Clickable map CGI

HIX0206072
HIT000615040 ( ENST00000515623 )
  (Conserved hypothetical protein.)
  genome : 45,011,557 - 45,053,669 (42,113)
  query : 1 - 672 (672/672)
  6 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0206072)

HIX0205460
HIT000604228 ( ENST00000503971 )
  (Conserved hypothetical protein.)
  genome : 45,325,270 - 45,328,045 (2,776)
  query : 1 - 2,360 (2,360/2,360)
  2 exons
  identity = 0.999
  3'(1.000;0.997)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 18, cyto 8.5, cyto_nucl 6.5, nucl 3.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0205460)

HIX0205913
HIT000612328 ( ENST00000512696 )
  (Conserved hypothetical protein.)
  genome : 45,416,354 - 45,416,927 (574)
  query : 1 - 574 (574/574)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 20.5, cyto_nucl 16.5, cyto 11.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0205913)

HIX0031456
HIT000095668 ( BC039401 )
  Representative transcript
  (Conserved hypothetical protein.)
  genome : 45,683,336 - 45,685,041 (1,706)
  query : 1 - 1,706 (1,706/1,721)
  1 exon
  identity = 0.997
  3'(0.997)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 20, nucl 8, cyto 2, mito 2, cyto_mito 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031456)

HIX0031456
HIT000099000 ( BC048420 )
  (Conserved hypothetical protein.)
  genome : 45,683,336 - 45,685,041 (1,706)
  query : 1 - 1,706 (1,706/1,721)
  1 exon
  identity = 0.997
  3'(0.997)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 20, nucl 8, cyto 2, mito 2, cyto_mito 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031456)

HIX0164100
HIT000508334 ( ENST00000410325 )
  (Hypothetical protein.)
  genome : 45,997,136 - 45,997,440 (305)
  query : 1 - 305 (305/305)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, cyto_nucl 9, nucl 7.5, cyto 7.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0164100)

HIX0004187
HIT000114167 ( ENST00000295452 )
  (Gamma-aminobutyric acid receptor subunit gamma-1; GABA(A) receptor subunit gamma-1; Precursor;)
  genome : 46,037,786 - 46,126,098 (88,313)
  query : 1 - 6,785 (6,785/6,785)
  9 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004187)

HIX0004187
HIT000214920 ( NM_173536 )
  (Gamma-aminobutyric acid receptor subunit gamma-1; GABA(A) receptor subunit gamma-1; Precursor;)
  genome : 46,037,786 - 46,126,082 (88,297)
  query : 1 - 6,769 (6,769/6,769)
  9 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 32
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004187)

HIX0004187
HIT000044673 ( AK124800 )
  (Hypothetical short protein.)
  genome : 46,037,789 - 46,039,636 (1,848)
  query : 1 - 1,848 (1,848/1,848)
  1 exon
  identity = 0.999
  3'(0.999)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 18, cyto 9, extr_plas 9
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004187)

HIX0031557
HIT000066971 ( AF086092 )
  Representative transcript
  (Conserved hypothetical protein.)
  genome : 46,245,565 - 46,246,232 (668)
  query : 1 - 668 (668/677)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031557)

HIX0031557
HIT000681781 ( ENST00000568817 )
  (Conserved hypothetical protein.)
  genome : 46,245,565 - 46,246,232 (668)
  query : 1 - 668 (668/668)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0031557)

HIX0004189
HIT000610614 ( ENST00000510861 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,250,444 - 46,477,247 (226,804)
  query : 1 - 3,411 (3,411/3,411)
  10 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 15, pero 12, E.R. 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000613612 ( ENST00000514090 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,250,461 - 46,391,398 (140,938)
  query : 1 - 3,401 (3,401/3,401)
  10 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 15, pero 12, E.R. 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000362898 ( ENST00000381620 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,251,360 - 46,391,945 (140,586)
  query : 1 - 2,525 (2,525/2,525)
  10 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 15, pero 12, E.R. 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000197819 ( NM_000807 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,251,583 - 46,392,056 (140,474)
  query : 1 - 2,413 (2,413/2,426)
  10 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 15, pero 12, E.R. 4
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000485964 ( NM_001114175 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,251,583 - 46,391,396 (139,814)
  query : 1 - 2,771 (2,771/2,784)
  9 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 15, pero 12, E.R. 4
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000639057 ( ENST00000540012 )
  (Gamma-aminobutyric acid receptor subunit alpha-1; GABA(A) receptor subunit alpha-1; Precursor;)
  genome : 46,251,584 - 46,391,805 (140,222)
  query : 1 - 2,273 (2,273/2,273)
  10 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    mito 10.5, cyto_mito 8, extr_plas 6, plas 5.5,
    extr 5.5, cyto 4.5, nucl 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000045052 ( AK125179 )
  Representative transcript
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,251,584 - 46,391,396 (139,813)
  query : 6 - 2,775 (2,770/2,775)
  9 exons
  identity = 1.000
  3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000)5'
  coverage = 0.998
  InterPro :
    IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
    IPR005432 : Gamma-aminobutyric-acid A receptor, alpha 2 subunit
    IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
    IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
    IPR006201 : Neurotransmitter-gated ion-channel
    IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
    IPR018000 : Neurotransmitter-gated ion-channel, conserved site
  GO :
    0004890 : Molecular Function : GABA-A receptor activity
    0005216 : Molecular Function : ion channel activity
    0005230 : Molecular Function : extracellular ligand-gated ion channel activity
    0006810 : Biological Process : transport
    0006811 : Biological Process : ion transport
    0006821 : Biological Process : chloride transport
    0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
    0016020 : Cellular Component : membrane
    0016021 : Cellular Component : integral component of membrane
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 15, pero 12, E.R. 4
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)
  Ortholog candidate  ( -> Evola )
    Mus sp. (Mouse) : AK048165
    Macaca sp. (Macaque) : AY394494
    Oryzias sp. (Medaka) : ENSORLT00000011900
    Pongo sp. (Orangutan) : ENSPPYT00000017096
    Tetraodon sp. (Tetraodon) : GSTENT00007052001
    Takifugu sp. (Fugu) : SINFRUT00000147113
    Bos sp. (Cow) : X12361
    Gallus sp. (Chicken) : XM_001233849
    Monodelphis sp. (Opossum) : XM_001372420
    Equus sp. (Horse) : XM_001496096
    Rattus sp. (Rat) : XM_223378
    Pan sp. (Chimpanzee) : XM_517321
    Danio sp. (Zebrafish) : XM_678764
    Canis sp. (Dog) : XM_853830

HIX0004189
HIT000310489 ( ENST00000356504 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,251,584 - 46,391,396 (139,813)
  query : 1 - 2,770 (2,770/2,770)
  9 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 15, pero 12, E.R. 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000607088 ( ENST00000507069 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,252,306 - 46,390,730 (138,425)
  query : 1 - 1,562 (1,562/1,562)
  10 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    pero 13, plas 7, extr 5, E.R. 4.5, E.R._mito 4.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000610044 ( ENST00000510233 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,252,306 - 46,390,730 (138,425)
  query : 1 - 1,155 (1,155/1,155)
  7 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 22, E.R. 4, pero 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000612609 ( ENST00000513005 )
  (Gamma-aminobutyric acid receptor subunit alpha-1; GABA(A) receptor subunit alpha-1; Precursor;)
  genome : 46,252,306 - 46,390,730 (138,425)
  query : 1 - 1,017 (1,017/1,017)
  6 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 25, cyto_nucl 14.5, mito 5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000614539 ( ENST00000515082 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,262,789 - 46,392,421 (129,633)
  query : 1 - 2,366 (2,366/2,366)
  9 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    pero 13, plas 7, extr 5, E.R._mito 5, E.R. 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000613749 ( ENST00000514236 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,304,524 - 46,305,632 (1,109)
  query : 8 - 605 (598/605)
  2 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 0.988
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 12, cyto_nucl 8, cyto 7, nucl 5, mito 4, pero 4,
    mito_pero 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000613708 ( ENST00000514193 )
  (Gamma-aminobutyric acid receptor subunit alpha-1; GABA(A) receptor subunit alpha-1; Precursor;)
  genome : 46,312,190 - 46,391,805 (79,616)
  query : 1 - 555 (555/574)
  5 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000)5'
  coverage = 0.967
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 25, cyto_nucl 14.5, mito 5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000604071 ( ENST00000503806 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,314,534 - 46,391,380 (76,847)
  query : 1 - 596 (596/596)
  5 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 23, E.R. 3, pero 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000606992 ( ENST00000506961 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,314,577 - 46,391,399 (76,823)
  query : 1 - 582 (582/582)
  5 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 24, E.R. 3, pero 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000607450 ( ENST00000507460 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,365,732 - 46,391,567 (25,836)
  query : 1 - 5,812 (5,812/5,812)
  4 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 23, pero 5, lyso 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000425994 ( AK307128 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,370,170 - 46,391,567 (21,398)
  query : 1 - 1,374 (1,374/1,374)
  4 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR006201 : Neurotransmitter-gated ion-channel
  GO :
    0006811 : Biological Process : ion transport
    0016021 : Cellular Component : integral component of membrane
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 23, pero 5, lyso 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0004189
HIT000609565 ( ENST00000509716 )
  (Gamma-aminobutyric acid receptor subunit alpha-2; GABA(A) receptor subunit alpha-2; Precursor;)
  genome : 46,388,091 - 46,390,730 (2,640)
  query : 1 - 363 (363/363)
  3 exons
  identity = 1.000
  3'(1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 23, cyto 4.5, cyto_nucl 4, nucl 2.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0004189)

HIX0205373
HIT000602810 ( ENST00000502455 )
  (Non-protein coding transcript.)
  genome : 46,392,272 - 46,435,205 (42,934)
  query : 1 - 549 (549/549)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0205373)

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )