bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0215666
HIT000593289 (
ENST00000489694
)
(Zinc finger, nuclear hormone receptor-type domain containing protein.)
genome : 25,470,192 - 25,504,036 (33,845)
query : 1 - 574 (574/574)
3 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215666)
HIX0215413
HIT000099191
(
BC050415
)
Representative transcript
(Steroid hormone receptor family protein.)
genome : 25,542,672 - 25,639,421 (96,750)
query : 1 - 2,353 (2,353/2,369)
6 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 20, nucl 3, cyto 3, mito 3, E.R. 3, cyto_nucl 3,
E.R._mito 3, cyto_mito 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215413)
HIX0215413
HIT000268494
(
CR536558
)
(Steroid hormone receptor family protein.)
genome : 25,542,703 - 25,638,107 (95,405)
query : 1 - 1,011 (1,011/1,011)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;0.995;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215413)
HIX0215413
HIT000653616
(
HQ692863
)
(Steroid hormone receptor family protein.)
genome : 25,542,703 - 25,638,107 (95,405)
query : 1 - 1,011 (1,011/1,011)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 22, cyto 4, nucl 2, mito 2, E.R. 2, E.R._mito 2,
cyto_pero 2, cyto_golg 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215413)
HIX0163938
HIT000556834 (
ENST00000458900
)
(Non-protein coding transcript.)
genome : 25,597,034 - 25,597,097 (64)
query : 1 - 64 (64/64)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163938)
HIX0030807
HIT000198074 (
NM_001068
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,396 - 25,705,863 (66,468)
query : 1 - 5,343 (5,343/5,360)
36 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 14.5, cyto 10.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000090478
(
BC021863
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,475 - 25,657,007 (17,533)
query : 1 - 1,783 (1,783/1,800)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.999
EC number :
EC 5.99.1.3
InterPro :
IPR002205 : DNA topoisomerase, type IIA, subunit A/C-terminal
IPR012542 : DTHCT
IPR013757 : Type IIA DNA topoisomerase subunit A, alpha-helical domain
IPR013760 : DNA topoisomerase, type IIA-like domain
IPR028467 : DNA topoisomerase II-beta
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006265 : Biological Process : DNA topological change
0008301 : Molecular Function : DNA binding, bending
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 16, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000326537
(
Z15115
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,475 - 25,670,446 (30,972)
query : 13 - 3,419 (3,407/3,432)
22 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.993
EC number :
EC 5.99.1.3
InterPro :
IPR001154 : DNA topoisomerase II, eukaryotic-type
IPR002205 : DNA topoisomerase, type IIA, subunit A/C-terminal
IPR012542 : DTHCT
IPR013757 : Type IIA DNA topoisomerase subunit A, alpha-helical domain
IPR013758 : DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
IPR013760 : DNA topoisomerase, type IIA-like domain
IPR024946 : Arginine repressor C-terminal-like domain
IPR028467 : DNA topoisomerase II-beta
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006259 : Biological Process : DNA metabolic process
0006265 : Biological Process : DNA topological change
0008301 : Molecular Function : DNA binding, bending
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 15.5, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000220328
(
U54831
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,475 - 25,651,161 (11,687)
query : 1 - 1,377 (1,377/1,388)
8 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
EC number :
EC 5.99.1.3
InterPro :
IPR012542 : DTHCT
IPR028467 : DNA topoisomerase II-beta
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006265 : Biological Process : DNA topological change
0008301 : Molecular Function : DNA binding, bending
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000491795
(
AK297171
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,475 - 25,660,341 (20,867)
query : 12 - 2,061 (2,050/2,061)
12 exons
identity = 1.000
3'(1.000;0.989;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.995
EC number :
EC 5.99.1.3
InterPro :
IPR002205 : DNA topoisomerase, type IIA, subunit A/C-terminal
IPR013757 : Type IIA DNA topoisomerase subunit A, alpha-helical domain
IPR013760 : DNA topoisomerase, type IIA-like domain
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0006265 : Biological Process : DNA topological change
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14.5, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000641565 (
ENST00000542520
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,475 - 25,660,341 (20,867)
query : 12 - 2,061 (2,050/2,061)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.995
EC number :
EC 5.99.1.3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14.5, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000511905 (
ENST00000413971
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,475 - 25,660,340 (20,866)
query : 1 - 2,049 (2,049/2,049)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14, nucl 4.5, extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000533640 (
ENST00000435706
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,477 - 25,705,990 (66,514)
query : 1 - 5,389 (5,389/5,389)
36 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 14.5, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000328814
(
AB208879
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,483 - 25,679,814 (40,332)
query : 2 - 4,814 (4,813/4,814)
32 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.962)5'
coverage = 1.000
EC number :
EC 5.99.1.3
InterPro :
IPR001154 : DNA topoisomerase II, eukaryotic-type
IPR001241 : DNA topoisomerase, type IIA
IPR002205 : DNA topoisomerase, type IIA, subunit A/C-terminal
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR006171 : Toprim domain
IPR012542 : DTHCT
IPR013506 : DNA topoisomerase, type IIA, subunit B, domain 2
IPR013757 : Type IIA DNA topoisomerase subunit A, alpha-helical domain
IPR013758 : DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
IPR013759 : DNA topoisomerase, type IIA, central domain
IPR013760 : DNA topoisomerase, type IIA-like domain
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR018522 : DNA topoisomerase, type IIA, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
IPR024946 : Arginine repressor C-terminal-like domain
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006259 : Biological Process : DNA metabolic process
0006265 : Biological Process : DNA topological change
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000109271 (
ENST00000264331
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,490 - 25,705,788 (66,299)
query : 1 - 5,189 (5,189/5,189)
36 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 14.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000500105
(
AK316492
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,592 - 25,657,432 (17,841)
query : 1 - 1,897 (1,897/1,897)
12 exons
identity = 0.999
3'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
InterPro :
IPR002205 : DNA topoisomerase, type IIA, subunit A/C-terminal
IPR012542 : DTHCT
IPR013757 : Type IIA DNA topoisomerase subunit A, alpha-helical domain
IPR013760 : DNA topoisomerase, type IIA-like domain
IPR028467 : DNA topoisomerase II-beta
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006265 : Biological Process : DNA topological change
0008301 : Molecular Function : DNA binding, bending
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000639244 (
ENST00000540199
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,592 - 25,657,432 (17,841)
query : 1 - 1,897 (1,897/1,897)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000322912
(
X68060
)
Representative transcript
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,639,798 - 25,705,788 (65,991)
query : 1 - 4,866 (4,866/4,866)
36 exons
identity = 1.000
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
InterPro :
IPR001154 : DNA topoisomerase II, eukaryotic-type
IPR001241 : DNA topoisomerase, type IIA
IPR002205 : DNA topoisomerase, type IIA, subunit A/C-terminal
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR006171 : Toprim domain
IPR012542 : DTHCT
IPR013506 : DNA topoisomerase, type IIA, subunit B, domain 2
IPR013757 : Type IIA DNA topoisomerase subunit A, alpha-helical domain
IPR013758 : DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
IPR013759 : DNA topoisomerase, type IIA, central domain
IPR013760 : DNA topoisomerase, type IIA-like domain
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR018522 : DNA topoisomerase, type IIA, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
IPR024946 : Arginine repressor C-terminal-like domain
IPR028467 : DNA topoisomerase II-beta
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006259 : Biological Process : DNA metabolic process
0006265 : Biological Process : DNA topological change
0008301 : Molecular Function : DNA binding, bending
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 14.5, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AB007446
Macaca
sp. (Macaque) : AB173990
Mus
sp. (Mouse) : BC041106
Danio
sp. (Zebrafish) : BC133962
Pongo
sp. (Orangutan) : CR857392
Bos
sp. (Cow) : ENSBTAT00000006030
Oryzias
sp. (Medaka) : ENSORLT00000010829
Tetraodon
sp. (Tetraodon) : GSTENT00033707001
Takifugu
sp. (Fugu) : SINFRUT00000139068
Monodelphis
sp. (Opossum) : XM_001380819
Equus
sp. (Horse) : XM_001492115
Pan
sp. (Chimpanzee) : XM_516332
Canis
sp. (Dog) : XM_534241
HIX0030807
HIT000321848
(
X53662
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,651,162 - 25,660,277 (9,116)
query : 1 - 702 (702/702)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
InterPro :
IPR002205 : DNA topoisomerase, type IIA, subunit A/C-terminal
IPR013757 : Type IIA DNA topoisomerase subunit A, alpha-helical domain
IPR013760 : DNA topoisomerase, type IIA-like domain
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0006265 : Biological Process : DNA topological change
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 14, cyto 9.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000491134
(
AK296510
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,654,015 - 25,706,398 (52,384)
query : 1 - 3,892 (3,892/3,892)
28 exons
identity = 0.996
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.992;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;1.000;0.931)5'
coverage = 1.000
EC number :
EC 5.99.1.3
InterPro :
IPR001154 : DNA topoisomerase II, eukaryotic-type
IPR001241 : DNA topoisomerase, type IIA
IPR002205 : DNA topoisomerase, type IIA, subunit A/C-terminal
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR006171 : Toprim domain
IPR013506 : DNA topoisomerase, type IIA, subunit B, domain 2
IPR013757 : Type IIA DNA topoisomerase subunit A, alpha-helical domain
IPR013758 : DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
IPR013759 : DNA topoisomerase, type IIA, central domain
IPR013760 : DNA topoisomerase, type IIA-like domain
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR018522 : DNA topoisomerase, type IIA, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
IPR024946 : Arginine repressor C-terminal-like domain
IPR028467 : DNA topoisomerase II-beta
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0006259 : Biological Process : DNA metabolic process
0006265 : Biological Process : DNA topological change
0008301 : Molecular Function : DNA binding, bending
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 15, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000579947 (
ENST00000475717
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,654,062 - 25,657,432 (3,371)
query : 1 - 540 (540/540)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, extr 7, nucl 4, extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000426316
(
AK307450
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,656,964 - 25,706,398 (49,435)
query : 1 - 3,525 (3,525/3,525)
27 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.990;
1.000;1.000;1.000;0.994;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
InterPro :
IPR001154 : DNA topoisomerase II, eukaryotic-type
IPR001241 : DNA topoisomerase, type IIA
IPR002205 : DNA topoisomerase, type IIA, subunit A/C-terminal
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR006171 : Toprim domain
IPR013506 : DNA topoisomerase, type IIA, subunit B, domain 2
IPR013757 : Type IIA DNA topoisomerase subunit A, alpha-helical domain
IPR013758 : DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
IPR013759 : DNA topoisomerase, type IIA, central domain
IPR013760 : DNA topoisomerase, type IIA-like domain
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR018522 : DNA topoisomerase, type IIA, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
IPR024946 : Arginine repressor C-terminal-like domain
IPR028467 : DNA topoisomerase II-beta
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0006259 : Biological Process : DNA metabolic process
0006265 : Biological Process : DNA topological change
0008301 : Molecular Function : DNA binding, bending
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 14.5, nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000522159 (
ENST00000424225
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,656,964 - 25,706,398 (49,435)
query : 1 - 3,525 (3,525/3,525)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 14.5, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000195167
(
M27504
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,660,275 - 25,679,752 (19,478)
query : 1 - 2,685 (2,685/2,685)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.990)5'
coverage = 1.000
EC number :
EC 5.99.1.3
InterPro :
IPR001154 : DNA topoisomerase II, eukaryotic-type
IPR001241 : DNA topoisomerase, type IIA
IPR002205 : DNA topoisomerase, type IIA, subunit A/C-terminal
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR006171 : Toprim domain
IPR013506 : DNA topoisomerase, type IIA, subunit B, domain 2
IPR013758 : DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
IPR013759 : DNA topoisomerase, type IIA, central domain
IPR013760 : DNA topoisomerase, type IIA-like domain
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR018522 : DNA topoisomerase, type IIA, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
IPR024946 : Arginine repressor C-terminal-like domain
IPR028467 : DNA topoisomerase II-beta
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0006259 : Biological Process : DNA metabolic process
0006265 : Biological Process : DNA topological change
0008301 : Molecular Function : DNA binding, bending
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14.5, nucl 9.5, cyto_mito 9.5,
cyto_pero 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000574620 (
ENST00000470132
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,665,843 - 25,666,529 (687)
query : 1 - 451 (451/451)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto_nucl 11.5, cyto 10, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000595033 (
ENST00000491510
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,668,548 - 25,671,646 (3,099)
query : 1 - 584 (584/584)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000326535
(
Z15111
)
(DNA topoisomerase 2-beta; EC=5.99.1.3; DNA topoisomerase II, beta isozyme;)
genome : 25,673,988 - 25,705,788 (31,801)
query : 1 - 1,200 (1,200/1,200)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.99.1.3
InterPro :
IPR001241 : DNA topoisomerase, type IIA
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR013506 : DNA topoisomerase, type IIA, subunit B, domain 2
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
IPR028467 : DNA topoisomerase II-beta
GO :
0003677 : Molecular Function : DNA binding
0003918 : Molecular Function : DNA topoisomerase type II (ATP-hydrolyzing) activity
0005524 : Molecular Function : ATP binding
0006265 : Biological Process : DNA topological change
0008301 : Molecular Function : DNA binding, bending
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000695293 (
ENST00000583412
)
(Non-protein coding transcript.)
genome : 25,706,364 - 25,706,430 (67)
query : 1 - 67 (67/67)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0030807
HIT000725707 (
NR_039644
)
(Non-protein coding transcript.)
genome : 25,706,364 - 25,706,430 (67)
query : 1 - 67 (67/67)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030807)
HIX0163678
HIT000523330 (
ENST00000425396
)
(Conserved hypothetical protein.)
genome : 25,728,387 - 25,728,614 (228)
query : 1 - 228 (228/228)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163678)
HIX0003131
HIT000027660
(
AL832748
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,435 - 25,772,041 (11,607)
query : 1 - 2,286 (2,286/2,352)
3 exons
identity = 0.998
3'(0.997;1.000;0.999)5'
coverage = 1.000
EC number :
EC 3.5.1.52
InterPro :
IPR006588 : Peptide N glycanase, PAW domain
IPR008979 : Galactose-binding domain-like
GO :
0005737 : Cellular Component : cytoplasm
0006516 : Biological Process : glycoprotein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, extr 11, cyto_nucl 9.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000561287 (
NM_001145294
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 3.)
genome : 25,760,435 - 25,831,530 (71,096)
query : 1 - 2,529 (2,529/2,539)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 13, nucl 10, mito 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000207117 (
NM_018297
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,435 - 25,824,989 (64,555)
query : 1 - 2,589 (2,589/2,599)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 14, cyto 13, extr 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000561286 (
NM_001145293
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 2.)
genome : 25,760,435 - 25,824,989 (64,555)
query : 1 - 2,535 (2,535/2,545)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 13, cyto 13, extr 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000561288 (
NM_001145295
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,435 - 25,824,989 (64,555)
query : 1 - 2,411 (2,411/2,421)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, plas 4, nucl 2.5, E.R. 2,
pero 2, extr_plas 2, cysk_plas 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000592880 (
ENST00000489271
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,435 - 25,772,041 (11,607)
query : 1 - 2,288 (2,288/2,288)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, extr 11, cyto_nucl 9.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000526191 (
ENST00000428257
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 2.)
genome : 25,760,436 - 25,824,989 (64,554)
query : 1 - 2,534 (2,534/2,534)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 13, cyto 13, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000111988 (
ENST00000280700
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,604 - 25,825,042 (64,439)
query : 1 - 2,473 (2,473/2,473)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 14, cyto 13, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000033083
(
BC007226
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,762 - 25,824,922 (64,161)
query : 1 - 2,195 (2,195/2,213)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
InterPro :
IPR002931 : Transglutaminase-like
IPR006567 : PUG domain
IPR006588 : Peptide N glycanase, PAW domain
IPR008979 : Galactose-binding domain-like
IPR018997 : PUB domain
GO :
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0006516 : Biological Process : glycoprotein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 14, cyto 13, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000050675
(
BC017220
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,769 - 25,824,916 (64,148)
query : 1 - 2,004 (2,004/2,021)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.991;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
InterPro :
IPR002931 : Transglutaminase-like
IPR006588 : Peptide N glycanase, PAW domain
IPR008979 : Galactose-binding domain-like
GO :
0005737 : Cellular Component : cytoplasm
0006516 : Biological Process : glycoprotein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9, nucl 5.5, mito 5, mito_pero 5,
plas 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000429339
(
AK310473
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 3.)
genome : 25,760,761 - 25,824,905 (64,145)
query : 1 - 3,058 (3,058/3,058)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.991;1.000;1.000;
1.000;1.000;0.991;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
InterPro :
IPR002931 : Transglutaminase-like
IPR006567 : PUG domain
IPR018997 : PUB domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16.5, cyto 10, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000596766 (
ENST00000493324
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 2.)
genome : 25,760,761 - 25,824,905 (64,145)
query : 1 - 3,058 (3,058/3,058)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16.5, cyto 10, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000479976 (
ENST00000396649
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,762 - 25,824,929 (64,168)
query : 1 - 2,024 (2,024/2,024)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, plas 4, nucl 2.5, E.R. 2,
pero 2, extr_plas 2, cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000571840 (
ENST00000467224
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,766 - 25,775,475 (14,710)
query : 1 - 722 (722/722)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto_nucl 4.5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000085937
(
BC000963
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 2.)
genome : 25,760,767 - 25,824,872 (64,106)
query : 1 - 2,086 (2,086/2,086)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
InterPro :
IPR002931 : Transglutaminase-like
IPR006588 : Peptide N glycanase, PAW domain
IPR008979 : Galactose-binding domain-like
GO :
0005737 : Cellular Component : cytoplasm
0006516 : Biological Process : glycoprotein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, nucl 7, mito 7, cyto_golg 7, mito_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000118071 (
ENST00000308710
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 2.)
genome : 25,760,767 - 25,824,872 (64,106)
query : 1 - 2,086 (2,086/2,086)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, nucl 7, mito 7, cyto_golg 7, mito_nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000111987 (
ENST00000280699
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,770 - 25,824,855 (64,086)
query : 1 - 1,897 (1,897/1,897)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14, nucl 5.5, mito 4, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000004341
(
AK001867
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,770 - 25,820,156 (59,387)
query : 87 - 1,855 (1,769/1,855)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;1.000)5'
coverage = 0.954
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14, nucl 5.5, mito 4, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000520658 (
ENST00000422724
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,770 - 25,820,164 (59,395)
query : 1 - 1,777 (1,777/1,777)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14, nucl 5.5, mito 4, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000329484
(
AB209549
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,770 - 25,777,837 (17,068)
query : 1 - 3,196 (3,196/3,196)
4 exons
identity = 0.995
3'(1.000;1.000;1.000;0.994)5'
coverage = 1.000
EC number :
EC 3.5.1.52
InterPro :
IPR018325 : Rad4/PNGase transglutaminase-like fold
GO :
0003684 : Molecular Function : damaged DNA binding
0005634 : Cellular Component : nucleus
0006289 : Biological Process : nucleotide-excision repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 7, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000600034 (
ENST00000496726
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,770 - 25,777,837 (17,068)
query : 1 - 3,196 (3,196/3,196)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 7, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000075030
(
AF250924
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,775 - 25,824,922 (64,148)
query : 1 - 2,182 (2,182/2,182)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
InterPro :
IPR002931 : Transglutaminase-like
IPR006567 : PUG domain
IPR006588 : Peptide N glycanase, PAW domain
IPR008979 : Galactose-binding domain-like
IPR018997 : PUB domain
GO :
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0006516 : Biological Process : glycoprotein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 14, cyto 13, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000242351
(
AB114414
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,877 - 25,761,679 (803)
query : 101 - 525 (425/525)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
InterPro :
IPR006588 : Peptide N glycanase, PAW domain
IPR008979 : Galactose-binding domain-like
GO :
0005737 : Cellular Component : cytoplasm
0006516 : Biological Process : glycoprotein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 14.5, nucl 11.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000242352
(
AB114415
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,760,877 - 25,761,122 (246)
query : 102 - 347 (246/347)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
InterPro :
IPR008979 : Galactose-binding domain-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 6, cyto_pero 3.83333, cyto_nucl 3.5,
cyto 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000515808 (
ENST00000417874
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 3.)
genome : 25,760,902 - 25,831,530 (70,629)
query : 1 - 2,062 (2,062/2,062)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 13, nucl 10, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000490671
(
AK296047
)
Representative transcript
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase isoform 3.)
genome : 25,760,902 - 25,831,497 (70,596)
query : 1 - 2,029 (2,029/2,029)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
InterPro :
IPR002931 : Transglutaminase-like
IPR006588 : Peptide N glycanase, PAW domain
IPR008979 : Galactose-binding domain-like
IPR018997 : PUB domain
GO :
0005737 : Cellular Component : cytoplasm
0006516 : Biological Process : glycoprotein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 13, nucl 10, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169230
Gallus
sp. (Chicken) : AJ720411
Mus
sp. (Mouse) : AK028248
Rattus
sp. (Rat) : BC083837
Danio
sp. (Zebrafish) : BC095313
Tetraodon
sp. (Tetraodon) : CR687624
Equus
sp. (Horse) : ENSECAT00000024825
Oryzias
sp. (Medaka) : ENSORLT00000010848
Pongo
sp. (Orangutan) : ENSPPYT00000016352
Takifugu
sp. (Fugu) : SINFRUT00000139051
Monodelphis
sp. (Opossum) : XM_001380828
Pan
sp. (Chimpanzee) : XM_516333
Canis
sp. (Dog) : XM_534241
Bos
sp. (Cow) : XM_613238
HIX0120023
HIT000556476 (
ENST00000458542
)
(Ribosomal protein L32e family protein.)
genome : 25,790,979 - 25,791,387 (409)
query : 1 - 409 (409/409)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 11, mito 6, extr_plas 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0120023)
HIX0003131
HIT000524975 (
ENST00000427041
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,792,672 - 25,824,363 (31,692)
query : 1 - 579 (579/579)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 15, nucl 9, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0120022
HIT000479973 (
ENST00000396646
)
(Transcription initiation factor TAFII31 family protein.)
genome : 25,796,416 - 25,797,161 (746)
query : 1 - 746 (746/746)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 10.5, extr 8, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0120022)
HIX0003131
HIT000566373 (
ENST00000461491
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,805,620 - 25,825,647 (20,028)
query : 1 - 552 (552/552)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 10.5, extr 8, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000578892 (
ENST00000474611
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,819,192 - 25,824,973 (5,782)
query : 1 - 478 (478/478)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 12, cyto 12, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000583074 (
ENST00000478991
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,819,753 - 25,824,905 (5,153)
query : 1 - 582 (582/582)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13, cyto 9.5, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000568399 (
ENST00000463611
)
(Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase; PNGase; hPNGase; EC=3.5.1.52; N-glycanase 1; Peptide:N-glycanase;)
genome : 25,820,132 - 25,824,905 (4,774)
query : 1 - 570 (570/570)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.5.1.52
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 12, cyto_nucl 10.5, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003131
HIT000005745
(
AK022471
)
(Conserved hypothetical protein.)
genome : 25,822,484 - 25,824,889 (2,406)
query : 1 - 2,406 (2,406/2,406)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 14.6667, cyto 5, mito 5,
cyto_pero 4.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003131)
HIX0003132
HIT000565135 (
ENST00000460195
)
(Non-protein coding transcript.)
genome : 25,824,408 - 25,825,600 (1,193)
query : 1 - 410 (410/410)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000569422 (
ENST00000464688
)
(Hypothetical short protein.)
genome : 25,824,530 - 25,831,477 (6,948)
query : 1 - 462 (462/462)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto_nucl 14, cyto 11, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000550032 (
ENST00000452098
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; EC=2.3.1.41; Beta-ketoacyl-ACP synthase; Precursor;)
genome : 25,824,564 - 25,833,171 (8,608)
query : 1 - 899 (899/899)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, mito_pero 13.8333, E.R._mito 13.3333, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000206755 (
NM_017897
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; EC=2.3.1.41; Beta-ketoacyl-ACP synthase; Precursor;)
genome : 25,831,563 - 25,836,025 (4,463)
query : 1 - 1,527 (1,527/1,537)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22.5, E.R._mito 12, cyto 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000561344 (
NM_001145391
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial isoform 2 precursor.)
genome : 25,831,563 - 25,836,025 (4,463)
query : 1 - 1,278 (1,278/1,288)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24.5, E.R._mito 13, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000563112 (
NR_026937
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; EC=2.3.1.41; Beta-ketoacyl-ACP synthase; Precursor;)
genome : 25,831,563 - 25,836,025 (4,463)
query : 1 - 1,073 (1,073/1,083)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 26, extr 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000003086
(
AK000611
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; EC=2.3.1.41; Beta-ketoacyl-ACP synthase; Precursor;)
genome : 25,831,571 - 25,836,025 (4,455)
query : 1 - 1,519 (1,519/1,544)
3 exons
identity = 0.999
5'(0.985;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22.5, E.R._mito 12, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000111989 (
ENST00000280701
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; EC=2.3.1.41; Beta-ketoacyl-ACP synthase; Precursor;)
genome : 25,831,571 - 25,836,025 (4,455)
query : 1 - 1,519 (1,519/1,519)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22.5, E.R._mito 12, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000499445
(
AK304821
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; EC=2.3.1.41; Beta-ketoacyl-ACP synthase; Precursor;)
genome : 25,831,581 - 25,836,014 (4,434)
query : 1 - 1,044 (1,044/1,044)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
InterPro :
IPR014030 : Beta-ketoacyl synthase, N-terminal
IPR016038 : Thiolase-like, subgroup
IPR016039 : Thiolase-like
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 26, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000546111 (
ENST00000448177
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; EC=2.3.1.41; Beta-ketoacyl-ACP synthase; Precursor;)
genome : 25,831,581 - 25,836,014 (4,434)
query : 1 - 1,044 (1,044/1,044)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 26, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000384390
(
AK225260
)
Representative transcript
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial isoform 2 precursor.)
genome : 25,831,585 - 25,836,025 (4,441)
query : 1 - 1,256 (1,256/1,273)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.998)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
InterPro :
IPR014031 : Beta-ketoacyl synthase, C-terminal
IPR016038 : Thiolase-like, subgroup
IPR016039 : Thiolase-like
IPR018201 : Beta-ketoacyl synthase, active site
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24.5, E.R._mito 13, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK016905
Bos
sp. (Cow) : BC120268
Oryzias
sp. (Medaka) : ENSORLT00000010857
Pongo
sp. (Orangutan) : ENSPPYT00000016351
Tetraodon
sp. (Tetraodon) : GSTENT00033705001
Takifugu
sp. (Fugu) : SINFRUT00000139048
Macaca
sp. (Macaque) : XM_001091681
Pan
sp. (Chimpanzee) : XM_001164714
Monodelphis
sp. (Opossum) : XM_001380834
Equus
sp. (Horse) : XM_001493868
Canis
sp. (Dog) : XM_534240
HIX0003132
HIT000518107 (
ENST00000420173
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial isoform 2 precursor.)
genome : 25,831,585 - 25,836,025 (4,441)
query : 1 - 1,256 (1,256/1,256)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24.5, E.R._mito 13, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000033673
(
BC008202
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; EC=2.3.1.41; Beta-ketoacyl-ACP synthase; Precursor;)
genome : 25,831,594 - 25,836,025 (4,432)
query : 1 - 1,496 (1,496/1,512)
3 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
InterPro :
IPR014030 : Beta-ketoacyl synthase, N-terminal
IPR014031 : Beta-ketoacyl synthase, C-terminal
IPR016038 : Thiolase-like, subgroup
IPR016039 : Thiolase-like
IPR017568 : 3-oxoacyl-[acyl-carrier-protein] synthase 2
IPR018201 : Beta-ketoacyl synthase, active site
GO :
0003824 : Molecular Function : catalytic activity
0006633 : Biological Process : fatty acid biosynthetic process
0008152 : Biological Process : metabolic process
0016747 : Molecular Function : transferase activity, transferring acyl groups other than amino-acyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22.5, E.R._mito 12, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000547742 (
ENST00000449808
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; EC=2.3.1.41; Beta-ketoacyl-ACP synthase; Precursor;)
genome : 25,831,971 - 25,833,332 (1,362)
query : 1 - 735 (735/735)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 26, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0003132
HIT000526200 (
ENST00000428266
)
(3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; EC=2.3.1.41; Beta-ketoacyl-ACP synthase; Precursor;)
genome : 25,832,277 - 25,833,205 (929)
query : 1 - 756 (756/756)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.3.1.41
KEGG pathway :
00061 : Fatty acid biosynthesis (15)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, mito_pero 13.8333, E.R._mito 12.8333, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003132)
HIX0031067
HIT000093071
(
BC033370
)
Representative transcript
(Conserved hypothetical protein.)
genome : 25,900,023 - 25,915,186 (15,164)
query : 4 - 933 (930/949)
8 exons
identity = 0.995
3'(0.985;1.000;1.000;1.000;1.000;1.000;0.994;
1.000)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031067)
HIX0031067
HIT000659196 (
NR_034055
)
(Conserved hypothetical protein.)
genome : 25,900,023 - 25,915,186 (15,164)
query : 1 - 930 (930/930)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031067)
HIX0031067
HIT000549218 (
ENST00000451284
)
(Conserved hypothetical protein.)
genome : 25,900,024 - 25,915,189 (15,166)
query : 1 - 932 (932/932)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031067)
HIX0031067
HIT000388916
(
BC126324
)
(Conserved hypothetical protein.)
genome : 25,900,099 - 25,913,868 (13,770)
query : 1 - 691 (691/691)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031067)
HIX0031067
HIT000502426
(
BC143987
)
(Conserved hypothetical protein.)
genome : 25,900,099 - 25,913,868 (13,770)
query : 1 - 768 (768/768)
7 exons
identity = 0.999
3'(1.000;1.000;0.985;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 11, cyto_mito 10, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031067)
HIX0031067
HIT000502437
(
BC143998
)
(Conserved hypothetical protein.)
genome : 25,900,099 - 25,913,868 (13,770)
query : 1 - 765 (765/765)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 11, cyto_mito 10, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031067)
HIX0031067
HIT000502438
(
BC143999
)
(Conserved hypothetical protein.)
genome : 25,900,099 - 25,913,868 (13,770)
query : 1 - 795 (795/795)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 11, cyto_mito 10, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031067)
HIX0031067
HIT000600292 (
ENST00000496997
)
(Conserved hypothetical protein.)
genome : 25,900,145 - 25,915,191 (15,047)
query : 1 - 554 (554/554)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 11, mito 9, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031067)
HIX0163736
HIT000530083 (
ENST00000432149
)
(Ribulose-phosphate 3-epimerase-like family protein.)
genome : 26,057,160 - 26,057,860 (701)
query : 1 - 701 (701/701)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12.5, extr 6, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163736)
HIX0163786
HIT000536679 (
ENST00000438745
)
(High mobility group box domain containing protein.)
genome : 26,257,813 - 26,258,368 (556)
query : 1 - 556 (556/556)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, nucl 8.5, cyto_nucl 8, cyto 6.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163786)
HIX0163859
HIT000546963 (
ENST00000449029
)
(Conserved hypothetical protein.)
genome : 26,388,172 - 26,389,129 (958)
query : 1 - 958 (958/958)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto_nucl 9.5, extr 8, cyto 7, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163859)
HIX0163770
HIT000533818 (
ENST00000435884
)
(Hypothetical short protein.)
genome : 26,660,821 - 26,664,181 (3,361)
query : 1 - 454 (454/454)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 8.5, cyto_nucl 6.5, nucl 3.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163770)
HIX0024289
HIT000262752
(
BC067784
)
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,664,297 - 26,752,262 (87,966)
query : 1 - 1,691 (1,691/1,726)
2 exons
identity = 0.999
5'(0.998;1.000)3'
coverage = 0.999
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 10, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000479968 (
ENST00000396641
)
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,664,297 - 26,752,267 (87,971)
query : 1 - 1,696 (1,696/1,696)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 10, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000078967
(
AF396933
)
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,664,300 - 26,752,264 (87,965)
query : 1 - 1,690 (1,690/1,718)
2 exons
identity = 0.997
5'(0.998;0.997)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 10, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000211546 (
NM_052953
)
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,664,300 - 26,752,264 (87,965)
query : 1 - 1,690 (1,690/1,718)
2 exons
identity = 0.997
5'(0.998;0.997)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 10, E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000512553 (
ENST00000414619
)
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,665,191 - 26,751,327 (86,137)
query : 1 - 489 (489/489)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000529974 (
ENST00000432040
)
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,665,572 - 26,751,652 (86,081)
query : 1 - 927 (927/927)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000430026
(
AK311160
)
(Conserved hypothetical protein.)
genome : 26,666,111 - 26,667,000 (890)
query : 1 - 890 (890/890)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000052440
(
BC040656
)
Representative transcript
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,666,158 - 26,752,264 (86,107)
query : 4 - 1,694 (1,691/1,709)
3 exons
identity = 0.998
5'(1.000;0.994;0.998)3'
coverage = 0.998
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 10, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK043406
Danio
sp. (Zebrafish) : BC133927
Bos
sp. (Cow) : BC146155
Gallus
sp. (Chicken) : CR386255
Monodelphis
sp. (Opossum) : ENSMODT00000034061
Oryzias
sp. (Medaka) : ENSORLT00000010864
Pongo
sp. (Orangutan) : ENSPPYT00000013340
Tetraodon
sp. (Tetraodon) : GSTENT00033704001
Takifugu
sp. (Fugu) : SINFRUT00000139047
Macaca
sp. (Macaque) : XM_001093706
Pan
sp. (Chimpanzee) : XM_001164863
Equus
sp. (Horse) : XM_001493827
Canis
sp. (Dog) : XM_542758
Rattus
sp. (Rat) : XR_008527
HIX0024289
HIT000515678 (
ENST00000417744
)
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,666,158 - 26,752,267 (86,110)
query : 1 - 1,695 (1,695/1,695)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 10, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000573959 (
ENST00000469437
)
(Conserved hypothetical protein.)
genome : 26,666,169 - 26,751,074 (84,906)
query : 1 - 905 (905/905)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000554142 (
ENST00000456208
)
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,736,046 - 26,752,267 (16,222)
query : 1 - 1,551 (1,551/1,551)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 10, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000266171
(
BC087849
)
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,736,048 - 26,752,264 (16,217)
query : 1 - 1,546 (1,546/1,575)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 10, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0024289
HIT000252326
(
AY358282
)
(Leucine-rich repeat-containing protein 3B precursor.)
genome : 26,751,002 - 26,752,263 (1,262)
query : 17 - 1,278 (1,262/1,305)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.986
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 10, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024289)
HIX0163841
HIT000544535 (
ENST00000446601
)
(Hypothetical short protein.)
genome : 26,753,798 - 26,754,855 (1,058)
query : 1 - 582 (582/582)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163841)
HIX0163533
HIT000506604 (
ENST00000408511
)
(Hypothetical short protein.)
genome : 26,795,428 - 26,795,567 (140)
query : 1 - 140 (140/140)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163533)
HIX0030729
HIT000494380
(
AK299756
)
(Retinoic acid receptor beta; RAR-beta; HBV-activated protein; Nuclear receptor subfamily 1 group B member 2; RAR-epsilon;)
genome : 25,215,823 - 25,638,292 (422,470)
query : 1 - 1,577 (1,577/1,577)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;0.994;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000365050 (
ENST00000383772
)
(Retinoic acid receptor family protein.)
genome : 25,215,823 - 25,637,946 (422,124)
query : 1 - 1,273 (1,273/1,273)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000505044 (
ENST00000404969
)
(Retinoic acid receptor family protein.)
genome : 25,215,889 - 25,638,107 (422,219)
query : 1 - 1,368 (1,368/1,368)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000341091
(
DQ083391
)
(Retinoic acid receptor family protein.)
genome : 25,382,293 - 25,622,109 (239,817)
query : 1 - 615 (615/615)
5 exons
identity = 0.995
5'(0.993;0.993;1.000;0.986)3'
coverage = 1.000
InterPro :
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000205912 (
NM_016152
)
(Steroid hormone receptor family protein.)
genome : 25,469,754 - 25,639,421 (169,668)
query : 1 - 2,773 (2,773/2,865)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 22, cyto 4, nucl 2, mito 2, E.R. 2, E.R._mito 2,
cyto_pero 2, cyto_golg 2, mito_nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000534976 (
ENST00000437042
)
(Steroid hormone receptor family protein.)
genome : 25,469,754 - 25,639,423 (169,670)
query : 1 - 2,775 (2,775/2,775)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 22, cyto 4, nucl 2, mito 2, E.R. 2, E.R._mito 2,
cyto_pero 2, cyto_golg 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000071996
(
AF157483
)
(Retinoic acid receptor beta isoform 2.)
genome : 25,469,754 - 25,638,111 (168,358)
query : 1 - 1,462 (1,462/1,462)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 22, cyto 4, nucl 2, mito 2, E.R. 2, E.R._mito 2,
cyto_pero 2, cyto_golg 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000126811 (
ENST00000330688
)
(Retinoic acid receptor family protein.)
genome : 25,469,802 - 25,639,423 (169,622)
query : 1 - 3,084 (3,084/3,084)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000092091
(
BC030234
)
(Retinoic acid receptor beta isoform 1.)
genome : 25,469,834 - 25,639,421 (169,588)
query : 1 - 3,049 (3,049/3,141)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000197973 (
NM_000965
)
(Retinoic acid receptor family protein.)
genome : 25,469,834 - 25,639,421 (169,588)
query : 1 - 3,050 (3,050/3,142)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000321249
(
X07282
)
(Retinoic acid receptor beta isoform 1.)
genome : 25,469,883 - 25,638,175 (168,293)
query : 4 - 1,758 (1,755/1,758)
8 exons
identity = 0.997
5'(1.000;1.000;0.994;1.000;0.995;1.000;0.996)3'
coverage = 0.998
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000325278
(
Y00291
)
(Retinoic acid receptor beta isoform 1.)
genome : 25,469,902 - 25,639,420 (169,519)
query : 1 - 2,972 (2,972/2,972)
8 exons
identity = 0.995
5'(1.000;1.000;0.994;1.000;1.000;1.000;0.991)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000260096
(
BC060794
)
Representative transcript
(Retinoic acid receptor beta isoform 1.)
genome : 25,470,072 - 25,639,421 (169,350)
query : 1 - 2,813 (2,813/2,828)
8 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000424829
(
AK292032
)
(Retinoic acid receptor beta isoform 1.)
genome : 25,470,204 - 25,638,148 (167,945)
query : 1 - 1,407 (1,407/1,407)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.994;1.000)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000567117 (
ENST00000462272
)
(Retinoic acid receptor family protein.)
genome : 25,470,207 - 25,638,140 (167,934)
query : 1 - 1,258 (1,258/1,258)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000583178 (
ENST00000479097
)
(Retinoic acid receptor family protein.)
genome : 25,470,207 - 25,638,140 (167,934)
query : 1 - 1,235 (1,235/1,235)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, E.R._mito 6.66667, plas 5, E.R. 4.5,
mito_pero 3.66667, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000584042 (
ENST00000480001
)
(Retinoic acid receptor family protein.)
genome : 25,470,207 - 25,638,140 (167,934)
query : 1 - 1,191 (1,191/1,191)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000486599
(
AB307688
)
(Retinoic acid receptor beta isoform 1.)
genome : 25,470,223 - 25,638,107 (167,885)
query : 1 - 1,347 (1,347/1,347)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;0.994;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000653617
(
HQ692864
)
(Retinoic acid receptor beta isoform 1.)
genome : 25,470,223 - 25,638,107 (167,885)
query : 1 - 1,347 (1,347/1,347)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000556580 (
ENST00000458646
)
(Steroid hormone receptor family protein.)
genome : 25,499,801 - 25,639,423 (139,623)
query : 1 - 2,590 (2,590/2,590)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 22, cyto 4, nucl 2, mito 2, E.R. 2, E.R._mito 2,
cyto_pero 2, cyto_golg 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
HIX0030729
HIT000255021
(
AY501390
)
(Retinoic acid receptor beta; RAR-beta; HBV-activated protein; Nuclear receptor subfamily 1 group B member 2; RAR-epsilon;)
genome : 25,499,826 - 25,639,420 (139,595)
query : 1 - 2,552 (2,552/2,552)
8 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.991)3'
coverage = 1.000
InterPro :
IPR000536 : Nuclear hormone receptor, ligand-binding, core
IPR001628 : Zinc finger, nuclear hormone receptor-type
IPR001723 : Steroid hormone receptor
IPR003078 : Retinoic acid receptor
IPR008946 : Nuclear hormone receptor, ligand-binding
IPR013088 : Zinc finger, NHR/GATA-type
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0003707 : Molecular Function : steroid hormone receptor activity
0003708 : Molecular Function : retinoic acid receptor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
0043401 : Biological Process : steroid hormone mediated signaling pathway
0043565 : Molecular Function : sequence-specific DNA binding
0048384 : Biological Process : retinoic acid receptor signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 22, cyto 4, nucl 2, mito 2, E.R. 2, E.R._mito 2,
cyto_pero 2, cyto_golg 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030729)
AC133141.2
25500001-25543542 F +
NCBI
AC093416.2
25543543-25730988 F +
NCBI
AC092798.3
25730989-25861830 F -
NCBI
AC103588.2
25861831-26025694 F +
NCBI
AC093411.2
26025695-26091711 F -
NCBI
AC138023.2
26091712-26219162 F +
NCBI
AC139932.4
26219163-26320430 F -
NCBI
AC139933.2
26320431-26386914 F +
NCBI
AC098615.2
26386915-26552399 F -
NCBI
AC099754.2
26552400-26742998 F -
NCBI
AC114877.2
26742999-26806958 F +
NCBI
AC138070.3
26806959-26944589 F +
NCBI
AC093558.2
26944590-27051042 F +
NCBI
AC098931.3
27051043-27100000 F +
NCBI