bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0205878
HIT000611720 (
ENST00000512036
)
(Hypothetical short protein.)
genome : 180,310,288 - 180,386,459 (76,172)
query : 1 - 539 (539/539)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205878)
HIX0205266
HIT000462690_06
(
DQ596159
)
Representative transcript
(Non-protein coding transcript.)
genome : 180,324,742 - 180,324,771 (30)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
5'(0.967)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205266)
HIX0164065
HIT000466719_04
(
DQ600188
)
Representative transcript
(Non-protein coding transcript.)
genome : 180,326,873 - 180,326,901 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0164065)
HIX0205267
HIT000462690_07
(
DQ596159
)
Representative transcript
(Non-protein coding transcript.)
genome : 180,330,151 - 180,330,180 (30)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
5'(0.967)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205267)
HIX0205268
HIT000462690_08
(
DQ596159
)
Representative transcript
(Non-protein coding transcript.)
genome : 180,648,910 - 180,648,939 (30)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
5'(0.967)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205268)
HIX0205856
HIT000611314 (
ENST00000511607
)
(Conserved hypothetical protein.)
genome : 180,778,006 - 180,778,734 (729)
query : 1 - 420 (420/420)
2 exons
identity = 0.986
5'(1.000;0.965)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205856)
HIX0019212
HIT000011232
(
AK054618
)
Representative transcript
(DDE superfamily endonuclease, CENP-B-like protein.)
genome : 181,197,118 - 181,199,840 (2,723)
query : 1 - 2,723 (2,723/2,723)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
InterPro :
IPR004875 : DDE superfamily endonuclease, CENP-B-like
GO :
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 11.5, nucl 9.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019212)
HIX0205678
HIT000608083 (
ENST00000508134
)
(NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit family protein.)
genome : 181,494,617 - 181,495,180 (564)
query : 1 - 564 (564/564)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17, mito 10, plas 2, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205678)
AC018710.4
180000001-180061262 F -
NCBI
AC097479.3
180061263-180197110 F +
NCBI
AC021011.5
180197111-180239068 F +
NCBI
AC020551.5
180239069-180359106 F +
NCBI
AC082649.4
180359107-180528253 F +
NCBI
AC092537.4
180528254-180620698 F +
NCBI
AC119070.3
180620699-180653159 F +
NCBI
AC021193.7
180653160-180869144 F +
NCBI
AC108169.5
180869145-180978950 F +
NCBI
AC096747.3
180978951-181183739 F +
NCBI
AC104826.5
181183740-181320343 F +
NCBI
AC104660.4
181320344-181449619 F +
NCBI
AC096590.4
181449620-181600000 F +
NCBI