bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0225366
HIT000696350 (
ENST00000584482
)
(Conserved hypothetical protein.)
genome : 27,098,224 - 27,118,358 (20,135)
query : 1 - 739 (739/739)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225366)
HIX0225366
HIT000693435 (
ENST00000581532
)
(Hypothetical short protein.)
genome : 27,108,268 - 27,128,206 (19,939)
query : 1 - 557 (557/557)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225366)
HIX0212730
HIT000658598 (
NR_031684
)
(Non-protein coding transcript.)
genome : 27,878,876 - 27,878,926 (51)
query : 1 - 51 (51/51)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212730)
HIX0225611
HIT000694970 (
ENST00000583089
)
(Conserved hypothetical protein.)
genome : 28,293,241 - 28,294,252 (1,012)
query : 1 - 572 (572/572)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12.5, cyto 10, extr_plas 8.5, mito 5,
cyto_nucl 5, cyto_pero 5, cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225611)
HIX0225624
HIT000695461 (
ENST00000583580
)
(Conserved hypothetical protein.)
genome : 28,534,786 - 28,560,883 (26,098)
query : 1 - 387 (387/387)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 10, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225624)
HIX0017967
HIT000313812 (
ENST00000360428
)
(Desmocollin-3; Cadherin family member 3; Desmocollin-4; HT-CP; Precursor;)
genome : 28,569,974 - 28,622,707 (52,734)
query : 1 - 6,939 (6,939/6,939)
16 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, lyso 8, pero 6, golg 6, E.R. 4, extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
HIX0017967
HIT000003574
(
AK001100
)
(Conserved hypothetical protein.)
genome : 28,569,974 - 28,571,899 (1,926)
query : 204 - 2,132 (1,929/2,132)
1 exon
identity = 0.992
3'(0.992)5'
coverage = 0.905
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 7, mito 5, plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
HIX0017967
HIT000198871 (
NM_001941
)
(Desmocollin-3; Cadherin family member 3; Desmocollin-4; HT-CP; Precursor;)
genome : 28,570,052 - 28,622,781 (52,730)
query : 1 - 6,935 (6,935/6,935)
16 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, lyso 8, pero 6, golg 6, E.R. 4, extr_plas 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
HIX0017967
HIT000209208 (
NM_024423
)
(Desmocollin-3; Cadherin family member 3; Desmocollin-4; HT-CP; Precursor;)
genome : 28,570,052 - 28,622,781 (52,730)
query : 1 - 6,978 (6,978/6,978)
17 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
lyso 10, extr 9, E.R. 5, pero 4, golg 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
HIX0017967
HIT000532386 (
ENST00000434452
)
(Desmocollin-3; Cadherin family member 3; Desmocollin-4; HT-CP; Precursor;)
genome : 28,570,052 - 28,622,781 (52,730)
query : 1 - 6,978 (6,978/6,978)
17 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
lyso 10, extr 9, E.R. 5, pero 4, golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
HIX0017967
HIT000015255
(
AK074475
)
(Conserved hypothetical protein.)
genome : 28,570,345 - 28,572,701 (2,357)
query : 1 - 2,357 (2,357/2,376)
1 exon
identity = 0.993
3'(0.993)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, extr 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
HIX0017967
HIT000076603
(
AF297090
)
(Desmocollin-3; Cadherin family member 3; Desmocollin-4; HT-CP; Precursor;)
genome : 28,571,031 - 28,587,014 (15,984)
query : 9 - 4,059 (4,051/4,078)
5 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;0.993)5'
coverage = 1.000
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR002126 : Cadherin
IPR009122 : Desmosomal cadherin
IPR015919 : Cadherin-like
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, nucl 7, cyto_mito 7, plas 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
HIX0017967
HIT000101070
(
D17427
)
Representative transcript
(Desmocollin-3; Cadherin family member 3; Desmocollin-4; HT-CP; Precursor;)
genome : 28,573,345 - 28,622,689 (49,345)
query : 6 - 3,552 (3,547/3,552)
16 exons
identity = 0.997
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR002126 : Cadherin
IPR009122 : Desmosomal cadherin
IPR014868 : Cadherin prodomain
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, lyso 8, pero 6, golg 6, E.R. 4, extr_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : BC124676
Canis
sp. (Dog) : ENSCAFT00000028743
Equus
sp. (Horse) : ENSECAT00000024176
Macaca
sp. (Macaque) : ENSMMUT00000010742
Oryzias
sp. (Medaka) : ENSORLT00000021407
Pongo
sp. (Orangutan) : ENSPPYT00000010603
Bos
sp. (Cow) : L33774
Rattus
sp. (Rat) : XM_001053804
Monodelphis
sp. (Opossum) : XM_001380473
Gallus
sp. (Chicken) : XM_426081
Pan
sp. (Chimpanzee) : XM_512076
Mus
sp. (Mouse) : Y11169
HIX0017967
HIT000324013
(
X83929
)
(Desmocollin-3; Cadherin family member 3; Desmocollin-4; HT-CP; Precursor;)
genome : 28,573,569 - 28,622,642 (49,074)
query : 6 - 3,282 (3,277/3,299)
16 exons
identity = 0.996
3'(0.996;0.996;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.993
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR002126 : Cadherin
IPR009122 : Desmosomal cadherin
IPR014868 : Cadherin prodomain
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, golg 8, lyso 7, E.R. 5, pero 4, extr_plas 4,
cyto_golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
HIX0017967
HIT000424545
(
AK291748
)
(Desmocollin-3; Cadherin family member 3; Desmocollin-4; HT-CP; Precursor;)
genome : 28,573,769 - 28,622,707 (48,939)
query : 1 - 3,144 (3,144/3,144)
16 exons
identity = 0.996
3'(1.000;1.000;1.000;1.000;0.996;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR002126 : Cadherin
IPR009122 : Desmosomal cadherin
IPR014868 : Cadherin prodomain
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, lyso 8, pero 6, golg 6, E.R. 4, extr_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
HIX0017967
HIT000696842 (
ENST00000584980
)
(Desmocollin-3; Cadherin family member 3; Desmocollin-4; HT-CP; Precursor;)
genome : 28,574,092 - 28,584,333 (10,242)
query : 12 - 907 (896/907)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.988
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 8.5, plas 8, mito 5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017967)
AC074237.4
27000001-27030596 F -
NCBI
AC091321.8
27030597-27073754 F -
NCBI
AC117569.3
27073755-27240341 F +
NCBI
AC025018.6
27240342-27322528 F +
NCBI
AC084701.5
27322529-27440936 F -
NCBI
AC013660.9
27440937-27509890 F +
NCBI
AC107878.2
27509891-27652340 F +
NCBI
AC103727.2
27652341-27791219 F -
NCBI
AC091143.6
27791220-27862933 F +
NCBI
AC115100.3
27862934-27965815 F +
NCBI
AC091317.3
27965816-27998574 F -
NCBI
AC015766.9
27998575-28126963 F -
NCBI
AC022174.6
28126964-28251650 F -
NCBI
AC090506.7
28251651-28414167 F -
NCBI
AC016382.8
28414168-28558964 F -
NCBI
AC025212.5
28558965-28600000 F +
NCBI