bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0039175
HIT000117845 (
ENST00000308078
)
genome : 34,580,902 - 34,757,050 (176,149)
query : 1 - 2,305 (2,305/2,305)
14 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039175)
HIX0039175
HIT000264504_02
(
BC071680
)
genome : 34,581,085 - 34,756,993 (175,909)
query : 1 - 2,065 (2,065/2,090)
14 exons
identity = 0.999
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039175)
HIX0173540
HIT000395978_05 (
ENST00000389068
)
(Similar to C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,639,876 - 34,641,614 (1,739)
query : 1 - 475 (475/475)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 11, cyto_nucl 9.33333, cyto 5.5,
cyto_pero 3.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000503201_02
(
BC146944
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,639,876 - 34,641,614 (1,739)
query : 1 - 590 (590/590)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000503214_02
(
BC146958
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,639,876 - 34,641,614 (1,739)
query : 1 - 590 (590/590)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000503588_02
(
BC171857
)
(C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,639,876 - 34,641,614 (1,739)
query : 1 - 590 (590/590)
3 exons
identity = 0.998
5'(1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000503595_02
(
BC171864
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,639,876 - 34,641,614 (1,739)
query : 1 - 590 (590/590)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000542348_02 (
ENST00000444414
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,639,876 - 34,641,614 (1,739)
query : 1 - 590 (590/590)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000312415_05 (
ENST00000358756
)
(Similar to Uncharacterized protein;)
genome : 34,639,876 - 34,641,537 (1,662)
query : 1 - 498 (498/498)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 11, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000359622_05 (
ENST00000378342
)
(Similar to C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,639,876 - 34,641,537 (1,662)
query : 1 - 498 (498/498)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000359632_05 (
ENST00000378352
)
(Similar to C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,639,876 - 34,641,537 (1,662)
query : 1 - 513 (513/513)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000314310_05 (
ENST00000361022
)
(Similar to C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,639,876 - 34,641,531 (1,656)
query : 1 - 510 (510/510)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000636007_02 (
ENST00000536962
)
(Similar to C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,639,876 - 34,641,531 (1,656)
query : 1 - 510 (510/510)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000477874_05 (
ENST00000394463
)
(Similar to C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,639,876 - 34,641,401 (1,526)
query : 1 - 495 (495/495)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 9.66667, cyto 7,
extr_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000131900_05 (
ENST00000339270
)
(C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,640,031 - 34,641,846 (1,816)
query : 1 - 552 (552/552)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000332279_05
(
AY766447
)
Representative transcript
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,640,031 - 34,641,846 (1,816)
query : 1 - 667 (667/667)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : EF121996
Pongo
sp. (Orangutan) : ENSPPYT00000010467
Mus
sp. (Mouse) : M23503
Monodelphis
sp. (Opossum) : XM_001367439
HIX0173540
HIT000332281_05
(
AY766449
)
(C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,640,031 - 34,641,846 (1,816)
query : 1 - 552 (552/552)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000332282_05
(
AY766450
)
(C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,640,031 - 34,641,846 (1,816)
query : 1 - 652 (652/652)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000332288_05
(
AY766456
)
(C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,640,031 - 34,641,846 (1,816)
query : 1 - 537 (537/537)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000477876_05 (
ENST00000394465
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,640,031 - 34,641,846 (1,816)
query : 1 - 667 (667/667)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 5, nucl 4, cyto 2, golg 2, cyto_golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000264268_05
(
BC070310
)
(C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,640,034 - 34,641,839 (1,806)
query : 1 - 657 (657/685)
3 exons
identity = 0.995
5'(0.993;0.991;0.997)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000320247_05 (
NM_207007
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,640,034 - 34,641,839 (1,806)
query : 1 - 657 (657/685)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000315389_05 (
NM_001001435
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,640,034 - 34,641,839 (1,806)
query : 1 - 657 (657/674)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000634718_02 (
ENST00000535673
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,640,034 - 34,641,838 (1,805)
query : 1 - 656 (656/656)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000586055 (
ENST00000482104
)
(C-C motif chemokine 4-like; Lymphocyte activation gene 1 protein; LAG-1; Macrophage inflammatory protein 1-beta; MIP-1-beta; Monocyte adherence-induced protein 5-alpha; Small-inducible cytokine A4-like; Precursor;)
genome : 34,640,034 - 34,641,769 (1,736)
query : 1 - 776 (776/776)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000264539_03
(
BC071718
)
(Similar to C-C motif chemokine 4; G-26 T-lymphocyte-secreted protein; HC21; Lymphocyte activation gene 1 protein; LAG-1; MIP-1-beta(1-69); Macrophage inflammatory protein 1-beta; MIP-1-beta; PAT 744; Protein H400; SIS-gamma; Small-inducible cytokine A4; T-cell activation protein 2; ACT-2; Contains: MIP-1-beta(3-69); Precursor;)
genome : 34,640,056 - 34,641,832 (1,777)
query : 1 - 1,777 (1,777/1,801)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, cyto_nucl 17.5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000390246_05
(
BC130456
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,640,069 - 34,641,607 (1,539)
query : 1 - 390 (390/390)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000390248_05
(
BC130458
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,640,069 - 34,641,607 (1,539)
query : 1 - 390 (390/390)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000502805_02
(
BC144393
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,640,069 - 34,641,607 (1,539)
query : 1 - 390 (390/390)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
HIX0173540
HIT000502806_02
(
BC144394
)
(Chemokine (C-C motif) ligand 4-like 2 precursor.)
genome : 34,640,069 - 34,641,606 (1,538)
query : 1 - 389 (389/389)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000827 : CC chemokine, conserved site
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173540)
AC131056.5
34632861-34648860 F -
NCBI
(TA)n
AluSx
MIRb
LTR61
MIR3
L2c
L2c
L1PA15
(TA)n
L1PA15
AluJb
MIRb
MIR3
L3
MIRb
MIR
MIRb
MIR3
MER3
MLT1D
MIR3
MER2
AluJo
MER2
MLT2A1
MLT2A1
(TA)n
Ricksha_c
HERVL-int