bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0012672
HIT000121146 (
ENST00000317063
)
(Protein CTF18 homolog.;)
genome : 838,046 - 847,975 (9,930)
query : 1 - 3,555 (3,555/3,555)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR003593 : ATPase, AAA+ type, core
IPR003959 : ATPase, AAA-type, core
GO :
0000166 : Molecular Function : nucleotide binding
0005524 : Molecular Function : ATP binding
0017111 : Molecular Function : nucleoside-triphosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, nucl 9.5, cyto_nucl 6.5, plas 3, cyto 2.5,
E.R. 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000208593 (
NM_022092
)
(Chromosome transmission fidelity protein 18 homolog.)
genome : 838,622 - 848,074 (9,453)
query : 1 - 3,090 (3,090/3,096)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR003593 : ATPase, AAA+ type, core
IPR003959 : ATPase, AAA-type, core
GO :
0000166 : Molecular Function : nucleotide binding
0005524 : Molecular Function : ATP binding
0017111 : Molecular Function : nucleoside-triphosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9.5, nucl 6.5, E.R. 6, pero 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000108351 (
ENST00000262315
)
(Chromosome transmission fidelity protein 18 homolog.)
genome : 838,622 - 848,072 (9,451)
query : 1 - 3,088 (3,088/3,088)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000048742
(
AK128869
)
(Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;)
genome : 838,622 - 848,063 (9,442)
query : 1 - 4,088 (4,088/4,088)
18 exons
identity = 1.000
5'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 7, pero 5, plas 4, mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000569458 (
ENST00000464728
)
(Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;)
genome : 838,622 - 848,063 (9,442)
query : 1 - 4,088 (4,088/4,088)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 7, pero 5, plas 4, mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000428670
(
AK309804
)
(Similar to Protein CTF18 homolog.;)
genome : 838,625 - 843,190 (4,566)
query : 1 - 1,801 (1,801/1,801)
14 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003959 : ATPase, AAA-type, core
GO :
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 16, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000538173 (
ENST00000440239
)
(Similar to Protein CTF18 homolog.;)
genome : 838,625 - 843,190 (4,566)
query : 1 - 1,801 (1,801/1,801)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003959 : ATPase, AAA-type, core
GO :
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 16, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000007750
(
AK024476
)
(Similar to Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;)
genome : 838,635 - 848,072 (9,438)
query : 1 - 4,494 (4,494/4,494)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, E.R. 6, mito_pero 5.5, pero 4.5, extr 4,
mito 3.5, nucl 3, E.R._golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000575642 (
ENST00000471202
)
(Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;)
genome : 838,635 - 848,072 (9,438)
query : 1 - 4,494 (4,494/4,494)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 10, nucl 7.5, E.R. 5, pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000086664
(
BC006437
)
(Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;)
genome : 838,646 - 848,073 (9,428)
query : 1 - 3,149 (3,149/3,166)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003593 : ATPase, AAA+ type, core
IPR003959 : ATPase, AAA-type, core
GO :
0000166 : Molecular Function : nucleotide binding
0005524 : Molecular Function : ATP binding
0017111 : Molecular Function : nucleoside-triphosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9.5, nucl 6.5, E.R. 6, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000553105 (
ENST00000455171
)
(Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;)
genome : 838,646 - 848,074 (9,429)
query : 1 - 3,150 (3,150/3,150)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003593 : ATPase, AAA+ type, core
IPR003959 : ATPase, AAA-type, core
GO :
0000166 : Molecular Function : nucleotide binding
0005524 : Molecular Function : ATP binding
0017111 : Molecular Function : nucleoside-triphosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9.5, nucl 6.5, E.R. 6, pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000038306
(
BC018184
)
Representative transcript
(Chromosome transmission fidelity protein 18 homolog.)
genome : 838,647 - 848,073 (9,427)
query : 1 - 3,064 (3,064/3,098)
22 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.979)3'
coverage = 1.000
InterPro :
IPR003593 : ATPase, AAA+ type, core
IPR003959 : ATPase, AAA-type, core
GO :
0000166 : Molecular Function : nucleotide binding
0005524 : Molecular Function : ATP binding
0017111 : Molecular Function : nucleoside-triphosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9.5, nucl 6.5, E.R. 6, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ721014
Mus
sp. (Mouse) : BC024142
Danio
sp. (Zebrafish) : BC154157
Canis
sp. (Dog) : ENSCAFT00000031175
Monodelphis
sp. (Opossum) : ENSMODT00000021451
Oryzias
sp. (Medaka) : ENSORLT00000011025
Pongo
sp. (Orangutan) : ENSPPYT00000008179
Pan
sp. (Chimpanzee) : ENSPTRT00000043781
Tetraodon
sp. (Tetraodon) : GSTENT00008082001
Takifugu
sp. (Fugu) : SINFRUT00000129816
Rattus
sp. (Rat) : XM_001060640
Macaca
sp. (Macaque) : XM_001087813
Equus
sp. (Horse) : XM_001497323
Bos
sp. (Cow) : XM_595170
HIX0012672
HIT000086630
(
BC006278
)
(Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;)
genome : 838,655 - 848,073 (9,419)
query : 1 - 3,056 (3,056/3,077)
22 exons
identity = 0.998
5'(1.000;1.000;0.993;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;0.983;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9.5, nucl 6.5, E.R. 6, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000566163 (
ENST00000461268
)
(Similar to Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;)
genome : 842,524 - 845,720 (3,197)
query : 1 - 814 (814/814)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 5, cyto_nucl 4.83333, cyto 4.5,
cyto_pero 4.16667, mito_nucl 4.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000597144 (
ENST00000493715
)
(Similar to Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;)
genome : 844,702 - 846,758 (2,057)
query : 1 - 691 (691/691)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 7, extr_plas 7, mito_pero 6.5,
E.R._mito 6, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0012672
HIT000601661 (
ENST00000498439
)
(Similar to Chromosome transmission fidelity protein 18 homolog; hCTF18; CHL12;)
genome : 846,615 - 848,074 (1,460)
query : 1 - 673 (673/673)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, nucl 9, extr 8, cyto 7, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012672)
HIX0202319
HIT000206218 (
NM_016541
)
(Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13 precursor.)
genome : 848,041 - 850,733 (2,693)
query : 1 - 984 (984/1,001)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001770 : G-protein, gamma subunit
IPR015898 : G-protein gamma domain
GO :
0004871 : Molecular Function : signal transducer activity
0005834 : Cellular Component : heterotrimeric G-protein complex
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 5, mito 5, nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202319)
HIX0202319
HIT000058988
(
AB030207
)
Representative transcript
(Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13 precursor.)
genome : 848,041 - 850,699 (2,659)
query : 14 - 963 (950/980)
3 exons
identity = 0.999
3'(1.000;0.992;1.000)5'
coverage = 0.987
InterPro :
IPR001770 : G-protein, gamma subunit
IPR015898 : G-protein gamma domain
GO :
0004871 : Molecular Function : signal transducer activity
0005834 : Cellular Component : heterotrimeric G-protein complex
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 5, mito 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202319)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AY029485
Danio
sp. (Zebrafish) : BC076184
Gallus
sp. (Chicken) : BX932165
Tetraodon
sp. (Tetraodon) : CR683494
Equus
sp. (Horse) : ENSECAT00000019293
Macaca
sp. (Macaque) : ENSMMUT00000001212
Oryzias
sp. (Medaka) : ENSORLT00000010988
Pongo
sp. (Orangutan) : ENSPPYT00000008180
Pan
sp. (Chimpanzee) : XM_001172071
Monodelphis
sp. (Opossum) : XM_001365942
Bos
sp. (Cow) : XM_595169
Canis
sp. (Dog) : XM_849007
HIX0202319
HIT000083340
(
AY029486
)
(Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13 precursor.)
genome : 848,042 - 850,699 (2,658)
query : 1 - 949 (949/949)
3 exons
identity = 0.999
3'(1.000;0.992;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 5, mito 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202319)
HIX0202319
HIT000105842 (
ENST00000248150
)
(Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13 precursor.)
genome : 848,044 - 850,733 (2,690)
query : 1 - 981 (981/981)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, extr 2, golg 2, cyto 1.5, cyto_nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202319)
HIX0202319
HIT000334735
(
BC093760
)
(Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13 precursor.)
genome : 848,679 - 849,110 (432)
query : 1 - 277 (277/277)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001770 : G-protein, gamma subunit
IPR015898 : G-protein gamma domain
GO :
0004871 : Molecular Function : signal transducer activity
0005834 : Cellular Component : heterotrimeric G-protein complex
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 5, mito 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202319)
HIX0202319
pHIT000114953 ( pHIT000114953 )
(Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13; Precursor;)
genome : 848,719 - 874,719 (26,001)
query : 1 - 288 (288/288)
3 exons
InterPro :
IPR015898 : G-protein gamma domain
GO :
0004871 : Molecular Function : signal transducer activity
0005834 : Cellular Component : heterotrimeric G-protein complex
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 12.5, nucl 8, mito 7
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202319)
CAGE tag :
T16F000AF105
HIX0202319
HIT000431005
(
AK312139
)
(Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13 precursor.)
genome : 848,719 - 850,733 (2,015)
query : 2 - 307 (306/307)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.997
InterPro :
IPR001770 : G-protein, gamma subunit
IPR015898 : G-protein gamma domain
GO :
0004871 : Molecular Function : signal transducer activity
0005834 : Cellular Component : heterotrimeric G-protein complex
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 5, mito 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202319)
HIX0202319
HIT000335318
(
BC095525
)
(Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13 precursor.)
genome : 848,719 - 849,079 (361)
query : 2 - 207 (206/207)
2 exons
identity = 0.990
3'(1.000;0.980)5'
coverage = 0.995
InterPro :
IPR001770 : G-protein, gamma subunit
IPR015898 : G-protein gamma domain
GO :
0004871 : Molecular Function : signal transducer activity
0005834 : Cellular Component : heterotrimeric G-protein complex
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 5, mito 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202319)
HIX0202319
HIT000080728
(
AF493880
)
(Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13 precursor.)
genome : 848,719 - 849,077 (359)
query : 1 - 204 (204/204)
2 exons
identity = 0.990
3'(1.000;0.980)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 5, mito 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202319)
HIX0038934
HIT000115934 (
ENST00000301698
)
(Conserved hypothetical protein.)
genome : 855,443 - 863,861 (8,419)
query : 1 - 1,209 (1,209/1,209)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 12, cyto 7.5, extr 4, mito 2,
pero 2, extr_plas 2, mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038934)
HIX0038934
HIT000365270 (
NM_001013638
)
Representative transcript
(Conserved hypothetical protein.)
genome : 855,443 - 863,861 (8,419)
query : 1 - 1,209 (1,209/1,209)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 12, cyto 7.5, extr 4, mito 2,
pero 2, extr_plas 2, mito_pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038934)
HIX0202319
pHIT000114953 ( pHIT000114953 )
(Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13; Precursor;)
genome : 848,719 - 874,719 (26,001)
query : 1 - 288 (288/288)
3 exons
InterPro :
IPR015898 : G-protein gamma domain
GO :
0004871 : Molecular Function : signal transducer activity
0005834 : Cellular Component : heterotrimeric G-protein complex
0007186 : Biological Process : G-protein coupled receptor protein signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 12.5, nucl 8, mito 7
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202319)
CAGE tag :
T16F000AF105
AL031033.5
841380-860087 F +
NCBI
AL023882.4
860088-881379 F +
NCBI