bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0021317
HIT000213981 (
NM_152730
)
(Protein broad-minded.)
genome : 121,400,627 - 121,655,644 (255,018)
query : 1 - 5,132 (5,132/5,132)
32 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 25, nucl 3, plas 2, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000481417 (
ENST00000398197
)
(Protein broad-minded;)
genome : 121,400,640 - 121,558,208 (157,569)
query : 1 - 2,690 (2,690/2,690)
12 exons
identity = 0.997
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 9, mito 8, extr 5, mito_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000046132
(
AK126259
)
(Protein broad-minded;)
genome : 121,400,642 - 121,558,208 (157,567)
query : 1 - 2,690 (2,690/2,690)
12 exons
identity = 0.994
3'(0.991;0.989)5'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
IPR005373 : Uncharacterised protein family UPF0183
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, mito 10, cyto_nucl 7.5, extr 6,
mito_pero 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000016421
(
AK091554
)
(Protein broad-minded.)
genome : 121,401,383 - 121,655,626 (254,244)
query : 1 - 3,431 (3,431/3,431)
29 exons
identity = 0.992
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;1.000;0.983;1.000;
1.000;1.000;1.000;0.992;1.000;0.994;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR005373 : Uncharacterised protein family UPF0183
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 25, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000249734
(
AK131446
)
Representative transcript
(Protein broad-minded.)
genome : 121,401,383 - 121,655,624 (254,242)
query : 3 - 5,325 (5,323/5,325)
36 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.983;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;0.995)5'
coverage = 1.000
InterPro :
IPR005373 : Uncharacterised protein family UPF0183
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, nucl 6, E.R. 5.5, pero 4, E.R._mito 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : BC134452
Equus
sp. (Horse) : ENSECAT00000006765
Macaca
sp. (Macaque) : ENSMMUT00000024901
Oryzias
sp. (Medaka) : ENSORLT00000022048
Pongo
sp. (Orangutan) : ENSPPYT00000019754
Tetraodon
sp. (Tetraodon) : GSTENT00035456001
Danio
sp. (Zebrafish) : NM_001100023
Takifugu
sp. (Fugu) : SINFRUT00000140817
Monodelphis
sp. (Opossum) : XM_001379912
Pan
sp. (Chimpanzee) : XM_527493
Canis
sp. (Dog) : XM_541224
Gallus
sp. (Chicken) : XR_026994
HIX0021317
HIT000569360 (
ENST00000464622
)
(Protein broad-minded.)
genome : 121,401,383 - 121,655,624 (254,242)
query : 1 - 5,323 (5,323/5,323)
36 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 6, nucl 3, cyto_pero 3, cyto_plas 3,
cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000111260 (
ENST00000275159
)
(Protein broad-minded.)
genome : 121,401,383 - 121,655,576 (254,194)
query : 1 - 4,431 (4,431/4,431)
33 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000045258
(
AK125385
)
(Protein broad-minded.)
genome : 121,401,383 - 121,613,339 (211,957)
query : 12 - 3,211 (3,200/3,211)
22 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000;1.000;1.000)5'
coverage = 0.997
InterPro :
IPR000195 : Rab-GTPase-TBC domain
IPR005373 : Uncharacterised protein family UPF0183
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, pero 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000012075
(
AK055461
)
(Protein broad-minded.)
genome : 121,401,383 - 121,563,396 (162,014)
query : 1 - 2,323 (2,323/2,323)
16 exons
identity = 0.995
3'(1.000;1.000;0.992;1.000;0.980)5'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
IPR005373 : Uncharacterised protein family UPF0183
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto_nucl 9.5, cyto 9, nucl 8, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000481431 (
ENST00000398212
)
(Protein broad-minded.)
genome : 121,401,917 - 121,655,626 (253,710)
query : 1 - 3,824 (3,824/3,824)
32 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 25, nucl 3, plas 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000520303 (
ENST00000422369
)
(Protein broad-minded.)
genome : 121,629,171 - 121,655,891 (26,721)
query : 1 - 770 (770/770)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 9.5, cyto_nucl 8, mito 4, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0165427
HIT000505919 (
ENST00000407291
)
(Ribosomal protein S8 family protein.)
genome : 121,702,618 - 121,703,006 (389)
query : 1 - 389 (389/389)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 15.6667, cyto_plas 13.5,
nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165427)
HIX0165822
HIT000547993 (
ENST00000450059
)
(Hypothetical short protein.)
genome : 121,711,036 - 121,712,027 (992)
query : 1 - 271 (271/271)
3 exons
identity = 0.971
5'(1.000;0.911;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165822)
HIX0006183
HIT000197214 (
NM_000165
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,745 - 121,770,873 (14,129)
query : 1 - 3,130 (3,130/3,130)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000431190
(
AK312324
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,790 - 121,769,142 (12,353)
query : 9 - 1,363 (1,355/1,363)
2 exons
identity = 0.999
5'(0.995;1.000)3'
coverage = 0.994
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000492388
(
AK297764
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,791 - 121,769,230 (12,440)
query : 1 - 1,393 (1,393/1,393)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000331069
(
AK223289
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,792 - 121,769,618 (12,827)
query : 1 - 1,828 (1,828/1,828)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000492026
(
AK297402
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,793 - 121,769,329 (12,537)
query : 1 - 1,300 (1,300/1,300)
2 exons
identity = 0.996
5'(0.977;0.998)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000489294
(
AK294670
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,793 - 121,769,327 (12,535)
query : 1 - 1,305 (1,305/1,305)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000499772
(
AK316159
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,795 - 121,769,332 (12,538)
query : 1 - 1,233 (1,233/1,233)
2 exons
identity = 0.999
5'(0.981;1.000)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000428243
(
AK309377
)
(Gap junction alpha-1 protein; Connexin-43; Cx43;)
genome : 121,756,795 - 121,769,236 (12,442)
query : 1 - 911 (911/911)
3 exons
identity = 0.996
5'(1.000;1.000;0.992)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR013092 : Connexin, N-terminal
IPR017990 : Connexin, conserved site
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 4, cyto 4, cyto_plas 4,
E.R._mito 3.83333, E.R. 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000428356
(
AK309490
)
(Gap junction alpha-1 protein; Connexin-43; Cx43;)
genome : 121,756,815 - 121,769,849 (13,035)
query : 1 - 957 (957/957)
3 exons
identity = 0.996
5'(1.000;0.953;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000492385
(
AK297761
)
(Gap junction alpha-1 protein; Connexin-43; Cx43;)
genome : 121,756,815 - 121,769,309 (12,495)
query : 1 - 876 (876/876)
3 exons
identity = 0.997
5'(1.000;0.994;0.996)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, cyto 6, mito_pero 4.66667, cyto_pero 4.66667,
E.R._mito 4.16667, plas 4, mito 4, nucl 3, pero 3, cyto_golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000490084
(
AK295460
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,815 - 121,769,233 (12,419)
query : 1 - 1,357 (1,357/1,357)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000196166
(
M65188
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,838 - 121,769,142 (12,305)
query : 9 - 1,314 (1,306/1,314)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.994
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000112253_01 (
ENST00000282561
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,838 - 121,770,873 (14,036)
query : 1 - 3,037 (3,037/3,037)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000321810
(
X52947
)
Representative transcript
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,838 - 121,770,872 (14,035)
query : 1 - 3,038 (3,038/3,038)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB170524
Rattus
sp. (Rat) : AY324140
Canis
sp. (Dog) : AY462223
Danio
sp. (Zebrafish) : BC049297
Bos
sp. (Cow) : BC105464
Monodelphis
sp. (Opossum) : ENSMODT00000022530
Oryzias
sp. (Medaka) : ENSORLT00000019387
Pongo
sp. (Orangutan) : ENSPPYT00000019755
Gallus
sp. (Chicken) : M29003
Takifugu
sp. (Fugu) : SINFRUT00000138127
Pan
sp. (Chimpanzee) : XM_001164230
HIX0006183
HIT000040199
(
BC026329
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,756,907 - 121,770,871 (13,965)
query : 1 - 2,966 (2,966/3,000)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000268533
(
CR541660
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,767,994 - 121,769,139 (1,146)
query : 1 - 1,146 (1,146/1,146)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002261 : Gap junction alpha-1 protein (Cx43)
IPR013092 : Connexin, N-terminal
IPR013124 : Gap junction alpha-1 protein (Cx43), C-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
0007267 : Biological Process : cell-cell signaling
0007507 : Biological Process : heart development
0022857 : Molecular Function : transmembrane transporter activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0006183
HIT000611195_02 (
ENST00000511478
)
(Gap junction alpha-1 protein; Connexin-43; Cx43; Gap junction 43 kDa heart protein;)
genome : 121,767,994 - 121,769,139 (1,146)
query : 1 - 1,143 (1,143/1,143)
1 exon
identity = 0.968
5'(0.968)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006183)
HIX0165386
HIT000505689 (
ENST00000406666
)
(Conserved hypothetical protein.)
genome : 121,799,419 - 121,801,054 (1,636)
query : 1 - 664 (664/664)
4 exons
identity = 0.995
3'(1.000;0.995;0.989;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 15, nucl 10, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165386)
HIX0006185
HIT000048654
(
AK128781
)
Representative transcript
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 121,952,701 - 122,792,984 (840,284)
query : 1 - 2,540 (2,540/2,545)
11 exons
identity = 0.961
3'(0.703;0.979;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR005016 : Serine incorporator/TMS membrane protein
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ719439
Rattus
sp. (Rat) : AY539942
Mus
sp. (Mouse) : BC006940
Danio
sp. (Zebrafish) : BC045456
Pongo
sp. (Orangutan) : CR859032
Equus
sp. (Horse) : ENSECAT00000018513
Oryzias
sp. (Medaka) : ENSORLT00000019453
Tetraodon
sp. (Tetraodon) : GSTENT00006013001
Takifugu
sp. (Fugu) : SINFRUT00000130352
Takifugu
sp. (Fugu) : SINFRUT00000145473
Macaca
sp. (Macaque) : XM_001109167
Pan
sp. (Chimpanzee) : XM_001164526
Bos
sp. (Cow) : XM_001249870
Monodelphis
sp. (Opossum) : XM_001369529
Canis
sp. (Dog) : XM_533483
HIX0165114
HIT000503823 (
ENST00000401679
)
(Cytochrome c oxidase subunit 6C family protein.)
genome : 121,962,155 - 121,962,367 (213)
query : 1 - 213 (213/213)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 6, E.R. 3, cyto_mito 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165114)
HIX0165359
HIT000505487 (
ENST00000406156
)
(Adenine nucleotide translocator 1 family protein.)
genome : 121,974,941 - 121,975,836 (896)
query : 1 - 896 (896/896)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 9.5, cyto_nucl 9, nucl 3.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165359)
HIX0165403
HIT000505776 (
ENST00000406913
)
(Ribosomal protein L25/L23 family protein.)
genome : 122,001,118 - 122,001,605 (488)
query : 1 - 488 (488/488)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, mito 6, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165403)
HIX0165194
HIT000504355 (
ENST00000403062
)
(Conserved hypothetical protein.)
genome : 122,004,071 - 122,005,418 (1,348)
query : 1 - 1,348 (1,348/1,348)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165194)
HIX0122726
HIT000456506
(
DQ589975
)
Representative transcript
(Non-protein coding transcript.)
genome : 122,173,964 - 122,173,993 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0122726)
HIX0184338
HIT000505552 (
ENST00000406327
)
(High mobility group box domain containing protein.)
genome : 122,179,325 - 122,179,914 (590)
query : 1 - 590 (590/590)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 10.5, mito 9, cyto 4.5,
E.R._mito 4.5, mito_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0184338)
HIX0216798
HIT000722828 (
NM_001243094
)
(Heat shock transcription factor family protein.)
genome : 122,720,696 - 122,741,555 (20,860)
query : 1 - 1,056 (1,056/1,088)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216798)
HIX0216798
HIT000032383
(
BC005329
)
Representative transcript
(Heat shock transcription factor family protein.)
genome : 122,720,807 - 122,741,553 (20,747)
query : 6 - 948 (943/979)
7 exons
identity = 0.999
5'(0.994;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.993
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216798)
HIX0216798
HIT000261541
(
BC064622
)
(Heat shock transcription factor family protein.)
genome : 122,720,839 - 122,741,555 (20,717)
query : 1 - 913 (913/945)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216798)
HIX0217061
HIT000569920 (
ENST00000465214
)
(Conserved hypothetical protein.)
genome : 122,743,301 - 122,753,137 (9,837)
query : 1 - 647 (647/647)
5 exons
identity = 0.997
5'(1.000;1.000;0.982;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, mito_pero 4, mito 3.5, pero 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217061)
HIX0022889
HIT000090510
(
BC022047
)
(Conserved hypothetical protein.)
genome : 122,757,941 - 122,759,685 (1,745)
query : 4 - 1,746 (1,743/1,776)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 0.997
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, nucl 4.5, cyto_nucl 3.5, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022889)
HIX0022889
HIT000014328
(
AK057721
)
(Conserved hypothetical protein.)
genome : 122,757,934 - 122,760,368 (2,435)
query : 1 - 2,433 (2,433/2,433)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, extr 11, cyto 7, mito_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022889)
HIX0022889
HIT000016497
(
AK091630
)
Representative transcript
(Conserved hypothetical protein.)
genome : 122,757,939 - 122,760,039 (2,101)
query : 1 - 2,101 (2,101/2,101)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, nucl 4.5, cyto_nucl 3.5, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022889)
HIX0006185
HIT000025549
(
AL137261
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,498 - 122,792,896 (28,399)
query : 1 - 3,067 (3,067/3,092)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005016 : Serine incorporator/TMS membrane protein
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000041768
(
BC033029
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,493 - 122,792,952 (28,460)
query : 1 - 3,128 (3,128/3,144)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005016 : Serine incorporator/TMS membrane protein
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000208053 (
NM_020755
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,493 - 122,792,952 (28,460)
query : 1 - 3,128 (3,128/3,144)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000040590
(
BC028607
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,498 - 122,792,947 (28,450)
query : 3 - 3,120 (3,118/3,135)
10 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;0.990)5'
coverage = 0.999
InterPro :
IPR005016 : Serine incorporator/TMS membrane protein
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000252473
(
AY358429
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,498 - 122,792,969 (28,472)
query : 1 - 3,113 (3,113/3,127)
10 exons
identity = 0.986
3'(0.977;0.996;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005016 : Serine incorporator/TMS membrane protein
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000132327 (
ENST00000339697
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,493 - 122,792,952 (28,460)
query : 1 - 3,128 (3,128/3,128)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000242646
(
AF087902
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,496 - 122,793,026 (28,531)
query : 1 - 3,199 (3,199/3,199)
10 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;0.994;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005016 : Serine incorporator/TMS membrane protein
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000349734 (
ENST00000368454
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,499 - 122,907,269 (142,771)
query : 1 - 3,382 (3,382/3,382)
12 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.897;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000000969
(
AB033079
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,499 - 122,792,939 (28,441)
query : 1 - 3,109 (3,109/3,109)
10 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000082374
(
AK075339
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,501 - 122,792,958 (28,458)
query : 1 - 3,125 (3,125/3,125)
10 exons
identity = 0.997
3'(0.998;1.000;0.993;0.978;1.000;1.000;1.000;
0.994;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005016 : Serine incorporator/TMS membrane protein
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000002161
(
AF164794
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,764,752 - 122,792,936 (28,185)
query : 1 - 2,852 (2,852/2,857)
10 exons
identity = 0.998
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006185
HIT000088394
(
BC014412
)
(Serine incorporator 1; Tumor differentially expressed protein 1-like; Tumor differentially expressed protein 2;)
genome : 122,774,953 - 122,792,947 (17,995)
query : 1 - 616 (616/633)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005016 : Serine incorporator/TMS membrane protein
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006185)
HIX0006187
HIT000318498 (
NM_181794
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,793,062 - 123,047,518 (254,457)
query : 1 - 1,876 (1,876/1,892)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000724665 (
NM_001270393
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,793,062 - 123,047,518 (254,457)
query : 1 - 1,996 (1,996/2,012)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000724666 (
NM_001270394
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,793,062 - 123,047,518 (254,457)
query : 1 - 1,937 (1,937/1,953)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 11.5, cyto 11.5, extr 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000475973 (
ENST00000392491
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,793,062 - 123,047,517 (254,456)
query : 1 - 1,875 (1,875/1,875)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000306484
(
CR749456
)
(Conserved hypothetical protein.)
genome : 122,793,068 - 122,805,315 (12,248)
query : 2 - 6,440 (6,439/6,460)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000247850
(
AJ420562
)
Representative transcript
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,793,083 - 123,047,037 (253,955)
query : 10 - 1,384 (1,375/1,416)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 0.977
InterPro :
IPR004171 : cAMP-dependent protein kinase inhibitor
GO :
0004862 : Molecular Function : cAMP-dependent protein kinase inhibitor activity
0006469 : Biological Process : negative regulation of protein kinase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB173915
Rattus
sp. (Rat) : AF413572
Mus
sp. (Mouse) : AK083875
Bos
sp. (Cow) : BC120128
Danio
sp. (Zebrafish) : BC159108
Equus
sp. (Horse) : ENSECAT00000023860
Pongo
sp. (Orangutan) : ENSPPYT00000019759
Gallus
sp. (Chicken) : XM_001232003
HIX0006187
HIT000475568 (
ENST00000392074
)
(Conserved hypothetical protein.)
genome : 122,907,064 - 122,910,009 (2,946)
query : 1 - 586 (586/586)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 13, nucl 2, mito 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000210660 (
NM_032471
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,931,377 - 123,047,518 (116,142)
query : 1 - 1,812 (1,812/1,828)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000318499 (
NM_181795
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,931,377 - 123,047,518 (116,142)
query : 1 - 1,879 (1,879/1,895)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000475972 (
ENST00000392490
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,931,377 - 123,047,517 (116,141)
query : 1 - 1,811 (1,811/1,811)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000349728 (
ENST00000368448
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,931,377 - 123,047,037 (115,661)
query : 1 - 1,561 (1,561/1,561)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 11, mito 7, cyto 6, extr 4,
mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000349732 (
ENST00000368452
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,931,377 - 123,047,037 (115,661)
query : 1 - 1,398 (1,398/1,398)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000334518
(
BC093027
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,931,542 - 123,047,036 (115,495)
query : 1 - 1,233 (1,233/1,248)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR004171 : cAMP-dependent protein kinase inhibitor
GO :
0004862 : Molecular Function : cAMP-dependent protein kinase inhibitor activity
0006469 : Biological Process : negative regulation of protein kinase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000051579
(
BC036011
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,931,545 - 123,047,515 (115,971)
query : 1 - 1,641 (1,641/1,671)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.998)3'
coverage = 0.999
InterPro :
IPR004171 : cAMP-dependent protein kinase inhibitor
GO :
0004862 : Molecular Function : cAMP-dependent protein kinase inhibitor activity
0006469 : Biological Process : negative regulation of protein kinase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000067499
(
AF087873
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,931,578 - 123,047,036 (115,459)
query : 1 - 1,190 (1,190/1,209)
5 exons
identity = 0.989
5'(0.913;1.000;1.000;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR004171 : cAMP-dependent protein kinase inhibitor
GO :
0004862 : Molecular Function : cAMP-dependent protein kinase inhibitor activity
0006469 : Biological Process : negative regulation of protein kinase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000434017
(
AK315151
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,931,621 - 123,046,340 (114,720)
query : 1 - 457 (457/457)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR004171 : cAMP-dependent protein kinase inhibitor
GO :
0004862 : Molecular Function : cAMP-dependent protein kinase inhibitor activity
0006469 : Biological Process : negative regulation of protein kinase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006186
HIT000009495
(
AK026221
)
Representative transcript
(Conserved hypothetical protein.)
genome : 122,964,533 - 122,965,922 (1,390)
query : 1 - 1,390 (1,390/1,406)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 6, mito 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006186)
HIX0006187
HIT000724667 (
NM_001270395
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,973,874 - 123,047,518 (73,645)
query : 1 - 1,598 (1,598/1,614)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 11.5, cyto 11.5, extr 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000015177
(
AK074397
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,973,877 - 123,047,518 (73,642)
query : 3 - 1,599 (1,597/1,650)
5 exons
identity = 0.996
5'(1.000;1.000;1.000;0.994;0.996)3'
coverage = 0.999
InterPro :
IPR004171 : cAMP-dependent protein kinase inhibitor
GO :
0004862 : Molecular Function : cAMP-dependent protein kinase inhibitor activity
0006469 : Biological Process : negative regulation of protein kinase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 11.5, cyto 11.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000107219 (
ENST00000258014
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 122,973,877 - 123,047,518 (73,642)
query : 1 - 1,595 (1,595/1,595)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 11.5, cyto 11.5, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000074429
(
AF225513
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 123,038,705 - 123,047,036 (8,332)
query : 2 - 1,044 (1,043/1,057)
3 exons
identity = 0.997
5'(1.000;1.000;0.996)3'
coverage = 0.999
InterPro :
IPR004171 : cAMP-dependent protein kinase inhibitor
GO :
0004862 : Molecular Function : cAMP-dependent protein kinase inhibitor activity
0006469 : Biological Process : negative regulation of protein kinase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000308597 (
ENST00000354275
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 123,038,706 - 123,047,037 (8,332)
query : 1 - 1,043 (1,043/1,043)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10.5, cyto 8.5, extr 6, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0006187
HIT000349726 (
ENST00000368446
)
(cAMP-dependent protein kinase inhibitor beta; PKI-beta;)
genome : 123,038,707 - 123,046,426 (7,720)
query : 1 - 556 (556/556)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto 12, extr 6, cyto_mito 6, cyto_pero 6,
cyto_plas 6, cyto_golg 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0006187)
HIX0032875
HIT000349735 (
ENST00000368455
)
(Heat shock factor protein 2; HSF 2; Heat shock transcription factor 2; HSTF 2;)
genome : 122,720,691 - 122,754,111 (33,421)
query : 1 - 2,549 (2,549/2,549)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000201252 (
NM_004506
)
(Heat shock factor protein 2; HSF 2; Heat shock transcription factor 2; HSTF 2;)
genome : 122,720,696 - 122,754,264 (33,569)
query : 1 - 2,697 (2,697/2,697)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000550128 (
ENST00000452194
)
(Heat shock factor protein 2 isoform b.)
genome : 122,720,696 - 122,754,264 (33,569)
query : 1 - 2,643 (2,643/2,643)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000560108 (
NM_001135564
)
(Heat shock factor protein 2 isoform b.)
genome : 122,720,696 - 122,754,264 (33,569)
query : 1 - 2,643 (2,643/2,643)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000384723
(
AK225593
)
(Heat shock factor protein 2 isoform b.)
genome : 122,720,770 - 122,754,102 (33,333)
query : 1 - 2,408 (2,408/2,461)
12 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR010542 : Vertebrate heat shock transcription factor, C-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000384724
(
AK225594
)
(Heat shock factor protein 2 isoform b.)
genome : 122,720,770 - 122,754,102 (33,333)
query : 1 - 2,408 (2,408/2,461)
12 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR010542 : Vertebrate heat shock transcription factor, C-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000340448
(
BC112323
)
Representative transcript
(Heat shock factor protein 2; HSF 2; Heat shock transcription factor 2; HSTF 2;)
genome : 122,720,793 - 122,754,105 (33,313)
query : 1 - 2,441 (2,441/2,550)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR010542 : Vertebrate heat shock transcription factor, C-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AF172640
Danio
sp. (Zebrafish) : AF412832
Equus
sp. (Horse) : AF432178
Mus
sp. (Mouse) : AK052270
Bos
sp. (Cow) : BC114649
Oryzias
sp. (Medaka) : ENSORLT00000019408
Pongo
sp. (Orangutan) : ENSPPYT00000019757
Tetraodon
sp. (Tetraodon) : GSTENT00033688001
Gallus
sp. (Chicken) : L06125
Macaca
sp. (Macaque) : XM_001108944
Monodelphis
sp. (Opossum) : XM_001369473
Canis
sp. (Dog) : XM_533482
Pan
sp. (Chimpanzee) : XR_025613
HIX0032875
HIT000196173
(
M65217
)
(Heat shock factor protein 2; HSF 2; Heat shock transcription factor 2; HSTF 2;)
genome : 122,720,795 - 122,754,078 (33,284)
query : 1 - 2,411 (2,411/2,411)
13 exons
identity = 0.999
5'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR010542 : Vertebrate heat shock transcription factor, C-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000489248
(
AK294624
)
(Heat shock factor protein 2 isoform b.)
genome : 122,720,807 - 122,753,538 (32,732)
query : 2 - 1,807 (1,806/1,807)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000;1.000;1.000;0.998)3'
coverage = 0.999
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR010542 : Vertebrate heat shock transcription factor, C-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000389831
(
BC128420
)
(Heat shock factor protein 2 isoform c.)
genome : 122,720,839 - 122,754,004 (33,166)
query : 1 - 2,240 (2,240/2,248)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996;1.000;1.000;1.000)3'
coverage = 0.996
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR010542 : Vertebrate heat shock transcription factor, C-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000388247
(
BC121050
)
(Heat shock factor protein 2 isoform c.)
genome : 122,720,839 - 122,754,004 (33,166)
query : 1 - 2,240 (2,240/2,240)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR010542 : Vertebrate heat shock transcription factor, C-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000388248
(
BC121051
)
(Heat shock factor protein 2; HSF 2; Heat shock transcription factor 2; HSTF 2;)
genome : 122,720,839 - 122,754,004 (33,166)
query : 1 - 2,294 (2,294/2,294)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR010542 : Vertebrate heat shock transcription factor, C-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
HIX0032875
HIT000499990
(
AK316377
)
(Heat shock factor protein 2 isoform b.)
genome : 122,720,855 - 122,753,583 (32,729)
query : 1 - 1,803 (1,803/1,803)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000232 : Heat shock factor (HSF)-type, DNA-binding
IPR010542 : Vertebrate heat shock transcription factor, C-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR027712 : Heat shock factor protein 2
IPR027725 : Heat shock transcription factor family
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032875)
AL365508.19
121500001-121523583 F +
NCBI
AL590225.4
121523584-121588597 F +
NCBI
AL589910.9
121588598-121655088 F +
NCBI
AL139098.15
121655089-121786489 F +
NCBI
AL138729.11
121786490-121859969 F +
NCBI
AL592079.5
121859970-121937016 F +
NCBI
AL603865.4
121937017-122007503 F +
NCBI
AL591472.7
122007504-122086104 F +
NCBI
Z93931.1
122086105-122232302 F +
NCBI
AL603916.3
122232303-122247471 F +
NCBI
AL596219.2
122247472-122330622 F +
NCBI
AL512323.8
122330623-122533665 F -
NCBI
AL591599.5
122533666-122575839 F +
NCBI
AL121846.6
122575840-122618888 F +
NCBI
AL358112.20
122618889-122709949 F +
NCBI
AL121954.7
122709950-122724034 F +
NCBI
Z99129.1
122724035-122884137 F +
NCBI
AL513481.3
122884138-122910560 F +
NCBI
AL512283.12
122910561-123064137 F +
NCBI
AL645811.2
123064138-123100000 F +
NCBI