bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0080241
HIT000299621
(
CR620426
)
(Similar to Tubulin alpha-8 chain; Alpha-tubulin 8; Tubulin alpha chain-like 2;)
genome : 18,593,242 - 18,629,275 (36,034)
query : 1 - 2,247 (2,247/2,247)
7 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005198 : Molecular Function : structural molecule activity
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0007017 : Biological Process : microtubule-based process
0007018 : Biological Process : microtubule-based movement
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 11, cyto 8, plas 5, E.R. 4, cyto_golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0080241)
HIX0021620
pHIT000096171 ( pHIT000096171 )
(Similar to Ubl carboxyl-terminal hydrolase 18; EC=3.4.19.-; 43 kDa ISG15-specific protease; hUBP43; ISG15-specific-processing protease; Ubl thiolesterase 18;)
genome : 18,632,343 - 18,659,584 (27,242)
query : 1 - 1,044 (1,044/1,044)
10 exons
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, cyto_mito 13.5, cyto 11, cyto_nucl 8,
cyto_pero 7.66667, nucl 3.5
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
CAGE tag :
H05BE88M1910,H05BF07J2409,H21BA94O1212
H21BB03B0902,H21BB39J0910
HIX0021620
HIT000102933 (
ENST00000215794
)
(Ubl carboxyl-terminal hydrolase 18.)
genome : 18,632,758 - 18,660,164 (27,407)
query : 1 - 2,037 (2,037/2,037)
11 exons
identity = 0.998
5'(0.987;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10.5, cyto 9.5, nucl 8.5, cyto_mito 8.5,
extr 7, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000206378 (
NM_017414
)
(Ubl carboxyl-terminal hydrolase 18.)
genome : 18,632,758 - 18,660,164 (27,407)
query : 1 - 2,037 (2,037/2,037)
11 exons
identity = 0.998
5'(0.987;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000245533
(
AJ243526
)
(Ubl carboxyl-terminal hydrolase 18; EC=3.4.19.-; 43 kDa ISG15-specific protease; hUBP43; ISG15-specific-processing protease; Ubl thiolesterase 18;)
genome : 18,632,932 - 18,660,158 (27,227)
query : 40 - 1,895 (1,856/1,924)
11 exons
identity = 0.995
5'(0.952;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;0.985;1.000;0.995)3'
coverage = 0.977
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto 9, cyto_nucl 8.5, nucl 6, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000025286
(
AL136690
)
Representative transcript
(Ubl carboxyl-terminal hydrolase 18.)
genome : 18,632,937 - 18,660,161 (27,225)
query : 1 - 1,855 (1,855/1,874)
11 exons
identity = 0.997
5'(0.947;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB045996
Mus
sp. (Mouse) : AK151011
Bos
sp. (Cow) : BC149487
Gallus
sp. (Chicken) : CR354286
Pongo
sp. (Orangutan) : ENSPPYT00000023278
Pan
sp. (Chimpanzee) : XM_001164261
Monodelphis
sp. (Opossum) : XM_001374110
Equus
sp. (Horse) : XM_001489129
Canis
sp. (Dog) : XM_543890
HIX0021620
HIT000432251
(
AK313385
)
(Ubl carboxyl-terminal hydrolase 18.)
genome : 18,632,937 - 18,659,584 (26,648)
query : 1 - 1,278 (1,278/1,278)
11 exons
identity = 0.996
5'(0.947;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000036888
(
BC014896
)
(Ubl carboxyl-terminal hydrolase 18.)
genome : 18,632,952 - 18,660,161 (27,210)
query : 1 - 1,840 (1,840/1,855)
11 exons
identity = 0.997
5'(0.929;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000283615
(
CR604420
)
(Ubl carboxyl-terminal hydrolase 18.)
genome : 18,640,327 - 18,660,131 (19,805)
query : 1 - 1,770 (1,770/1,770)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000340861
(
CT841507
)
(Ubl carboxyl-terminal hydrolase 18.)
genome : 18,640,365 - 18,659,650 (19,286)
query : 1 - 1,251 (1,251/1,251)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000072659
(
AF176642
)
(Ubl carboxyl-terminal hydrolase 18.)
genome : 18,640,422 - 18,660,164 (19,743)
query : 12 - 1,719 (1,708/1,724)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000539617 (
ENST00000441683
)
(Similar to Ubl carboxyl-terminal hydrolase 18; EC=3.4.19.-; 43 kDa ISG15-specific protease; hUBP43; ISG15-specific-processing protease; Ubl thiolesterase 18;)
genome : 18,640,420 - 18,659,584 (19,165)
query : 1 - 1,130 (1,130/1,130)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000099755
(
BT006835
)
(Ubl carboxyl-terminal hydrolase 18.)
genome : 18,640,431 - 18,659,583 (19,153)
query : 1 - 1,118 (1,118/1,119)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000268066
(
CR457216
)
(Ubl carboxyl-terminal hydrolase 18; EC=3.4.19.-; 43 kDa ISG15-specific protease; hUBP43; ISG15-specific-processing protease; Ubl thiolesterase 18;)
genome : 18,640,431 - 18,659,584 (19,154)
query : 1 - 1,119 (1,119/1,119)
10 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.993;0.990;1.000;
1.000;1.000;0.978)3'
coverage = 1.000
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 9, cyto_nucl 8, nucl 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0021620
HIT000574689_01 (
ENST00000470202
)
(Similar to Ubl carboxyl-terminal hydrolase 18; EC=3.4.19.-; 43 kDa ISG15-specific protease; hUBP43; ISG15-specific-processing protease; Ubl thiolesterase 18;)
genome : 18,655,917 - 18,656,609 (693)
query : 1 - 182 (182/182)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
HIX0175482
HIT000447623_15
(
DQ581092
)
Representative transcript
(Non-protein coding transcript.)
genome : 18,657,444 - 18,657,473 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0175482)
HIX0197172
HIT000532324 (
ENST00000434390
)
(Ret-finger protein-like 3 antisense family protein.)
genome : 18,660,805 - 18,688,682 (27,878)
query : 1 - 1,859 (1,859/1,859)
9 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019524 : Ret-finger protein-like 3 antisense
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 11, extr 8, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0197172)
HIX0197172
HIT000048838_03
(
AK129567
)
Representative transcript
(Ret-finger protein-like 3 antisense family protein.)
genome : 18,660,805 - 18,685,242 (24,438)
query : 1 - 1,859 (1,859/1,859)
9 exons
identity = 0.995
3'(0.998;0.999)5'
coverage = 1.000
InterPro :
IPR019524 : Ret-finger protein-like 3 antisense
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, extr 7, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0197172)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : XM_001163247
HIX0021620
pHIT000096171 ( pHIT000096171 )
(Similar to Ubl carboxyl-terminal hydrolase 18; EC=3.4.19.-; 43 kDa ISG15-specific protease; hUBP43; ISG15-specific-processing protease; Ubl thiolesterase 18;)
genome : 18,632,343 - 18,659,584 (27,242)
query : 1 - 1,044 (1,044/1,044)
10 exons
InterPro :
IPR001394 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
IPR018200 : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
GO :
0004221 : Molecular Function : ubiquitin thiolesterase activity
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, cyto_mito 13.5, cyto 11, cyto_nucl 8,
cyto_pero 7.66667, nucl 3.5
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021620)
CAGE tag :
H05BE88M1910,H05BF07J2409,H21BA94O1212
H21BB03B0902,H21BB39J0910
AC008079.24
18626253-18666252 F +
NCBI