bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0204337
HIT000124907_03 (
ENST00000327274
)
(Ribosomal protein L21e family protein.)
genome : 145,542,030 - 145,542,549 (520)
query : 1 - 520 (520/543)
1 exon
identity = 0.975
3'(0.975)5'
coverage = 0.958
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11.5, mito 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204337)
HIX0204337
HIT000504660_03 (
ENST00000403916
)
(Ribosomal protein L21e family protein.)
genome : 145,542,030 - 145,542,549 (520)
query : 1 - 520 (520/543)
1 exon
identity = 0.973
3'(0.973)5'
coverage = 0.958
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11.5, mito 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204337)
HIX0204337
HIT000635602_02 (
ENST00000536557
)
(Ribosomal protein L21e family protein.)
genome : 145,542,030 - 145,542,549 (520)
query : 1 - 520 (520/542)
1 exon
identity = 0.977
3'(0.977)5'
coverage = 0.959
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11.5, mito 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204337)
HIX0204337
HIT000568393_02 (
ENST00000463605
)
(Ribosomal protein L21e family protein.)
genome : 145,542,044 - 145,542,526 (483)
query : 1 - 483 (483/483)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 11.5, nucl 10.5, mito 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204337)
HIX0204337
HIT000482055_03 (
ENST00000398929
)
(Ribosomal protein L21e family protein.)
genome : 145,542,044 - 145,542,439 (396)
query : 1 - 396 (396/396)
1 exon
identity = 0.955
3'(0.955)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 11.6667, cyto_plas 8.16667, nucl 8,
extr 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204337)
HIX0204378
HIT000598748 (
ENST00000495382
)
(Hypothetical short protein.)
genome : 145,657,699 - 145,679,323 (21,625)
query : 1 - 799 (799/799)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, mito 8, extr 4, E.R._mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204378)
HIX0204378
HIT000586291 (
ENST00000482351
)
(Hypothetical short protein.)
genome : 145,657,755 - 145,675,618 (17,864)
query : 1 - 624 (624/624)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, nucl 11, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204378)
HIX0204905
HIT000597905 (
ENST00000494509
)
(Hypothetical short protein.)
genome : 145,679,542 - 145,681,410 (1,869)
query : 1 - 569 (569/569)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, cyto_nucl 5.5, cyto 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204905)
HIX0024454
HIT000049212
(
AK129941
)
Representative transcript
(Conserved hypothetical protein.)
genome : 145,767,418 - 145,770,803 (3,386)
query : 7 - 3,389 (3,383/3,389)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024454)
HIX0003750
HIT000024442
(
AL110176
)
Representative transcript
(Conserved hypothetical protein.)
genome : 145,777,372 - 145,779,466 (2,095)
query : 1 - 2,093 (2,093/2,113)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 13, nucl 1, mito 1, lyso 1, golg 1,
mito_nucl 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003750)
HIX0003750
HIT000680716 (
ENST00000567714
)
(Hypothetical short protein.)
genome : 145,777,372 - 145,779,466 (2,095)
query : 1 - 2,095 (2,095/2,095)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 13, nucl 1, mito 1, lyso 1, golg 1,
mito_nucl 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003750)
HIX0030720
HIT000595441 (
ENST00000491932
)
(Hypothetical short protein.)
genome : 145,781,829 - 145,782,909 (1,081)
query : 1 - 445 (445/445)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030720)
HIX0030720
HIT000584274 (
ENST00000480247
)
(Hypothetical short protein.)
genome : 145,781,906 - 145,822,991 (41,086)
query : 1 - 555 (555/555)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, cyto 16, cyto_plas 11.1667, nucl 6.5,
mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030720)
HIX0030720
HIT000070041
(
AF116706
)
Representative transcript
(Conserved hypothetical protein.)
genome : 145,782,358 - 145,784,172 (1,815)
query : 1 - 1,815 (1,815/1,817)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030720)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : ENSPTRT00000049322
HIX0030720
HIT000520416 (
ENST00000422482
)
(Conserved hypothetical protein.)
genome : 145,782,358 - 145,784,156 (1,799)
query : 1 - 1,799 (1,799/1,799)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030720)
HIX0030720
HIT000598134 (
ENST00000494745
)
(Conserved hypothetical protein.)
genome : 145,782,680 - 145,786,044 (3,365)
query : 1 - 278 (278/278)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030720)
HIX0204860
HIT000593937 (
ENST00000490375
)
(Conserved hypothetical protein.)
genome : 145,784,131 - 145,786,972 (2,842)
query : 1 - 709 (709/709)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, nucl 6, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204860)
HIX0200525
HIT000089086
(
BC016834
)
(Procollagen-lysine 5-dioxygenase family protein.)
genome : 145,787,229 - 145,794,601 (7,373)
query : 1 - 1,908 (1,908/2,013)
6 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001006 : Procollagen-lysine 5-dioxygenase
IPR005123 : Oxoglutarate/iron-dependent dioxygenase
IPR006620 : Prolyl 4-hydroxylase, alpha subunit
GO :
0005506 : Molecular Function : iron ion binding
0005783 : Cellular Component : endoplasmic reticulum
0008475 : Molecular Function : procollagen-lysine 5-dioxygenase activity
0016491 : Molecular Function : oxidoreductase activity
0016705 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0031418 : Molecular Function : L-ascorbic acid binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 15, extr 2, nucl 2, mito 2, pero 2,
mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200525)
HIX0200525
HIT000027150
(
AL832238
)
(Procollagen-lysine 5-dioxygenase family protein.)
genome : 145,787,229 - 145,799,547 (12,319)
query : 1 - 2,217 (2,217/2,233)
9 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001006 : Procollagen-lysine 5-dioxygenase
IPR005123 : Oxoglutarate/iron-dependent dioxygenase
IPR006620 : Prolyl 4-hydroxylase, alpha subunit
GO :
0005506 : Molecular Function : iron ion binding
0005783 : Cellular Component : endoplasmic reticulum
0008475 : Molecular Function : procollagen-lysine 5-dioxygenase activity
0016491 : Molecular Function : oxidoreductase activity
0016705 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0031418 : Molecular Function : L-ascorbic acid binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, mito 3, extr 2, pero 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200525)
HIX0200525
HIT000049369
(
AK130098
)
(Hypothetical short protein.)
genome : 145,787,224 - 145,788,068 (845)
query : 1 - 845 (845/845)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_mito 9, mito 6.5, plas 5, extr 4,
nucl 3, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200525)
HIX0200525
HIT000566379 (
ENST00000461497
)
(Procollagen-lysine 5-dioxygenase family protein.)
genome : 145,787,227 - 145,803,676 (16,450)
query : 1 - 3,043 (3,043/3,043)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 5, cyto 3.5, pero 3, cyto_nucl 2.5,
extr_plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200525)
HIX0200525
HIT000599059 (
ENST00000495700
)
(Procollagen-lysine 5-dioxygenase family protein.)
genome : 145,788,028 - 145,788,957 (930)
query : 1 - 761 (761/761)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13.3333, cyto_pero 11.3333,
extr 6, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200525)
HIX0200525
HIT000045573
(
AK125700
)
Representative transcript
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2; EC=1.14.11.4; Lysyl hydroxylase 2; LH2; Precursor;)
genome : 145,788,298 - 145,803,676 (15,379)
query : 1 - 1,972 (1,972/1,972)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001006 : Procollagen-lysine 5-dioxygenase
IPR005123 : Oxoglutarate/iron-dependent dioxygenase
IPR006620 : Prolyl 4-hydroxylase, alpha subunit
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0005506 : Molecular Function : iron ion binding
0005783 : Cellular Component : endoplasmic reticulum
0008475 : Molecular Function : procollagen-lysine 5-dioxygenase activity
0016491 : Molecular Function : oxidoreductase activity
0016705 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0031418 : Molecular Function : L-ascorbic acid binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 5, cyto 3.5, pero 3, cyto_nucl 2.5,
extr_plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200525)
HIX0200525
HIT000579742 (
ENST00000475505
)
(Conserved hypothetical protein.)
genome : 145,790,344 - 145,791,444 (1,101)
query : 1 - 480 (480/480)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 11, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200525)
HIX0200525
HIT000054306
(
BX537521
)
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2; EC=1.14.11.4; Lysyl hydroxylase 2; LH2; Precursor;)
genome : 145,793,716 - 145,804,522 (10,807)
query : 1 - 3,845 (3,845/3,861)
4 exons
identity = 0.995
3'(0.993;1.000;1.000;0.997)5'
coverage = 1.000
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto_nucl 10.5, nucl 9, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200525)
HIX0200525
HIT000582542 (
ENST00000478436
)
(Conserved hypothetical protein.)
genome : 145,793,712 - 145,804,522 (10,811)
query : 1 - 3,835 (3,835/3,835)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto_nucl 10.5, nucl 9, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200525)
HIX0200525
HIT000565446 (
ENST00000460520
)
(Glycosyltransferase 2-like, prokaryotic type domain containing protein.)
genome : 145,799,578 - 145,806,602 (7,025)
query : 1 - 530 (530/530)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 15, cyto_plas 11.8333, mito 5,
nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200525)
HIX0215517
HIT000573875 (
ENST00000469350
)
(Conserved hypothetical protein.)
genome : 145,820,547 - 145,881,440 (60,894)
query : 1 - 723 (723/723)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 10.5, cyto_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215517)
HIX0215517
HIT000584704 (
ENST00000480704
)
(Conserved hypothetical protein.)
genome : 145,828,087 - 145,878,778 (50,692)
query : 1 - 550 (550/550)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 10, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215517)
HIX0057294
HIT000333393
(
AY962470
)
Representative transcript
(Non-protein coding transcript.)
genome : 145,884,665 - 145,884,911 (247)
query : 5 - 251 (247/262)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.976
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057294)
HIX0003751
HIT000207869 (
NM_020353
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,910,122 - 145,968,966 (58,845)
query : 1 - 3,307 (3,307/3,312)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000559444 (
NM_001128304
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,910,122 - 145,968,966 (58,845)
query : 1 - 3,433 (3,433/3,438)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000559446 (
NM_001128306
)
(Phospholipid scramblase 4 isoform b.)
genome : 145,910,122 - 145,968,966 (58,845)
query : 1 - 3,037 (3,037/3,042)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17, cyto_nucl 11.5, extr 10, nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000655162 (
NM_001177304
)
(Phospholipid scramblase 4 isoform c.)
genome : 145,910,122 - 145,968,966 (58,845)
query : 1 - 3,009 (3,009/3,014)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 23, cyto_nucl 15, nucl 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000559445 (
NM_001128305
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,910,122 - 145,968,651 (58,530)
query : 1 - 3,395 (3,395/3,400)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000309168 (
ENST00000354952
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,910,126 - 145,968,966 (58,841)
query : 1 - 3,303 (3,303/3,303)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000364361 (
ENST00000383083
)
(Phospholipid scramblase 4 isoform b.)
genome : 145,910,126 - 145,968,966 (58,841)
query : 1 - 3,033 (3,033/3,033)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17, cyto_nucl 11.5, extr 10, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000073708
(
AF199023
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,910,126 - 145,968,870 (58,745)
query : 1 - 3,206 (3,206/3,206)
9 exons
identity = 0.998
3'(0.998;1.000;1.000;0.996;1.000;1.000;0.991;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000028672
(
AL833760
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,910,191 - 145,968,880 (58,690)
query : 1 - 3,151 (3,151/3,170)
9 exons
identity = 0.999
3'(0.999;1.000;1.000;0.996;1.000;1.000;0.991;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000040530
(
BC028354
)
Representative transcript
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,910,191 - 145,968,966 (58,776)
query : 1 - 3,236 (3,236/3,251)
9 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK141580
Rattus
sp. (Rat) : AY548832
Bos
sp. (Cow) : BC133592
Pongo
sp. (Orangutan) : CR858163
Danio
sp. (Zebrafish) : NM_001105113
Takifugu
sp. (Fugu) : SINFRUT00000150664
Macaca
sp. (Macaque) : XM_001111515
Monodelphis
sp. (Opossum) : XM_001371720
Monodelphis
sp. (Opossum) : XM_001371737
Equus
sp. (Horse) : XM_001917576
Canis
sp. (Dog) : XM_849167
Pan
sp. (Chimpanzee) : XR_022683
HIX0003751
HIT000048315
(
AK128442
)
(Phospholipid scramblase 4 isoform c.)
genome : 145,910,192 - 145,968,866 (58,675)
query : 1 - 2,838 (2,838/2,838)
6 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 23, cyto_nucl 15, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000531527 (
ENST00000433593
)
(Phospholipid scramblase 4 isoform c.)
genome : 145,910,192 - 145,968,866 (58,675)
query : 1 - 2,839 (2,839/2,839)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 23, cyto_nucl 15, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000242632
(
AF087887
)
(Phospholipid scramblase 4 isoform c.)
genome : 145,911,933 - 145,924,531 (12,599)
query : 1 - 1,128 (1,128/1,128)
6 exons
identity = 0.984
3'(0.994;1.000;1.000;0.945;1.000;0.986)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 8.5, cyto_nucl 8.5, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000544508 (
ENST00000446574
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,912,078 - 145,968,654 (56,577)
query : 1 - 1,442 (1,442/1,442)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000423011
(
AK290214
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,912,078 - 145,968,591 (56,514)
query : 1 - 1,379 (1,379/1,379)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.992)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000596820 (
ENST00000493382
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,912,144 - 145,968,930 (56,787)
query : 1 - 1,375 (1,375/1,375)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000425612
(
AK292815
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,912,144 - 145,968,866 (56,723)
query : 1 - 1,311 (1,311/1,311)
11 exons
identity = 0.998
3'(0.980;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14.5, extr 12, cyto_nucl 11, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000331913
(
AY550971
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,912,177 - 145,968,820 (56,644)
query : 1 - 1,106 (1,106/1,106)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000431675
(
AK312809
)
(Phospholipid scramblase 4; PL scramblase 4; Ca(2+)-dependent phospholipid scramblase 4; Cell growth-inhibiting gene 43 protein; TRA1;)
genome : 145,912,198 - 145,968,907 (56,710)
query : 2 - 1,173 (1,172/1,173)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;1.000)5'
coverage = 0.999
InterPro :
IPR005552 : Scramblase
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 9, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000579285 (
ENST00000475019
)
(Phospholipid scramblase 4 isoform b.)
genome : 145,914,192 - 145,939,879 (25,688)
query : 1 - 807 (807/807)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000565281 (
ENST00000460350
)
(Phospholipid scramblase 4 isoform a.)
genome : 145,914,419 - 145,968,912 (54,494)
query : 1 - 1,054 (1,054/1,054)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000565798 (
ENST00000460885
)
(Phospholipid scramblase 4 isoform b.)
genome : 145,914,493 - 145,968,892 (54,400)
query : 1 - 609 (609/609)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000580409 (
ENST00000476202
)
(Phospholipid scramblase 4 isoform a.)
genome : 145,917,600 - 145,968,870 (51,271)
query : 1 - 814 (814/814)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000585666 (
ENST00000481701
)
(Phospholipid scramblase 4 isoform a.)
genome : 145,917,796 - 145,940,220 (22,425)
query : 1 - 683 (683/683)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0003751
HIT000601838 (
ENST00000498625
)
(Phospholipid scramblase 4 isoform b.)
genome : 145,924,374 - 145,940,158 (15,785)
query : 1 - 593 (593/593)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003751)
HIX0204558
HIT000568923 (
ENST00000464158
)
(Conserved hypothetical protein.)
genome : 146,060,783 - 146,066,267 (5,485)
query : 1 - 433 (433/433)
3 exons
identity = 0.980
3'(1.000;0.907;0.971)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11.5, extr 11, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204558)
HIX0204766
HIT000593908 (
ENST00000490344
)
(Scramblase family protein.)
genome : 146,109,150 - 146,134,390 (25,241)
query : 1 - 705 (705/705)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10.5, cysk 8, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204766)
HIX0204766
HIT000586799 (
ENST00000482888
)
(Scramblase family protein.)
genome : 146,113,527 - 146,134,364 (20,838)
query : 1 - 637 (637/637)
4 exons
identity = 0.984
3'(1.000;0.961;0.987;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_mito 9.5, plas 7, mito 6.5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204766)
HIX0200552
HIT000259506
(
BC055415
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,151,081 - 146,213,778 (62,698)
query : 5 - 1,213 (1,209/1,240)
8 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.997
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, mito 7, E.R._mito 5.5, E.R. 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0200552
HIT000656740 (
NM_001199979
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,151,075 - 146,213,778 (62,704)
query : 1 - 1,215 (1,215/1,215)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, mito 7, E.R._mito 5.5, E.R. 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0200552
HIT000656739 (
NM_001199978
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,151,075 - 146,187,088 (36,014)
query : 1 - 1,598 (1,598/1,598)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto_nucl 6, nucl 5.5, cyto 5.5, plas 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0200552
HIT000072037
(
AF159441
)
Representative transcript
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,151,082 - 146,213,722 (62,641)
query : 1 - 1,265 (1,265/1,265)
9 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 8, E.R._mito 6.33333, extr 6, cyto_nucl 6,
mito 5.5, cyto_plas 5.5, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ720323
Mus
sp. (Mouse) : AK003628
Mus
sp. (Mouse) : AK132905
Rattus
sp. (Rat) : AY548832
Bos
sp. (Cow) : BC103299
Macaca
sp. (Macaque) : ENSMMUT00000045533
Pongo
sp. (Orangutan) : ENSPPYT00000016494
Tetraodon
sp. (Tetraodon) : GSTENT00023946001
Danio
sp. (Zebrafish) : NM_001128395
Takifugu
sp. (Fugu) : SINFRUT00000158899
Monodelphis
sp. (Opossum) : XM_001371699
Equus
sp. (Horse) : XM_001492309
Pan
sp. (Chimpanzee) : XM_516803
Canis
sp. (Dog) : XM_849174
HIX0200552
HIT000130182 (
ENST00000336685
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,151,082 - 146,213,722 (62,641)
query : 1 - 1,265 (1,265/1,265)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 8, E.R._mito 6.33333, extr 6, cyto_nucl 6,
mito 5.5, cyto_plas 5.5, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0200552
HIT000263936
(
BC069785
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,151,198 - 146,178,005 (26,808)
query : 1 - 1,042 (1,042/1,042)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 8, E.R._mito 6.33333, extr 6, cyto_nucl 6,
mito 5.5, cyto_plas 5.5, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0200552
HIT000496533
(
AK301909
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,151,232 - 146,187,088 (35,857)
query : 1 - 1,441 (1,441/1,441)
10 exons
identity = 0.997
3'(0.986;1.000;0.988;1.000;1.000;1.000;0.996;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto_nucl 6, nucl 5.5, cyto 5.5, plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0200552
HIT000601230 (
ENST00000497985
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,151,232 - 146,187,088 (35,857)
query : 1 - 1,441 (1,441/1,441)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto_nucl 6, nucl 5.5, cyto 5.5, plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0200552
HIT000435297
(
BC141969
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,159,551 - 146,178,077 (18,527)
query : 1 - 1,001 (1,001/1,009)
7 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.992)5'
coverage = 0.992
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 8, E.R._mito 6.33333, extr 6, cyto_nucl 6,
mito 5.5, cyto_plas 5.5, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0200552
HIT000388166
(
BC120969
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,159,551 - 146,178,077 (18,527)
query : 1 - 1,001 (1,001/1,001)
7 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.992)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 8, E.R._mito 6.33333, extr 6, cyto_nucl 6,
mito 5.5, cyto_plas 5.5, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0200552
HIT000592632 (
ENST00000489015
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,171,789 - 146,213,778 (41,990)
query : 1 - 759 (759/759)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, mito 8, E.R._mito 6.16667, mito_pero 6.16667,
E.R. 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0200552
HIT000578711 (
ENST00000474418
)
(Hypothetical short protein.)
genome : 146,212,381 - 146,213,741 (1,361)
query : 1 - 499 (499/499)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200552)
HIX0021506
HIT000020027
(
AK095172
)
Representative transcript
(Conserved hypothetical protein.)
genome : 146,222,357 - 146,224,347 (1,991)
query : 1 - 1,991 (1,991/1,991)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, cyto 2, mito 2, cyto_mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021506)
HIX0003753
HIT000264209
(
BC070251
)
(Phospholipid scramblase 1.)
genome : 146,232,968 - 146,262,308 (29,341)
query : 1 - 1,384 (1,384/1,415)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11.5, extr 10, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000208232 (
NM_021105
)
(Phospholipid scramblase 1; PL scramblase 1; Ca(2+)-dependent phospholipid scramblase 1; Erythrocyte phospholipid scramblase; MmTRA1b;)
genome : 146,232,967 - 146,262,628 (29,662)
query : 1 - 2,210 (2,210/2,228)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_mito 9.66667, mito_pero 6.33333,
cyto_golg 6.33333, mito 5.5, nucl 5, pero 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000041691
(
BC032718
)
(Phospholipid scramblase 1; PL scramblase 1; Ca(2+)-dependent phospholipid scramblase 1; Erythrocyte phospholipid scramblase; MmTRA1b;)
genome : 146,232,967 - 146,262,366 (29,400)
query : 11 - 1,958 (1,948/1,976)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.995
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_mito 9.66667, mito_pero 6.33333,
cyto_golg 6.33333, mito 5.5, nucl 5, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000039085
(
BC021100
)
(Phospholipid scramblase 1; PL scramblase 1; Ca(2+)-dependent phospholipid scramblase 1; Erythrocyte phospholipid scramblase; MmTRA1b;)
genome : 146,232,967 - 146,262,328 (29,362)
query : 1 - 1,910 (1,910/1,927)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_mito 9.66667, mito_pero 6.33333,
cyto_golg 6.33333, mito 5.5, nucl 5, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000135065 (
ENST00000342435
)
(Phospholipid scramblase 1; PL scramblase 1; Ca(2+)-dependent phospholipid scramblase 1; Erythrocyte phospholipid scramblase; MmTRA1b;)
genome : 146,232,967 - 146,262,651 (29,685)
query : 1 - 2,233 (2,233/2,233)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_mito 9.66667, mito_pero 6.33333,
cyto_golg 6.33333, mito 5.5, nucl 5, pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000058088
(
AB006746
)
Representative transcript
(Phospholipid scramblase 1; PL scramblase 1; Ca(2+)-dependent phospholipid scramblase 1; Erythrocyte phospholipid scramblase; MmTRA1b;)
genome : 146,232,968 - 146,262,496 (29,529)
query : 1 - 2,077 (2,077/2,077)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.992)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_mito 9.66667, mito_pero 6.33333,
cyto_golg 6.33333, mito 5.5, nucl 5, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ720323
Mus
sp. (Mouse) : AK002410
Mus
sp. (Mouse) : AK003628
Rattus
sp. (Rat) : BC079090
Rattus
sp. (Rat) : BC085715
Bos
sp. (Cow) : BC103299
Oryzias
sp. (Medaka) : ENSORLT00000012616
Pongo
sp. (Orangutan) : ENSPPYT00000016495
Tetraodon
sp. (Tetraodon) : GSTENT00023946001
Takifugu
sp. (Fugu) : SINFRUT00000150664
Macaca
sp. (Macaque) : XM_001111222
Pan
sp. (Chimpanzee) : XM_001135562
Monodelphis
sp. (Opossum) : XM_001367990
Monodelphis
sp. (Opossum) : XM_001371699
Equus
sp. (Horse) : XM_001492309
Danio
sp. (Zebrafish) : XM_688115
Canis
sp. (Dog) : XM_849174
HIX0003753
HIT000068554
(
AF098642
)
(Phospholipid scramblase 1; PL scramblase 1; Ca(2+)-dependent phospholipid scramblase 1; Erythrocyte phospholipid scramblase; MmTRA1b;)
genome : 146,232,968 - 146,262,495 (29,528)
query : 1 - 2,076 (2,076/2,076)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_mito 9.66667, mito_pero 6.33333,
cyto_golg 6.33333, mito 5.5, nucl 5, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000546139 (
ENST00000448205
)
(Phospholipid scramblase 1.)
genome : 146,232,968 - 146,262,308 (29,341)
query : 1 - 1,384 (1,384/1,384)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11.5, extr 10, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000596868 (
ENST00000493432
)
(Phospholipid scramblase 1.)
genome : 146,232,968 - 146,262,308 (29,341)
query : 1 - 1,384 (1,384/1,384)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11.5, extr 10, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000568556 (
ENST00000463777
)
(Phospholipid scramblase 1.)
genome : 146,233,589 - 146,262,342 (28,754)
query : 1 - 701 (701/701)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11.5, extr 10, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000591094 (
ENST00000487389
)
(Phospholipid scramblase 1.)
genome : 146,233,604 - 146,262,524 (28,921)
query : 1 - 1,443 (1,443/1,443)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, mito_pero 7.5, pero 7, cyto_plas 7, mito 6,
cyto_golg 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000573526 (
ENST00000468985
)
(Phospholipid scramblase 1; PL scramblase 1; Ca(2+)-dependent phospholipid scramblase 1;)
genome : 146,233,739 - 146,262,342 (28,604)
query : 1 - 983 (983/983)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, cyto_mito 13.5, cyto 9.5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000494805
(
AK300181
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,233,742 - 146,262,407 (28,666)
query : 4 - 999 (996/999)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.997
InterPro :
IPR005552 : Scramblase
IPR025659 : Tubby C-terminal-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, cyto_mito 13.5, cyto 9.5, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000546721 (
ENST00000448787
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,233,742 - 146,262,407 (28,666)
query : 1 - 996 (996/996)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, cyto_mito 13.5, cyto 9.5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000432243
(
AK313377
)
(Phospholipid scramblase 1; PL scramblase 1; Ca(2+)-dependent phospholipid scramblase 1; Erythrocyte phospholipid scramblase; MmTRA1b;)
genome : 146,233,832 - 146,262,394 (28,563)
query : 1 - 1,111 (1,111/1,111)
9 exons
identity = 0.999
3'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_mito 9.66667, mito_pero 6.33333,
cyto_golg 6.33333, mito 5.5, nucl 5, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000591909 (
ENST00000488253
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,233,846 - 146,262,317 (28,472)
query : 1 - 581 (581/581)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, plas 10, cyto_mito 7.33333, extr 3,
E.R._mito 2.33333, nucl 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000593366 (
ENST00000489775
)
(Phospholipid scramblase 1.)
genome : 146,233,857 - 146,262,334 (28,478)
query : 1 - 984 (984/984)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14, cyto 7.5, cyto_mito 4.83333, extr 4, nucl 2,
E.R._mito 1.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000588403 (
ENST00000484560
)
(Phospholipid scramblase 1; PL scramblase 1; Ca(2+)-dependent phospholipid scramblase 1; Transplantability-associated protein 1; NOR1; TRA1;)
genome : 146,234,227 - 146,235,181 (955)
query : 1 - 629 (629/629)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 9.5, cyto_nucl 8, cyto_plas 7.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000582381 (
ENST00000478267
)
(Phospholipid scramblase 1; PL scramblase 1; Ca(2+)-dependent phospholipid scramblase 1;)
genome : 146,234,690 - 146,262,325 (27,636)
query : 1 - 870 (870/870)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16.5, cyto_mito 12, cyto 6.5, nucl 4, plas 2,
E.R. 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000587197 (
ENST00000483300
)
(Phospholipid scramblase 1.)
genome : 146,234,779 - 146,246,537 (11,759)
query : 1 - 514 (514/514)
4 exons
identity = 0.990
3'(0.972;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 13.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000574967 (
ENST00000470496
)
(Phospholipid scramblase 1.)
genome : 146,234,799 - 146,239,499 (4,701)
query : 1 - 340 (340/340)
2 exons
identity = 0.977
3'(1.000;0.957)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000567490 (
ENST00000462666
)
(Phospholipid scramblase 1.)
genome : 146,234,876 - 146,262,357 (27,482)
query : 1 - 862 (862/862)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, extr 11, cyto_nucl 9.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000590376 (
ENST00000486631
)
(Phospholipid scramblase 2; PL scramblase 2; Ca(2+)-dependent phospholipid scramblase 2;)
genome : 146,239,313 - 146,262,428 (23,116)
query : 1 - 698 (698/701)
5 exons
identity = 0.990
3'(0.961;1.000;1.000;1.000;1.000)5'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 9.5, cyto_nucl 5.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000576729 (
ENST00000472349
)
(Phospholipid scramblase 1.)
genome : 146,239,331 - 146,262,643 (23,313)
query : 1 - 1,188 (1,188/1,198)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.992
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 8, cyto 7.5, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000597964 (
ENST00000494568
)
(Phospholipid scramblase 1.)
genome : 146,239,504 - 146,262,365 (22,862)
query : 1 - 817 (817/817)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 5.5, cyto_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000594291 (
ENST00000490745
)
(Phospholipid scramblase 1.)
genome : 146,243,316 - 146,254,606 (11,291)
query : 1 - 480 (480/480)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11.5, extr 10, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000038188
(
BC017901
)
(Phospholipid scramblase 1.)
genome : 146,245,733 - 146,262,371 (16,639)
query : 1 - 1,111 (1,111/1,143)
4 exons
identity = 0.998
3'(0.999;1.000;1.000;0.992)5'
coverage = 0.997
InterPro :
IPR005552 : Scramblase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 15.5, cyto 11.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000573796 (
ENST00000469266
)
(Phospholipid scramblase 1.)
genome : 146,245,730 - 146,262,514 (16,785)
query : 1 - 1,257 (1,257/1,257)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 15.5, cyto 11.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0003753
HIT000582097 (
ENST00000477974
)
(Hypothetical short protein.)
genome : 146,258,640 - 146,262,340 (3,701)
query : 1 - 415 (415/415)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003753)
HIX0031178
HIT000595693 (
ENST00000492200
)
(Scramblase family protein.)
genome : 146,294,342 - 146,323,026 (28,685)
query : 1 - 1,058 (1,058/1,058)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 12.5, cyto 10.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031178)
HIX0031178
HIT000586492 (
ENST00000482567
)
(Scramblase family protein.)
genome : 146,294,346 - 146,323,026 (28,681)
query : 1 - 1,018 (1,018/1,018)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 13.5, nucl 10.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031178)
HIX0031178
HIT000503648
(
BC171917
)
Representative transcript
(Phospholipid scramblase family member 5.)
genome : 146,294,395 - 146,323,026 (28,632)
query : 1 - 969 (969/969)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
IPR025659 : Tubby C-terminal-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 13.5, nucl 10.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031178)
HIX0031178
HIT000503441
(
BC157886
)
(Phospholipid scramblase family member 5.)
genome : 146,294,402 - 146,323,026 (28,625)
query : 1 - 962 (962/962)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
IPR025659 : Tubby C-terminal-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 13.5, nucl 10.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031178)
HIX0031178
HIT000386059
(
AY436642
)
(Phospholipid scramblase family member 5.)
genome : 146,303,625 - 146,324,003 (20,379)
query : 1 - 1,969 (1,969/1,969)
8 exons
identity = 0.998
3'(1.000;1.000;0.994;1.000;0.995;1.000;1.000;
0.998)5'
coverage = 1.000
InterPro :
IPR005552 : Scramblase
IPR025659 : Tubby C-terminal-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 12.5, cyto 10.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031178)
HIX0031178
HIT000398327 (
NM_001085420
)
(Scramblase family protein.)
genome : 146,303,625 - 146,324,003 (20,379)
query : 1 - 1,969 (1,969/1,969)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 12.5, cyto 10.5, extr 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031178)
HIX0031178
HIT000541446 (
ENST00000443512
)
(Scramblase family protein.)
genome : 146,303,625 - 146,324,003 (20,379)
query : 1 - 1,969 (1,969/1,969)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 12.5, cyto 10.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031178)
HIX0204667
HIT000578133 (
ENST00000473817
)
(Conserved hypothetical protein.)
genome : 146,307,389 - 146,308,112 (724)
query : 1 - 450 (450/450)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204667)
HIX0204663
HIT000577637 (
ENST00000473299
)
(Conserved hypothetical protein.)
genome : 146,627,472 - 147,088,443 (460,972)
query : 1 - 570 (570/570)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204663)
HIX0024497
HIT000575314 (
ENST00000470860
)
(Hypothetical short protein.)
genome : 146,639,710 - 146,641,628 (1,919)
query : 1 - 516 (516/516)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024497)
HIX0024497
HIT000054519
(
BX537734
)
Representative transcript
(Conserved hypothetical protein.)
genome : 146,639,750 - 146,643,005 (3,256)
query : 1 - 1,829 (1,829/1,847)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 4.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024497)
HIX0024497
HIT000576052 (
ENST00000471638
)
(Hypothetical short protein.)
genome : 146,639,750 - 146,643,005 (3,256)
query : 1 - 1,829 (1,829/1,829)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 4.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024497)
HIX0205025
HIT000615394 (
ENST00000515991
)
(Non-protein coding transcript.)
genome : 146,671,746 - 146,671,865 (120)
query : 1 - 120 (120/120)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205025)
HIX0215775
HIT000221894
(
U84573
)
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2; EC=1.14.11.4; Lysyl hydroxylase 2; LH2; Precursor;)
genome : 145,787,231 - 145,878,776 (91,546)
query : 1 - 3,481 (3,481/3,503)
19 exons
identity = 0.996
3'(0.990;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001006 : Procollagen-lysine 5-dioxygenase
IPR005123 : Oxoglutarate/iron-dependent dioxygenase
IPR006620 : Prolyl 4-hydroxylase, alpha subunit
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0005506 : Molecular Function : iron ion binding
0005783 : Cellular Component : endoplasmic reticulum
0008475 : Molecular Function : procollagen-lysine 5-dioxygenase activity
0016491 : Molecular Function : oxidoreductase activity
0016705 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0031418 : Molecular Function : L-ascorbic acid binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 9, cyto 5, mito_nucl 5, cyto_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215775)
HIX0215775
HIT000197943 (
NM_000935
)
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2; EC=1.14.11.4; Lysyl hydroxylase 2; LH2; Precursor;)
genome : 145,787,229 - 145,879,282 (92,054)
query : 1 - 3,995 (3,995/4,009)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 9, cyto 5, mito_nucl 5, cyto_pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215775)
HIX0215775
HIT000318873 (
NM_182943
)
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 1 precursor.)
genome : 145,787,229 - 145,879,282 (92,054)
query : 1 - 4,058 (4,058/4,072)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 9, cyto 5, mito_nucl 5, cyto_pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215775)
HIX0215775
HIT000051859
(
BC037169
)
Representative transcript
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 1 precursor.)
genome : 145,787,229 - 145,878,942 (91,714)
query : 12 - 3,729 (3,718/3,743)
20 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.997
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001006 : Procollagen-lysine 5-dioxygenase
IPR005123 : Oxoglutarate/iron-dependent dioxygenase
IPR006620 : Prolyl 4-hydroxylase, alpha subunit
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0005506 : Molecular Function : iron ion binding
0005783 : Cellular Component : endoplasmic reticulum
0008475 : Molecular Function : procollagen-lysine 5-dioxygenase activity
0016491 : Molecular Function : oxidoreductase activity
0016705 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0031418 : Molecular Function : L-ascorbic acid binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 9, cyto 5, mito_nucl 5, cyto_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215775)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172186
Takifugu
sp. (Fugu) : AB259761
Rattus
sp. (Rat) : AJ430860
Mus
sp. (Mouse) : AK157207
Bos
sp. (Cow) : BC151390
Gallus
sp. (Chicken) : BX933988
Danio
sp. (Zebrafish) : DQ020095
Oryzias
sp. (Medaka) : ENSORLT00000012680
Pan
sp. (Chimpanzee) : ENSPTRT00000028906
Tetraodon
sp. (Tetraodon) : GSTENT00023949001
Monodelphis
sp. (Opossum) : XM_001371757
Equus
sp. (Horse) : XM_001493103
Canis
sp. (Dog) : XM_542822
HIX0215775
HIT000112296 (
ENST00000282903
)
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 1 precursor.)
genome : 145,787,227 - 145,878,954 (91,728)
query : 1 - 3,732 (3,732/3,732)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 9, cyto 5, mito_nucl 5, cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215775)
HIX0215775
HIT000313499 (
ENST00000360060
)
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2; EC=1.14.11.4; Lysyl hydroxylase 2; LH2; Precursor;)
genome : 145,787,231 - 145,878,954 (91,724)
query : 1 - 3,665 (3,665/3,665)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 9, cyto 5, mito_nucl 5, cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215775)
HIX0215775
HIT000329814
(
AB209879
)
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2; EC=1.14.11.4; Lysyl hydroxylase 2; LH2; Precursor;)
genome : 145,787,457 - 145,878,954 (91,498)
query : 1 - 3,439 (3,439/3,439)
19 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001006 : Procollagen-lysine 5-dioxygenase
IPR005123 : Oxoglutarate/iron-dependent dioxygenase
IPR006620 : Prolyl 4-hydroxylase, alpha subunit
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0005506 : Molecular Function : iron ion binding
0005783 : Cellular Component : endoplasmic reticulum
0008475 : Molecular Function : procollagen-lysine 5-dioxygenase activity
0016491 : Molecular Function : oxidoreductase activity
0016705 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0031418 : Molecular Function : L-ascorbic acid binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 9, cyto 5, mito_nucl 5, cyto_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215775)
HIX0215775
HIT000489708
(
AK295084
)
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2; EC=1.14.11.4; Lysyl hydroxylase 2; LH2; Precursor;)
genome : 145,787,968 - 145,878,779 (90,812)
query : 3 - 2,910 (2,908/2,910)
20 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001006 : Procollagen-lysine 5-dioxygenase
IPR005123 : Oxoglutarate/iron-dependent dioxygenase
IPR006620 : Prolyl 4-hydroxylase, alpha subunit
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0005506 : Molecular Function : iron ion binding
0005783 : Cellular Component : endoplasmic reticulum
0008475 : Molecular Function : procollagen-lysine 5-dioxygenase activity
0016491 : Molecular Function : oxidoreductase activity
0016705 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0031418 : Molecular Function : L-ascorbic acid binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_pero 14.5, pero 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215775)
HIX0215775
HIT000598332 (
ENST00000494950
)
(Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2; EC=1.14.11.4; Lysyl hydroxylase 2; LH2; Precursor;)
genome : 145,787,968 - 145,878,779 (90,812)
query : 1 - 2,908 (2,908/2,908)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.4
KEGG pathway :
00310 : Lysine degradation (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_pero 14.5, pero 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215775)
HIX0215815
HIT000568421 (
ENST00000463633
)
(Scramblase family protein.)
genome : 146,109,208 - 146,177,861 (68,654)
query : 1 - 574 (574/574)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 26.5, cyto_nucl 16.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215815)
AC069435.19
145500001-145506652 F +
NCBI
AC117468.9
145506653-145530720 F +
NCBI
AC055758.23
145530721-145702132 F -
NCBI
AC092976.5
145702133-145744179 F -
NCBI
AC107021.4
145744180-145866821 F +
NCBI
AC092982.3
145866822-146034976 F +
NCBI
AC130509.6
146034977-146097394 F +
NCBI
AC069528.10
146097395-146258557 F +
NCBI
AC116544.1
146258558-146368744 F +
NCBI
AC092990.4
146368745-146430350 F +
NCBI
AC108699.3
146430351-146579926 F +
NCBI
AC069066.22
146579927-146640441 F +
NCBI
AC108745.7
146640442-146706738 F +
NCBI
AC092956.5
146706739-146899244 F -
NCBI
AC092957.6
146899245-147058825 F -
NCBI
AC092959.6
147058826-147100000 F -
NCBI