Clickable map CGI

HIX0013025
pHIT000115660 ( pHIT000115660 )
  (Similar to Protein naked cuticle homolog 1; Naked-1; hNkd; hNkd1;)
  genome : 50,576,109 - 50,613,903 (37,795)
  query : 1 - 1,368 (1,368/1,368)
  3 exons
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 10.5, cyto_nucl 10.5, nucl 9.5, extr 8
  JIGSAW prediction
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013025)
  CAGE tag :
    T16F02ED2A72

HIX0013025
HIT000076413 ( AF289584 )
  (Protein naked cuticle homolog 1; Naked-1; hNkd; hNkd1;)
  genome : 50,582,253 - 50,668,128 (85,876)
  query : 62 - 2,125 (2,064/2,142)
  10 exons
  identity = 0.995
  5'(0.967;0.939;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;0.999)3'
  coverage = 0.971
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 19, cyto 11.5, cyto_golg 6.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013025)

HIX0013025
HIT000211144 ( NM_033119 )
  (Protein naked cuticle homolog 1.)
  genome : 50,582,241 - 50,674,771 (92,531)
  query : 1 - 8,716 (8,716/8,716)
  10 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR011992 : EF-hand-like domain
    IPR018247 : EF-Hand 1, calcium-binding site
    IPR018249 : EF-HAND 2
  GO :
    0005509 : Molecular Function : calcium ion binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 15.5, cyto_nucl 11, mito 10, cyto 5.5,
    mito_pero 5.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013025)

HIX0013025
HIT000110294 ( ENST00000268459 )
  (Protein naked cuticle homolog 1.)
  genome : 50,582,241 - 50,668,641 (86,401)
  query : 1 - 2,586 (2,586/2,586)
  10 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 15.5, cyto_nucl 11, mito 10, cyto 5.5,
    mito_pero 5.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013025)

HIX0013025
HIT000084039 ( AY061883 )
  (Protein naked cuticle homolog 1.)
  genome : 50,582,307 - 50,667,884 (85,578)
  query : 1 - 1,763 (1,763/1,786)
  10 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)3'
  coverage = 0.999
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 15.5, cyto_nucl 11, mito 10, cyto 5.5,
    mito_pero 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013025)

HIX0013025
HIT000433796 ( AK314930 )
  (Protein naked cuticle homolog 1.)
  genome : 50,582,307 - 50,667,692 (85,386)
  query : 1 - 1,571 (1,571/1,571)
  10 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR011992 : EF-hand-like domain
    IPR018247 : EF-Hand 1, calcium-binding site
    IPR018249 : EF-HAND 2
  GO :
    0005509 : Molecular Function : calcium ion binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 15.5, cyto_nucl 11, mito 10, cyto 5.5,
    mito_pero 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013025)

HIX0013025
HIT000078319 ( AF358135 )
  (Protein naked cuticle homolog 1.)
  genome : 50,582,458 - 50,667,710 (85,253)
  query : 1 - 1,438 (1,438/1,438)
  10 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 15.5, cyto_nucl 11, mito 10, cyto 5.5,
    mito_pero 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013025)

HIX0013025
HIT000059931 ( AB062886 )
  (Protein naked cuticle homolog 1.)
  genome : 50,582,460 - 50,668,062 (85,603)
  query : 1 - 1,788 (1,788/1,788)
  10 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR011992 : EF-hand-like domain
    IPR018247 : EF-Hand 1, calcium-binding site
    IPR018249 : EF-HAND 2
  GO :
    0005509 : Molecular Function : calcium ion binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 15.5, cyto_nucl 11, mito 10, cyto 5.5,
    mito_pero 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013025)

HIX0027062
HIT000048401 ( AK128528 )
  Representative transcript
  (Hypothetical protein.)
  genome : 50,589,266 - 50,592,630 (3,365)
  query : 1 - 3,364 (3,364/3,364)
  1 exon
  identity = 0.999
  5'(0.999)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 18, cyto_nucl 9, extr_plas 9, cyto 7.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027062)

HIX0027004
HIT000044248 ( AK124375 )
  Representative transcript
  (Similar to Protein naked cuticle homolog 1; Naked-1; hNkd; hNkd1;)
  genome : 50,639,987 - 50,647,595 (7,609)
  query : 1 - 2,469 (2,469/2,469)
  2 exons
  identity = 0.999
  3'(0.999;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 14, cyto_mito 7.66667, cyto 7, extr_plas 7,
    cyto_nucl 7, mito 6.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027004)
  Ortholog candidate  ( -> Evola )
    Pongo sp. (Orangutan) : ENSPPYT00000008631
    Pan sp. (Chimpanzee) : ENSPTRT00000060238

HIX0027004
HIT000361242 ( ENST00000379963 )
  (Similar to Protein naked cuticle homolog 1; Naked-1; hNkd; hNkd1;)
  genome : 50,639,987 - 50,647,595 (7,609)
  query : 1 - 2,469 (2,469/2,469)
  2 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 14, cyto_mito 7.66667, cyto 7, extr_plas 7,
    cyto_nucl 7, mito 6.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027004)

HIX0013025
HIT000002751 ( AK000276 )
  (Hypothetical protein.)
  genome : 50,668,486 - 50,670,643 (2,158)
  query : 1 - 2,158 (2,158/2,175)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 19, nucl 6, cyto_nucl 5.5, cyto 3, mito 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013025)

HIX0013026
HIT000007058 ( AK023784 )
  Representative transcript
  (Hypothetical protein.)
  genome : 50,671,504 - 50,674,651 (3,148)
  query : 1 - 3,149 (3,149/3,149)
  1 exon
  identity = 0.997
  3'(0.997)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto_nucl 13.5, nucl 11.5, cyto 10.5, extr 8
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013026)

HIX0013026
HIT000004975 ( AK021701 )
  (Hypothetical protein.)
  genome : 50,671,779 - 50,674,693 (2,915)
  query : 1 - 2,913 (2,913/2,913)
  1 exon
  identity = 0.998
  3'(0.998)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto_nucl 13.5, nucl 11.5, cyto 10.5, extr 8
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0013026)

HIX0023264
HIT000026171 ( AL161979 )
  (Hypothetical short protein.)
  genome : 50,700,122 - 50,705,489 (5,368)
  query : 1 - 5,214 (5,214/5,234)
  2 exons
  identity = 0.999
  5'(0.999;0.998)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 18, extr 9, mito_nucl 9
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0023264)

HIX0019600
HIT000115663 ( ENST00000300590 )
  (Sorting nexin-20 isoform 2.)
  genome : 50,700,211 - 50,715,264 (15,054)
  query : 1 - 3,304 (3,304/3,304)
  4 exons
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 16, nucl 8.5, cyto_nucl 7.5, cyto 5.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0019600)

HIX0019600
HIT000214297 ( NM_153337 )
  (Sorting nexin-20 isoform 2.)
  genome : 50,700,211 - 50,715,264 (15,054)
  query : 1 - 3,304 (3,304/3,304)
  4 exons
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 16, nucl 8.5, cyto_nucl 7.5, cyto 5.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0019600)

HIX0019600
HIT000520960 ( ENST00000423026 )
  (Sorting nexin-20 isoform 3.)
  genome : 50,700,211 - 50,715,264 (15,054)
  query : 1 - 2,197 (2,197/2,197)
  4 exons
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 17, nucl 6.5, cyto_nucl 6.5, cyto 5.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0019600)

HIX0019600
HIT000561108 ( NM_001144972 )
  (Sorting nexin-20 isoform 3.)
  genome : 50,700,211 - 50,715,264 (15,054)
  query : 1 - 2,197 (2,197/2,197)
  4 exons
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 17, nucl 6.5, cyto_nucl 6.5, cyto 5.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0019600)

HIX0019600
HIT000012451 ( AK055837 )
  (Sorting nexin-20 isoform 2.)
  genome : 50,700,211 - 50,715,229 (15,019)
  query : 1 - 3,270 (3,270/3,270)
  4 exons
  identity = 0.998
  3'(0.999)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 16, nucl 8.5, cyto_nucl 7.5, cyto 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0019600)

HIX0019600
HIT000260883 ( BC063423 )
  (Sorting nexin-20 isoform 3.)
  genome : 50,700,474 - 50,715,205 (14,732)
  query : 1 - 1,876 (1,876/2,000)
  4 exons
  identity = 0.998
  3'(0.998)5'
  coverage = 0.999
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 17, nucl 6.5, cyto_nucl 6.5, cyto 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0019600)

HIX0019600
HIT000050928 ( BC027944 )
  (Sorting nexin-20 isoform 2.)
  genome : 50,700,469 - 50,715,213 (14,745)
  query : 1 - 2,003 (2,003/2,027)
  5 exons
  identity = 1.000
  3'(0.997;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 16, nucl 8.5, cyto_nucl 7.5, cyto 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0019600)

HIX0019600
HIT000425447 ( AK292650 )
  (Sorting nexin-20 isoform 3.)
  genome : 50,701,818 - 50,715,223 (13,406)
  query : 1 - 549 (549/549)
  4 exons
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 17, nucl 6.5, cyto_nucl 6.5, cyto 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0019600)

HIX0023264
HIT000071248 ( AF143871 )
  Representative transcript
  (Hypothetical short protein.)
  genome : 50,702,766 - 50,705,550 (2,785)
  query : 11 - 1,118 (1,108/1,138)
  3 exons
  identity = 0.998
  5'(1.000;0.997;0.998)3'
  coverage = 0.991
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 23, nucl 5.5, cyto_nucl 5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0023264)

HIX0019600
HIT000425502 ( AK292705 )
  (Sorting nexin-20 isoform 2.)
  genome : 50,702,860 - 50,715,229 (12,370)
  query : 1 - 620 (620/620)
  4 exons
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 16, nucl 8.5, cyto_nucl 7.5, cyto 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0019600)

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )