000;0.981;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR008160 : Collagen triple helix repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, nucl 4, pero 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216852)
HIX0216789
HIT000022436
(
AK097582
)
Representative transcript
(Collagen triple helix repeat containing protein.)
genome : 70,926,227 - 70,956,006 (29,780)
query : 1 - 1,843 (1,843/1,843)
10 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR008160 : Collagen triple helix repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, cyto_nucl 12, nucl 10, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216789)
HIX0216789
HIT000589852 (
ENST00000486080
)
(Collagen triple helix repeat containing protein.)
genome : 70,926,227 - 70,956,006 (29,780)
query : 1 - 1,844 (1,844/1,844)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, cyto_nucl 12, nucl 10, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216789)
HIX0207544
HIT000621563 (
ENST00000522264
)
(Hypothetical short protein.)
genome : 70,932,461 - 70,951,859 (19,399)
query : 1 - 254 (254/254)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 5, nucl 4.5, cyto 4.5, mito 2.5,
lyso 2, E.R._mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207544)
HIX0216789
HIT000544975 (
ENST00000447041
)
(Conserved hypothetical protein.)
genome : 70,944,263 - 70,964,244 (19,982)
query : 8 - 690 (683/690)
12 exons
identity = 0.993
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.924)5'
coverage = 0.990
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, cyto 8.5, extr 7, cyto_nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216789)
HIX0216789
HIT000597111 (
ENST00000493682
)
(Collagen triple helix repeat containing protein.)
genome : 70,944,612 - 70,970,781 (26,170)
query : 1 - 1,117 (1,117/1,117)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto 6.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216789)
HIX0216789
HIT000314172 (
ENST00000360859
)
(Collagen triple helix repeat containing protein.)
genome : 70,951,121 - 70,968,345 (17,225)
query : 1 - 681 (681/699)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.974
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, mito 13, cyto_nucl 10, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216789)
HIX0216789
HIT000593450 (
ENST00000489861
)
(Collagen triple helix repeat containing protein.)
genome : 70,961,964 - 70,964,314 (2,351)
query : 1 - 236 (236/243)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.971
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 13.5, extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216789)
HIX0217035
HIT000462860
(
DQ596329
)
Representative transcript
(Non-protein coding transcript.)
genome : 70,972,959 - 70,972,988 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217035)
HIX0217067
HIT000575118 (
ENST00000470652
)
(Conserved hypothetical protein.)
genome : 70,983,715 - 70,984,881 (1,167)
query : 1 - 531 (531/531)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 11.5, mito 9, nucl 4.5,
E.R._mito 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217067)
HIX0216800
HIT000037114
(
BC015409
)
Representative transcript
(Laminin G domain containing protein.)
genome : 70,989,465 - 71,012,773 (23,309)
query : 1 - 1,372 (1,372/1,387)
11 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, E.R. 6, pero 4, E.R._mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216800)
HIX0216800
HIT000351776 (
ENST00000370496
)
(Laminin G domain containing protein.)
genome : 70,989,465 - 71,012,773 (23,309)
query : 1 - 1,372 (1,372/1,372)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, E.R. 6, pero 4, E.R._mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216800)
HIX0216800
HIT000321893
(
X54413
)
(Non-protein coding transcript.)
genome : 70,991,110 - 70,992,755 (1,646)
query : 1 - 130 (130/130)
2 exons
identity = 0.985
3'(0.966;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216800)
HIX0165557
HIT000516337 (
ENST00000418403
)
(Conserved hypothetical protein.)
genome : 71,104,590 - 71,109,120 (4,531)
query : 1 - 397 (397/397)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto_mito 5, cyto 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165557)
HIX0165806
HIT000546297 (
ENST00000448363
)
(Non-protein coding transcript.)
genome : 71,122,531 - 71,123,653 (1,123)
query : 1 - 349 (349/349)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165806)
HIX0005996
HIT000613700 (
ENST00000514185
)
(Conserved hypothetical protein.)
genome : 71,122,644 - 71,138,047 (15,404)
query : 1 - 529 (529/529)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000516748 (
ENST00000418814
)
(Protein FAM135A;)
genome : 71,123,011 - 71,270,877 (147,867)
query : 1 - 6,415 (6,415/6,415)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000208073 (
NM_020819
)
(Protein FAM135A isoform b.)
genome : 71,123,107 - 71,270,876 (147,770)
query : 1 - 5,593 (5,593/5,610)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000485743 (
NM_001105531
)
(Protein FAM135A;)
genome : 71,123,107 - 71,270,876 (147,770)
query : 1 - 5,730 (5,730/5,747)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 14.5, nucl 12.5, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000351759 (
ENST00000370479
)
(Protein FAM135A isoform b.)
genome : 71,123,107 - 71,270,873 (147,767)
query : 1 - 5,676 (5,676/5,676)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000605877 (
ENST00000505769
)
(Protein FAM135A isoform c.)
genome : 71,123,124 - 71,270,735 (147,612)
query : 1 - 4,806 (4,806/4,806)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 14.5, nucl 12.5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000614763 (
ENST00000515323
)
(Protein FAM135A isoform c.)
genome : 71,123,128 - 71,234,302 (111,175)
query : 1 - 1,926 (1,926/1,926)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14.5, nucl 10.5, mito 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000608751 (
ENST00000508844
)
(Conserved hypothetical protein.)
genome : 71,123,217 - 71,136,474 (13,258)
query : 1 - 595 (595/595)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 10, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000614723 (
ENST00000515280
)
(Protein FAM135A isoform a.)
genome : 71,123,218 - 71,138,122 (14,905)
query : 1 - 530 (530/546)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.971
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 8, cyto 3.5, cyto_pero 3.33333,
cyto_nucl 3.16667, golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000607102 (
ENST00000507085
)
(Conserved hypothetical protein.)
genome : 71,123,253 - 71,162,268 (39,016)
query : 1 - 641 (641/641)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000306294
(
CR749254
)
(Protein FAM135A isoform c.)
genome : 71,123,269 - 71,270,727 (147,459)
query : 1 - 5,282 (5,282/5,302)
21 exons
identity = 0.998
5'(1.000;1.000;1.000;0.989;1.000;0.994;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.999;
1.000;1.000;1.000;0.993;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR007751 : Domain of unknown function DUF676, lipase-like
IPR022122 : Protein FAM135
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000554996 (
ENST00000457062
)
(Protein FAM135A isoform b.)
genome : 71,123,269 - 71,270,727 (147,459)
query : 1 - 5,282 (5,282/5,282)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000314761 (
ENST00000361499
)
(Protein FAM135A isoform a.)
genome : 71,123,281 - 71,270,362 (147,082)
query : 1 - 5,042 (5,042/5,042)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 14.5, nucl 12.5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000390683
(
BC131782
)
(Protein FAM135A isoform c.)
genome : 71,123,281 - 71,270,362 (147,082)
query : 1 - 5,042 (5,042/5,042)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR007751 : Domain of unknown function DUF676, lipase-like
IPR022122 : Protein FAM135
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 14.5, nucl 12.5, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000562059 (
NM_001162529
)
(Protein FAM135A;)
genome : 71,136,142 - 71,270,876 (134,735)
query : 1 - 5,933 (5,933/5,950)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000001126
(
AB037832
)
Representative transcript
(Protein FAM135A;)
genome : 71,136,174 - 71,270,875 (134,702)
query : 1 - 5,900 (5,900/5,900)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC070446
Pongo
sp. (Orangutan) : CR859144
Danio
sp. (Zebrafish) : ENSDART00000083638
Equus
sp. (Horse) : ENSECAT00000012700
Monodelphis
sp. (Opossum) : ENSMODT00000023578
Oryzias
sp. (Medaka) : ENSORLT00000013164
Tetraodon
sp. (Tetraodon) : GSTENT00030714001
Takifugu
sp. (Fugu) : SINFRUT00000129326
Rattus
sp. (Rat) : XM_001068890
Pan
sp. (Chimpanzee) : XM_001137951
Danio
sp. (Zebrafish) : XM_001921889
Gallus
sp. (Chicken) : XM_419888
Bos
sp. (Cow) : XM_610591
Canis
sp. (Dog) : XM_848166
HIX0005996
HIT000259019_03
(
BC030797
)
(Protein FAM135A isoform b.)
genome : 71,138,002 - 71,270,874 (132,873)
query : 31 - 5,228 (5,198/5,276)
20 exons
identity = 1.000
5'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 11, mito 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000102651 (
ENST00000194672
)
(Protein FAM135A isoform b.)
genome : 71,138,002 - 71,270,874 (132,873)
query : 1 - 5,198 (5,198/5,198)
20 exons
identity = 1.000
5'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 11, mito 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000605971 (
ENST00000505868
)
(Protein FAM135A isoform c.)
genome : 71,138,046 - 71,267,397 (129,352)
query : 1 - 5,173 (5,173/5,173)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000002658
(
AK000183
)
(Protein FAM135A isoform c.)
genome : 71,138,089 - 71,234,305 (96,217)
query : 12 - 1,785 (1,774/1,801)
12 exons
identity = 0.999
5'(0.971;0.988;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto_nucl 5, cyto 4.5, pero 4, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000384360
(
AK225230
)
(Protein FAM135A isoform c.)
genome : 71,138,089 - 71,234,305 (96,217)
query : 12 - 1,785 (1,774/1,801)
12 exons
identity = 0.999
5'(0.971;0.988;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.994
InterPro :
IPR022122 : Protein FAM135
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto_nucl 5, cyto 4.5, pero 4, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000476757 (
ENST00000393299
)
(Protein FAM135A isoform c.)
genome : 71,138,089 - 71,234,311 (96,223)
query : 1 - 1,780 (1,780/1,780)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto_nucl 5, cyto 4.5, pero 4, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000004385
(
AK001911
)
(Protein FAM135A isoform b.)
genome : 71,195,865 - 71,214,663 (18,799)
query : 18 - 2,475 (2,458/2,475)
3 exons
identity = 0.999
5'(0.976;1.000;1.000)3'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 14, cyto_nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000523349 (
ENST00000425415
)
(Protein FAM135A isoform b.)
genome : 71,195,865 - 71,214,663 (18,799)
query : 18 - 2,475 (2,458/2,475)
3 exons
identity = 1.000
5'(0.988;1.000;1.000)3'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, extr 8, cyto_nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0033262
HIT000097972
(
BC044916
)
Representative transcript
(Conserved hypothetical protein.)
genome : 71,221,818 - 71,225,656 (3,839)
query : 5 - 3,842 (3,838/3,908)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 10.8333, cyto 10, nucl 6.5,
cyto_plas 6.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033262)
HIX0005996
HIT000025416
(
AL136820
)
(Protein FAM135A isoform b.)
genome : 71,234,043 - 71,270,874 (36,832)
query : 14 - 4,551 (4,538/4,562)
8 exons
identity = 0.999
5'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
0.997)3'
coverage = 0.997
InterPro :
IPR007751 : Domain of unknown function DUF676, lipase-like
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 14, cyto 12, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000048420
(
AK128547
)
(Protein FAM135A isoform b.)
genome : 71,234,632 - 71,270,865 (36,234)
query : 14 - 3,284 (3,271/3,284)
9 exons
identity = 0.998
5'(1.000;0.996;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 0.996
InterPro :
IPR007751 : Domain of unknown function DUF676, lipase-like
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.3333, cyto 10, cyto_golg 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000006913
(
AK023639
)
(Protein FAM135A isoform b.)
genome : 71,235,490 - 71,267,397 (31,908)
query : 2 - 2,472 (2,471/2,472)
7 exons
identity = 0.999
5'(0.999;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR007751 : Domain of unknown function DUF676, lipase-like
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 12, cyto 10.5, mito 3, lyso 2,
cysk 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000247878
(
AJ420590
)
(Protein FAM135A isoform b.)
genome : 71,238,011 - 71,270,876 (32,866)
query : 9 - 2,067 (2,059/2,084)
6 exons
identity = 1.000
5'(0.993;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007751 : Domain of unknown function DUF676, lipase-like
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 14, cyto 11, extr 2, nucl 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000607071 (
ENST00000507049
)
(Protein FAM135A isoform b.)
genome : 71,245,610 - 71,248,049 (2,440)
query : 1 - 561 (561/561)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000004541
(
AK002067
)
(Protein FAM135A isoform b.)
genome : 71,245,966 - 71,270,863 (24,898)
query : 1 - 1,819 (1,819/1,819)
4 exons
identity = 0.998
5'(1.000;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25.5, mito_pero 14, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000262048
(
BC065767
)
(Protein FAM135A isoform b.)
genome : 71,266,401 - 71,270,874 (4,474)
query : 4 - 1,625 (1,622/1,654)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 11, mito 7, extr 6, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0005996
HIT000605788 (
ENST00000505675
)
(Protein FAM135A isoform b.)
genome : 71,266,401 - 71,270,874 (4,474)
query : 1 - 1,622 (1,622/1,622)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 11, mito 7, extr 6, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005996)
HIX0032985
HIT000038259
(
BC018085
)
(Protein of unknown function DUF1674 family protein.)
genome : 71,276,620 - 71,299,267 (22,648)
query : 1 - 1,191 (1,191/1,218)
3 exons
identity = 0.991
5'(0.989;0.993;0.991)3'
coverage = 1.000
InterPro :
IPR012875 : Protein of unknown function DUF1674
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032985)
HIX0032985
HIT000351754 (
ENST00000370474
)
(Protein of unknown function DUF1674 family protein.)
genome : 71,276,620 - 71,299,272 (22,653)
query : 1 - 1,196 (1,196/1,196)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29.5, mito_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032985)
HIX0032985
HIT000573196 (
ENST00000468640
)
(Hypothetical short protein.)
genome : 71,276,620 - 71,277,362 (743)
query : 1 - 332 (332/332)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032985)
HIX0032985
HIT000213173 (
NM_145267
)
(Protein of unknown function DUF1674 family protein.)
genome : 71,276,625 - 71,298,606 (21,982)
query : 2 - 526 (525/526)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29.5, mito_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032985)
HIX0032985
HIT000337799
(
BC104649
)
Representative transcript
(Protein of unknown function DUF1674 family protein.)
genome : 71,276,630 - 71,298,559 (21,930)
query : 2 - 474 (473/515)
3 exons
identity = 0.998
5'(1.000;1.000;0.996)3'
coverage = 0.971
InterPro :
IPR012875 : Protein of unknown function DUF1674
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29.5, mito_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032985)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK015824
Bos
sp. (Cow) : BC111629
Gallus
sp. (Chicken) : BX950279
Tetraodon
sp. (Tetraodon) : CR714206
Equus
sp. (Horse) : ENSECAT00000022654
Oryzias
sp. (Medaka) : ENSORLT00000001144
Danio
sp. (Zebrafish) : NM_001030184
Takifugu
sp. (Fugu) : SINFRUT00000180412
Rattus
sp. (Rat) : XM_001062645
Macaca
sp. (Macaque) : XM_001108142
Monodelphis
sp. (Opossum) : XM_001373134
Pan
sp. (Chimpanzee) : XM_527430
Canis
sp. (Dog) : XM_848461
HIX0184467
HIT000201339_03 (
NM_004595
)
(Spermidine/spermine synthases family protein.)
genome : 71,317,461 - 71,319,128 (1,668)
query : 162 - 1,838 (1,677/1,868)
1 exon
identity = 0.964
3'(0.964)5'
coverage = 0.912
EC number :
EC 2.5.1.22
KEGG pathway :
00270 : Cysteine and methionine metabolism (61)
00330 : Arginine and proline metabolism (98)
00410 : beta-Alanine metabolism (34)
00480 : Glutathione metabolism (37)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, pero 2, extr 1, nucl 1, mito 1, lyso 1,
cysk 1, mito_nucl 1
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0184467)
HIX0184467
HIT000505034_03 (
ENST00000404933
)
(Spermidine/spermine synthases family protein.)
genome : 71,317,462 - 71,319,128 (1,667)
query : 162 - 1,837 (1,676/1,837)
1 exon
identity = 0.964
3'(0.964)5'
coverage = 0.912
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, pero 2, extr 1, nucl 1, mito 1, lyso 1,
cysk 1, mito_nucl 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0184467)
HIX0184467
HIT000552012 (
ENST00000454078
)
(Conserved hypothetical protein.)
genome : 71,317,937 - 71,319,037 (1,101)
query : 1 - 1,101 (1,101/1,101)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.1667, cyto 13, cyto_plas 8.5, mito 8,
nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0184467)
HIX0184467
HIT000582212_02 (
ENST00000478094
)
(Spermidine/spermine synthases family protein.)
genome : 71,318,503 - 71,319,084 (582)
query : 1 - 488 (488/488)
2 exons
identity = 0.959
3'(0.971;0.945)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.6667, cyto 16, cyto_plas 10.3333, nucl 9,
extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0184467)
HIX0165255
HIT000504778 (
ENST00000404247
)
(Conserved hypothetical protein.)
genome : 71,373,205 - 71,373,982 (778)
query : 1 - 778 (778/778)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 13, cyto_nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165255)
HIX0005999
HIT000208487 (
NM_021940
)
(Stromal membrane-associated protein 1 isoform B.)
genome : 71,377,479 - 71,571,715 (194,237)
query : 1 - 3,249 (3,249/3,263)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.5, nucl 8.5, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000397667 (
NM_001044305
)
(Stromal membrane-associated protein 1;)
genome : 71,377,479 - 71,571,715 (194,237)
query : 1 - 3,330 (3,330/3,344)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 11.5, cyto 11.5, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000351735 (
ENST00000370455
)
(Stromal membrane-associated protein 1;)
genome : 71,377,479 - 71,571,718 (194,240)
query : 1 - 3,333 (3,333/3,333)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 11.5, cyto 11.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000121116 (
ENST00000316999
)
(Stromal membrane-associated protein 1 isoform B.)
genome : 71,377,479 - 71,570,869 (193,391)
query : 1 - 2,403 (2,403/2,403)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.5, nucl 8.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000351732 (
ENST00000370452
)
(Stromal membrane-associated protein 1;)
genome : 71,377,479 - 71,570,869 (193,391)
query : 1 - 2,491 (2,491/2,491)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11, nucl 7.5, mito 6, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000243062
(
AF442495
)
(Stromal membrane-associated protein 1 isoform B.)
genome : 71,377,576 - 71,571,715 (194,140)
query : 1 - 3,153 (3,153/3,164)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.5, nucl 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000434445
(
AK315579
)
(Stromal membrane-associated protein 1;)
genome : 71,377,596 - 71,570,037 (192,442)
query : 1 - 1,454 (1,454/1,454)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;1.000)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.5, nucl 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000040425
(
BC028074
)
(Stromal membrane-associated protein 1 isoform B.)
genome : 71,377,602 - 71,570,870 (193,269)
query : 1 - 2,281 (2,281/2,335)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.5, nucl 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000087129
(
BC008672
)
(Stromal membrane-associated protein 1;)
genome : 71,377,612 - 71,483,137 (105,526)
query : 1 - 537 (537/554)
4 exons
identity = 0.993
5'(0.996;1.000;1.000;0.965)3'
coverage = 0.994
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 9.5, cyto_nucl 9.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000051637
(
BC036123
)
(Stromal membrane-associated protein 1;)
genome : 71,377,621 - 71,571,715 (194,095)
query : 1 - 3,188 (3,188/3,219)
11 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.997;0.998)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 11.5, cyto 11.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000498011
(
AK303387
)
(Stromal membrane-associated protein 1;)
genome : 71,377,621 - 71,508,403 (130,783)
query : 1 - 1,345 (1,345/1,345)
6 exons
identity = 0.999
5'(1.000;1.000;0.988;1.000;0.999;1.000)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 9.5, cyto_nucl 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000520268 (
ENST00000422334
)
(Stromal membrane-associated protein 1;)
genome : 71,377,621 - 71,483,137 (105,517)
query : 1 - 1,310 (1,310/1,310)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 9.5, cyto_nucl 8, extr_plas 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000006495
(
AK023221
)
(Stromal membrane-associated protein 1 isoform B.)
genome : 71,377,659 - 71,570,869 (193,211)
query : 1 - 2,314 (2,314/2,314)
11 exons
identity = 0.997
5'(0.995;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.956;0.999)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11, nucl 7.5, mito 6, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000083932
(
AY055003
)
Representative transcript
(Stromal membrane-associated protein 1;)
genome : 71,377,659 - 71,570,869 (193,211)
query : 1 - 2,304 (2,304/2,304)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 11.5, cyto 11.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK132868
Danio
sp. (Zebrafish) : BC124755
Canis
sp. (Dog) : DQ999010
Gallus
sp. (Chicken) : ENSGALT00000025716
Macaca
sp. (Macaque) : ENSMMUT00000040421
Oryzias
sp. (Medaka) : ENSORLT00000015908
Pongo
sp. (Orangutan) : ENSPPYT00000019499
Pan
sp. (Chimpanzee) : ENSPTRT00000046173
Tetraodon
sp. (Tetraodon) : GSTENT00035831001
Takifugu
sp. (Fugu) : SINFRUT00000147143
Monodelphis
sp. (Opossum) : XM_001365363
Equus
sp. (Horse) : XM_001500669
Bos
sp. (Cow) : XM_594160
HIX0005999
HIT000083933
(
AY055004
)
(Stromal membrane-associated protein 1 isoform B.)
genome : 71,377,659 - 71,570,869 (193,211)
query : 1 - 2,223 (2,223/2,223)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.5, nucl 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000330491
(
AK222711
)
(Stromal membrane-associated protein 1;)
genome : 71,377,677 - 71,570,159 (192,483)
query : 1 - 1,495 (1,495/1,495)
10 exons
identity = 0.999
5'(0.994;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.5, nucl 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000423245
(
AK290448
)
(Stromal membrane-associated protein 1;)
genome : 71,377,697 - 71,570,207 (192,511)
query : 1 - 1,604 (1,604/1,604)
11 exons
identity = 0.998
5'(0.993;1.000;1.000;1.000;1.000;1.000;0.989;
1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 11.5, cyto 11.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000426673
(
AK307807
)
(Stromal membrane-associated protein 1;)
genome : 71,378,235 - 71,570,087 (191,853)
query : 1 - 1,520 (1,520/1,520)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.988;1.000;
1.000;0.994;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001164 : Arf GTPase activating protein
GO :
0008060 : Molecular Function : ARF GTPase activator activity
0008270 : Molecular Function : zinc ion binding
0032312 : Biological Process : regulation of ARF GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, E.R._mito 9, extr 8, cyto 4.5, cyto_nucl 3.5,
E.R. 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000044112
(
AK124239
)
(Conserved hypothetical protein.)
genome : 71,378,614 - 71,570,876 (192,263)
query : 1 - 2,429 (2,429/2,429)
12 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;0.922;1.000;0.988;
1.000;1.000;0.994;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 10.5, mito 9, nucl 4.5,
E.R._mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0217111
HIT000684766 (
ENST00000572103
)
(TMEM192 family protein.)
genome : 71,403,542 - 71,404,322 (781)
query : 1 - 781 (781/781)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, extr 16, extr_plas 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217111)
HIX0165258
HIT000504787 (
ENST00000404262
)
(Acyl carrier protein-like domain containing protein.)
genome : 71,444,206 - 71,444,665 (460)
query : 1 - 460 (460/460)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 16, cyto_plas 13.5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165258)
HIX0005999
HIT000542980 (
ENST00000445046
)
(Stromal membrane-associated protein 1;)
genome : 71,482,632 - 71,501,472 (18,841)
query : 1 - 578 (578/578)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 8, cyto_nucl 6, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000537366 (
ENST00000439432
)
(Stromal membrane-associated protein 1;)
genome : 71,483,092 - 71,547,615 (64,524)
query : 1 - 419 (419/419)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0005999
HIT000028779
(
AL833906
)
(Stromal membrane-associated protein 1;)
genome : 71,562,318 - 71,570,870 (8,553)
query : 1 - 1,498 (1,498/1,586)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito_nucl 11.1667, nucl 11, mito 11, cyto_nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0006000
HIT000104268 (
ENST00000230053
)
(Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2; EC=2.4.1.135; Beta-1,3-glucuronyltransferase 2; GlcAT-D; UDP-glucuronosyltransferase S; GlcAT-S; Glucuronosyltransferase S;)
genome : 71,566,382 - 71,666,741 (100,360)
query : 1 - 6,565 (6,565/6,565)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.135
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
00534 : Glycosaminoglycan biosynthesis - heparan sulfate (11)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, golg 9, E.R. 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006000)
HIX0005999
HIT000015120
(
AK074340
)
(Stromal membrane-associated protein 1;)
genome : 71,566,686 - 71,571,695 (5,010)
query : 1 - 2,150 (2,150/2,238)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15.5, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005999)
HIX0006000
HIT000001678
(
AB075843
)
Representative transcript
(Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2; EC=2.4.1.135; Beta-1,3-glucuronyltransferase 2; GlcAT-D; UDP-glucuronosyltransferase S; GlcAT-S; Glucuronosyltransferase S;)
genome : 71,566,916 - 71,666,741 (99,826)
query : 1 - 6,031 (6,031/6,031)
4 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.135
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
00534 : Glycosaminoglycan biosynthesis - heparan sulfate (11)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, golg 9, E.R. 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006000)
Ortholog candidate ( ->
Evola
)
Tetraodon
sp. (Tetraodon) : AJ888980
Takifugu
sp. (Fugu) : AJ888981
Canis
sp. (Dog) : AJ888982
Gallus
sp. (Chicken) : AJ889606
Bos
sp. (Cow) : AJ890840
Pan
sp. (Chimpanzee) : AJ890841
Mus
sp. (Mouse) : AK220433
Danio
sp. (Zebrafish) : BC078400
Equus
sp. (Horse) : ENSECAT00000024889
Monodelphis
sp. (Opossum) : ENSMODT00000023567
Pongo
sp. (Orangutan) : ENSPPYT00000019501
HIX0006000
HIT000011862
(
AK055248
)
(Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2; EC=2.4.1.135; Beta-1,3-glucuronyltransferase 2; GlcAT-D; UDP-glucuronosyltransferase S; GlcAT-S; Glucuronosyltransferase S;)
genome : 71,568,019 - 71,665,664 (97,646)
query : 1 - 2,596 (2,596/2,596)
5 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.135
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
00534 : Glycosaminoglycan biosynthesis - heparan sulfate (11)
01100 : Metabolic pathways (1346)
InterPro :
IPR005027 : Glycosyl transferase, family 43
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0015018 : Molecular Function : galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006000)
HIX0006000
HIT000422815
(
AK290018
)
(Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2; EC=2.4.1.135; Beta-1,3-glucuronyltransferase 2; GlcAT-D; UDP-glucuronosyltransferase S; GlcAT-S; Glucuronosyltransferase S;)
genome : 71,570,923 - 71,665,688 (94,766)
query : 1 - 971 (971/971)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.135
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
00534 : Glycosaminoglycan biosynthesis - heparan sulfate (11)
01100 : Metabolic pathways (1346)
InterPro :
IPR005027 : Glycosyl transferase, family 43
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0015018 : Molecular Function : galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006000)
HIX0006000
HIT000211912 (
NM_080742
)
(Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2; EC=2.4.1.135; Beta-1,3-glucuronyltransferase 2; GlcAT-D; UDP-glucuronosyltransferase S; GlcAT-S; Glucuronosyltransferase S;)
genome : 71,571,069 - 71,666,788 (95,720)
query : 1 - 1,925 (1,925/1,925)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.135
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
00534 : Glycosaminoglycan biosynthesis - heparan sulfate (11)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, golg 9, E.R. 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006000)
HIX0006000
HIT000084158
(
AY070019
)
(Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2; EC=2.4.1.135; Beta-1,3-glucuronyltransferase 2; GlcAT-D; UDP-glucuronosyltransferase S; GlcAT-S; Glucuronosyltransferase S;)
genome : 71,571,366 - 71,666,132 (94,767)
query : 1 - 972 (972/972)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.135
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
00534 : Glycosaminoglycan biosynthesis - heparan sulfate (11)
01100 : Metabolic pathways (1346)
InterPro :
IPR005027 : Glycosyl transferase, family 43
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0015018 : Molecular Function : galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, golg 9, E.R. 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006000)
HIX0006000
HIT000336571
(
BC101163
)
(Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2; EC=2.4.1.135; Beta-1,3-glucuronyltransferase 2; GlcAT-D; UDP-glucuronosyltransferase S; GlcAT-S; Glucuronosyltransferase S;)
genome : 71,571,366 - 71,666,132 (94,767)
query : 1 - 612 (612/612)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.135
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
00534 : Glycosaminoglycan biosynthesis - heparan sulfate (11)
01100 : Metabolic pathways (1346)
InterPro :
IPR005027 : Glycosyl transferase, family 43
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0015018 : Molecular Function : galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12, E.R. 9, golg 5, extr_plas 3, cyto_golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006000)
HIX0006000
HIT000336573
(
BC101165
)
(Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2; EC=2.4.1.135; Beta-1,3-glucuronyltransferase 2; GlcAT-D; UDP-glucuronosyltransferase S; GlcAT-S; Glucuronosyltransferase S;)
genome : 71,571,366 - 71,666,132 (94,767)
query : 1 - 701 (701/701)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.135
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
00534 : Glycosaminoglycan biosynthesis - heparan sulfate (11)
01100 : Metabolic pathways (1346)
InterPro :
IPR005027 : Glycosyl transferase, family 43
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0015018 : Molecular Function : galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, E.R. 8, golg 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006000)
HIX0006000
HIT000340636
(
BC113995
)
(Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2; EC=2.4.1.135; Beta-1,3-glucuronyltransferase 2; GlcAT-D; UDP-glucuronosyltransferase S; GlcAT-S; Glucuronosyltransferase S;)
genome : 71,571,366 - 71,666,132 (94,767)
query : 1 - 756 (756/756)
4 exons
identity = 0.999
3'(1.000;1.000;1.000;0.997)5'
coverage = 1.000
EC number :
EC 2.4.1.135
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
00534 : Glycosaminoglycan biosynthesis - heparan sulfate (11)
01100 : Metabolic pathways (1346)
InterPro :
IPR005027 : Glycosyl transferase, family 43
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0015018 : Molecular Function : galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, E.R. 5, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006000)
HIX0207434
eHIT000019991 ( ESTsASS_6_641 )
Representative transcript
(Non-protein coding transcript.)
genome : 71,738,294 - 71,767,333 (29,040)
query : 1 - 712 (712/712)
2 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207434)
ESTs used for assembly :
DT217266
HIX0165471
HIT000506163 (
ENST00000407947
)
(Conserved hypothetical protein.)
genome : 71,785,267 - 71,786,078 (812)
query : 1 - 812 (812/812)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, extr 10, mito 5, extr_plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165471)
HIX0165172
HIT000121105_02 (
ENST00000316963
)
(Phospholipase/carboxylesterase/thioesterase domain containing protein.)
genome : 71,874,683 - 71,877,159 (2,477)
query : 99 - 2,574 (2,476/2,574)
1 exon
identity = 0.975
5'(0.975)3'
coverage = 0.962
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 12.3333, cyto_pero 10.8333,
mito 6, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165172)
HIX0165172
HIT000617921_01 (
ENST00000518546
)
(Phospholipase/carboxylesterase/thioesterase domain containing protein.)
genome : 71,874,683 - 71,875,420 (738)
query : 59 - 746 (688/746)
2 exons
identity = 0.963
5'(0.960;0.964)3'
coverage = 0.922
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 12.3333, extr 8, cyto_pero 7.66667,
nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165172)
HIX0165172
HIT000621315_01 (
ENST00000522007
)
(Phospholipase/carboxylesterase/thioesterase domain containing protein.)
genome : 71,874,747 - 71,875,359 (613)
query : 1 - 250 (250/250)
2 exons
identity = 0.964
5'(0.969;0.959)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, nucl 7.5, cyto_nucl 6.33333,
mito_nucl 6.33333, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165172)
HIX0165172
HIT000135861_02 (
ENST00000343231
)
(Phospholipase/carboxylesterase/thioesterase domain containing protein.)
genome : 71,874,774 - 71,876,131 (1,358)
query : 1 - 1,308 (1,308/1,308)
2 exons
identity = 0.976
5'(0.962;0.977)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12, mito 6, nucl 3.5, extr 3,
E.R._mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165172)
HIX0165172
HIT000504202 (
ENST00000402650
)
(Phospholipase/carboxylesterase/thioesterase domain containing protein.)
genome : 71,874,779 - 71,875,473 (695)
query : 1 - 695 (695/695)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 7.5, cyto_nucl 7.5, nucl 4.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165172)
HIX0006003
HIT000714151 (
ENST00000602418
)
(Conserved hypothetical protein.)
genome : 71,931,160 - 71,994,635 (63,476)
query : 1 - 488 (488/488)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000510685 (
ENST00000412751
)
(Hypothetical short protein.)
genome : 71,961,061 - 72,020,279 (59,219)
query : 1 - 465 (465/465)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 9.5, extr 9, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000521189 (
ENST00000423255
)
(Hypothetical short protein.)
genome : 71,961,067 - 72,020,043 (58,977)
query : 1 - 407 (407/407)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, cyto 11.5, extr 11, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000698084 (
ENST00000586232
)
(Hypothetical short protein.)
genome : 71,961,265 - 72,037,766 (76,502)
query : 1 - 704 (704/704)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 11.5, cyto_nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000702979 (
ENST00000591156
)
(Hypothetical short protein.)
genome : 71,963,387 - 72,037,766 (74,380)
query : 1 - 798 (798/798)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, cyto 3.5, cyto_nucl 3.5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000700452 (
ENST00000588612
)
(Hypothetical short protein.)
genome : 71,986,922 - 72,037,766 (50,845)
query : 1 - 750 (750/750)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000699097 (
ENST00000587253
)
(Hypothetical short protein.)
genome : 71,991,088 - 72,037,766 (46,679)
query : 1 - 766 (766/766)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, extr 12, cyto_nucl 10, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006001
HIT000209284 (
NM_024576
)
(Opioid growth factor receptor (OGFr) conserved domain containing protein.)
genome : 71,998,477 - 72,011,972 (13,496)
query : 1 - 1,739 (1,739/1,755)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15, cyto 9.5, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006001)
HIX0006001
HIT000351715 (
ENST00000370435
)
(Opioid growth factor receptor (OGFr) conserved domain containing protein.)
genome : 71,998,506 - 72,011,973 (13,468)
query : 1 - 1,711 (1,711/1,711)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15, cyto 9.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006001)
HIX0006001
HIT000050713
(
BC018688
)
Representative transcript
(Opioid growth factor receptor (OGFr) conserved domain containing protein.)
genome : 71,998,511 - 72,011,952 (13,442)
query : 2 - 1,683 (1,682/1,712)
7 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 0.999
InterPro :
IPR006757 : Opioid growth factor receptor (OGFr) conserved domain
GO :
0004872 : Molecular Function : receptor activity
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15, cyto 10.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006001)
HIX0006001
HIT000572110 (
ENST00000467503
)
(Conserved hypothetical protein.)
genome : 72,001,065 - 72,003,315 (2,251)
query : 1 - 826 (826/826)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, mito 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006001)
HIX0006003
HIT000714556 (
ENST00000602823
)
(Hypothetical short protein.)
genome : 72,004,876 - 72,127,139 (122,264)
query : 1 - 732 (732/732)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto_nucl 2.5, nucl 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000529984 (
ENST00000432050
)
(Hypothetical short protein.)
genome : 72,004,876 - 72,020,298 (15,423)
query : 1 - 418 (418/418)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000697884 (
ENST00000586030
)
(Hypothetical short protein.)
genome : 72,004,879 - 72,037,766 (32,888)
query : 1 - 651 (651/651)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto_nucl 2.5, nucl 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006001
HIT000008006
(
AK024732
)
(Opioid growth factor receptor (OGFr) conserved domain containing protein.)
genome : 72,006,062 - 72,011,972 (5,911)
query : 1 - 1,134 (1,134/1,150)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006757 : Opioid growth factor receptor (OGFr) conserved domain
GO :
0004872 : Molecular Function : receptor activity
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 14.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006001)
HIX0216967
HIT000044706
(
AK124833
)
Representative transcript
(Conserved hypothetical protein.)
genome : 72,012,162 - 72,015,285 (3,124)
query : 1 - 3,124 (3,124/3,124)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216967)
HIX0006003
HIT000548932 (
ENST00000450998
)
(Hypothetical short protein.)
genome : 72,012,545 - 72,037,787 (25,243)
query : 1 - 525 (525/525)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto_nucl 2.5, nucl 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000699241 (
ENST00000587397
)
(Hypothetical protein.)
genome : 72,012,669 - 72,037,766 (25,098)
query : 1 - 750 (750/750)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000697736 (
ENST00000585882
)
(Hypothetical short protein.)
genome : 72,012,673 - 72,037,766 (25,094)
query : 1 - 469 (469/469)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11, extr 8, cyto 5.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000698881 (
ENST00000587036
)
(Hypothetical short protein.)
genome : 72,012,681 - 72,037,762 (25,082)
query : 1 - 655 (655/655)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto_nucl 2.5, nucl 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006002
HIT000025634
(
AL137346
)
Representative transcript
(Hypothetical protein.)
genome : 72,016,167 - 72,018,653 (2,487)
query : 1 - 2,486 (2,486/2,503)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006002)
HIX0006003
HIT000532617 (
ENST00000434683
)
(Hypothetical short protein.)
genome : 72,017,644 - 72,037,787 (20,144)
query : 1 - 529 (529/529)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 11, cyto 5, cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000702607 (
ENST00000590780
)
(Hypothetical short protein.)
genome : 72,017,644 - 72,037,766 (20,123)
query : 1 - 680 (680/680)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11, extr 8, cyto 5.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000697799 (
ENST00000585945
)
(Hypothetical short protein.)
genome : 72,017,648 - 72,037,761 (20,114)
query : 1 - 578 (578/578)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 11, cyto 5, cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000701094 (
ENST00000589255
)
(Hypothetical protein.)
genome : 72,017,705 - 72,037,920 (20,216)
query : 1 - 946 (946/946)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 8, mito_pero 8, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000698819 (
ENST00000586974
)
(Conserved hypothetical protein.)
genome : 72,017,729 - 72,021,351 (3,623)
query : 1 - 605 (605/605)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 16, cyto 10, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000698860 (
ENST00000587015
)
(Hypothetical protein.)
genome : 72,017,829 - 72,037,931 (20,103)
query : 1 - 808 (808/808)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 8, mito_pero 8, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006002
HIT000247779
(
AJ420491
)
(Hypothetical short protein.)
genome : 72,017,921 - 72,018,653 (733)
query : 36 - 769 (734/800)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 0.927
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto_mito 11, cyto 9.5, mito 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006002)
HIX0006003
HIT000702048 (
ENST00000590213
)
(Hypothetical protein.)
genome : 72,019,999 - 72,037,766 (17,768)
query : 1 - 656 (656/656)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 8, mito_pero 8, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0165875
HIT000554729 (
ENST00000456795
)
(Hypothetical short protein.)
genome : 72,038,645 - 72,039,509 (865)
query : 1 - 352 (352/352)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165875)
HIX0006003
HIT000511879 (
ENST00000413945
)
(Hypothetical short protein.)
genome : 72,054,056 - 72,129,806 (75,751)
query : 1 - 653 (653/662)
4 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0006003
HIT000534737 (
ENST00000436803
)
(Conserved hypothetical protein.)
genome : 72,054,289 - 72,129,969 (75,681)
query : 1 - 667 (667/667)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 14, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006003)
HIX0033449
HIT000191910
(
L08443
)
Representative transcript
(Conserved hypothetical protein.)
genome : 72,071,630 - 72,072,825 (1,196)
query : 3 - 1,197 (1,195/1,241)
1 exon
identity = 0.987
3'(0.987)5'
coverage = 0.963
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 9.5, cyto_nucl 9.5, mito 9, nucl 8.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033449)
HIX0025152
HIT000047270
(
AK127397
)
Representative transcript
(Conserved hypothetical protein.)
genome : 72,082,956 - 72,085,090 (2,135)
query : 1 - 2,187 (2,187/2,187)
1 exon
identity = 0.973
3'(0.973)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025152)
HIX0121808
HIT000343853 (
ENST00000362224
)
(Non-protein coding transcript.)
genome : 72,086,663 - 72,086,734 (72)
query : 1 - 72 (72/72)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0121808)
HIX0121808
HIT000658000 (
NR_029598
)
(Non-protein coding transcript.)
genome : 72,086,663 - 72,086,734 (72)
query : 1 - 72 (72/72)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0121808)
HIX0025216
HIT000052343
(
BC040204
)
Representative transcript
(Conserved hypothetical protein.)
genome : 72,096,568 - 72,100,532 (3,965)
query : 1 - 3,963 (3,963/3,978)
1 exon
identity = 0.993
3'(0.993)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 5.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025216)
HIX0032939
HIT000198789 (
NM_001858
)
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,448 - 70,922,157 (345,710)
query : 1 - 8,725 (8,725/8,725)
51 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.981;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, pero 4, E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000101421
(
D38163
)
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,448 - 70,917,153 (340,706)
query : 1 - 3,720 (3,720/3,720)
51 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;1.000;0.981;1.000;
1.000;1.000;0.968;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.989;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.981;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.972;1.000;1.000;1.000;1.000;
1.000;0.967)3'
coverage = 1.000
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, pero 4, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000429487
(
AK310621
)
(Collagen alpha-1(III) chain; Precursor;)
genome : 70,576,458 - 70,749,616 (173,159)
query : 1 - 1,632 (1,632/1,632)
15 exons
identity = 0.999
5'(1.000;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19.5, cyto_mito 11, extr 5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000123267 (
ENST00000322773
)
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,463 - 70,919,679 (343,217)
query : 1 - 6,232 (6,232/6,232)
51 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, pero 4, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000386817
(
BC113364
)
Representative transcript
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,480 - 70,917,033 (340,554)
query : 1 - 3,569 (3,569/3,569)
51 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, pero 4, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AB000636
Bos
sp. (Cow) : ENSBTAT00000027953
Oryzias
sp. (Medaka) : ENSORLT00000012972
Pongo
sp. (Orangutan) : ENSPPYT00000019491
Tetraodon
sp. (Tetraodon) : GSTENT00006108001
Tetraodon
sp. (Tetraodon) : GSTENT00030711001
Takifugu
sp. (Fugu) : SINFRUT00000129338
Rattus
sp. (Rat) : XM_001072067
Macaca
sp. (Macaque) : XM_001108025
Pan
sp. (Chimpanzee) : XM_001135236
Monodelphis
sp. (Opossum) : XM_001373032
Equus
sp. (Horse) : XM_001500536
Canis
sp. (Dog) : XM_538993
HIX0032939
HIT000386815
(
BC113362
)
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,480 - 70,917,026 (340,547)
query : 1 - 3,562 (3,562/3,562)
51 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, pero 4, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000196077
(
M63597
)
(Collagen alpha-1(IV) chain; Contains: Arresten; Precursor;)
genome : 70,608,838 - 70,856,762 (247,925)
query : 16 - 1,798 (1,783/1,798)
25 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.964;0.981;1.000;1.000;1.000;
0.968;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.989;1.000;0.966)3'
coverage = 0.992
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 13, mito 4, nucl 3.5,
mito_pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000192169
(
L12347
)
(Collagen alpha-1(IV) chain; Contains: Arresten; Precursor;)
genome : 70,637,892 - 70,875,904 (238,013)
query : 43 - 2,157 (2,115/2,157)
33 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.989;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.981;1.000;1.000;1.000)3'
coverage = 0.981
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto 11.5, cyto_pero 7, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0005995
HIT000311122 (
ENST00000357250
)
(Collagen alpha-1(IX) chain; Precursor;)
genome : 70,924,764 - 71,012,786 (88,023)
query : 1 - 4,761 (4,761/4,761)
38 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9, E.R. 7.5, extr 6, E.R._golg 5.5, pero 4,
lyso 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005995)
HIX0005995
HIT000198783 (
NM_001851
)
(Collagen alpha-1(IX) chain; Precursor;)
genome : 70,925,743 - 71,012,786 (87,044)
query : 1 - 3,782 (3,782/3,805)
38 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9, E.R. 7.5, extr 6, E.R._golg 5.5, pero 4,
lyso 3, extr_plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005995)
HIX0005995
HIT000211751 (
NM_078485
)
(Collagen alpha-1(IX) chain isoform 2 precursor.)
genome : 70,925,743 - 70,992,911 (67,169)
query : 1 - 3,050 (3,050/3,073)
32 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005995)
HIX0005995
HIT000122546 (
ENST00000320755
)
(Collagen alpha-1(IX) chain isoform 2 precursor.)
genome : 70,925,735 - 70,992,912 (67,178)
query : 1 - 3,059 (3,059/3,059)
32 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005995)
HIX0005995
HIT000351779 (
ENST00000370499
)
(Collagen alpha-1(IX) chain isoform 2 precursor.)
genome : 70,925,744 - 70,992,755 (67,012)
query : 1 - 2,893 (2,893/2,893)
31 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.931;0.952;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005995)
HIX0005995
HIT000261100
(
BC063646
)
Representative transcript
(Collagen alpha-1(IX) chain isoform 2 precursor.)
genome : 70,926,226 - 70,992,885 (66,660)
query : 1 - 2,540 (2,540/2,556)
32 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.978;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR008160 : Collagen triple helix repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005995)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : AF419343
Mus
sp. (Mouse) : AK031071
Danio
sp. (Zebrafish) : BC068419
Oryzias
sp. (Medaka) : ENSORLT00000013075
Pongo
sp. (Orangutan) : ENSPPYT00000019492
Tetraodon
sp. (Tetraodon) : GSTENT00004893001
Tetraodon
sp. (Tetraodon) : GSTENT00030712001
Gallus
sp. (Chicken) : K01702
Rattus
sp. (Rat) : S67620
Takifugu
sp. (Fugu) : SINFRUT00000156169
Macaca
sp. (Macaque) : XM_001111640
Pan
sp. (Chimpanzee) : XM_001136406
Monodelphis
sp. (Opossum) : XM_001373052
Equus
sp. (Horse) : XM_001918179
Canis
sp. (Dog) : XM_538994
Danio
sp. (Zebrafish) : XM_690434
HIX0005995
HIT000045611
(
AK125738
)
(Collagen alpha-1(IX) chain; Precursor;)
genome : 70,926,446 - 70,990,180 (63,735)
query : 1 - 1,940 (1,940/1,940)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR008160 : Collagen triple helix repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 11.5, extr 7, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005995)
HIX0005995
HIT000593208 (
ENST00000489611
)
(Collagen alpha-1(IX) chain; Precursor;)
genome : 70,926,446 - 70,990,180 (63,735)
query : 1 - 1,940 (1,940/1,940)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 11.5, extr 7, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005995)
HIX0005995
HIT000321892
(
X54412
)
(Collagen alpha-1(IX) chain; Precursor;)
genome : 70,926,569 - 71,012,751 (86,183)
query : 8 - 2,927 (2,920/2,927)
38 exons
identity = 0.997
3'(0.981;0.987;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.981;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.974;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9, E.R. 7.5, extr 6, E.R._golg 5.5, pero 4,
lyso 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005995)
HIX0005995
HIT000087112
(
BC008620
)
(Collagen alpha-1(IX) chain isoform 2 precursor.)
genome : 70,950,397 - 70,992,838 (42,442)
query : 1 - 1,428 (1,428/1,443)
26 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.978;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR008160 : Collagen triple helix repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, E.R. 6, lyso 3, golg 3, E.R._mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005995)
HIX0217173
HIT000339822
(
BC110999
)
Representative transcript
(Opioid growth factor receptor (OGFr) conserved domain containing protein.)
genome : 71,998,520 - 72,158,906 (160,387)
query : 15 - 2,018 (2,004/2,045)
8 exons
identity = 0.994
5'(0.997;1.000;1.000;1.000;1.000;0.993;0.998)3'
coverage = 0.987
InterPro :
IPR006757 : Opioid growth factor receptor (OGFr) conserved domain
GO :
0004872 : Molecular Function : receptor activity
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15, cyto 10.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217173)
HIX0217173
HIT000427489
(
AK308623
)
(Opioid growth factor receptor (OGFr) conserved domain containing protein.)
genome : 72,008,103 - 72,012,172 (4,070)
query : 1 - 1,352 (1,352/1,352)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006757 : Opioid growth factor receptor (OGFr) conserved domain
GO :
0004872 : Molecular Function : receptor activity
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 5.5, cyto_nucl 5, nucl 3.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217173)
HIX0207434
eHIT000019991 ( ESTsASS_6_641 )
Representative transcript
(Non-protein coding transcript.)
genome : 71,738,294 - 71,767,333 (29,040)
query : 1 - 712 (712/712)
2 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207434)
ESTs used for assembly :
DT217266
AL590702.17
70500001-70525282 F +
NCBI
AL359539.11
70525283-70638506 F +
NCBI
AL118519.25
70638507-70757286 F -
NCBI
AL133388.7
70757287-70845614 F +
NCBI
AL136445.9
70845615-70897391 F -
NCBI
AL160262.12
70897392-70950887 F +
NCBI
AL080275.20
70950888-71064770 F +
NCBI
AL365226.9
71064771-71126997 F +
NCBI
AL078591.18
71126998-71271546 F +
NCBI
AL583856.6
71271547-71351001 F +
NCBI
AL354943.9
71351002-71502346 F -
NCBI
AL591049.5
71502347-71545378 F +
NCBI
AL121961.8
71545379-71627678 F +
NCBI
AL450320.4
71627679-71719597 F +
NCBI
AL096709.11
71719598-71857522 F -
NCBI
AL365267.11
71857523-71907038 F +
NCBI
AL589935.8
71907039-71996950 F +
NCBI
AL136164.8
71996951-72100000 F -
NCBI