Clickable map CGI

HIX0017288
HIT000563379 ( NR_027275 )
  (Hypothetical short protein.)
  genome : 2,787,077 - 2,802,601 (15,525)
  query : 1 - 845 (845/845)
  6 exons
  identity = 1.000
  3'(1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 27, mito 3
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0017288)

HIX0017288
HIT000012677 ( AK056063 )
  (Hypothetical short protein.)
  genome : 2,787,077 - 2,800,811 (13,735)
  query : 1 - 1,777 (1,777/1,777)
  4 exons
  identity = 0.997
  3'(1.000;0.995)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 30
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0017288)

HIX0017288
HIT000563378 ( NR_027274 )
  (Hypothetical protein.)
  genome : 2,787,077 - 2,794,798 (7,722)
  query : 1 - 1,371 (1,371/1,371)
  6 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 16, cyto 9.5, cyto_nucl 7.5, nucl 4.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0017288)

HIX0017288
HIT000023456 ( AK098626 )
  (Hypothetical protein.)
  genome : 2,787,104 - 2,794,798 (7,695)
  query : 1 - 1,344 (1,344/1,344)
  6 exons
  identity = 0.999
  3'(0.994;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 9, cyto_nucl 9, nucl 8, cyto 8, mito 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0017288)

HIX0012738
pHIT000026230 ( pHIT000026230 )
  (Hypothetical protein.)
  genome : 2,802,252 - 2,802,506 (255)
  query : 1 - 255 (255/255)
  1 exon
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 13.5, cyto_nucl 11.1667, extr 9, cyto 5.5,
    cyto_mito 5.33333, cyto_pero 3.83333
  JIGSAW prediction
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)
  CAGE tag :
    H04BA15K1006,H04BA52B0204,H04BA76I0607
    H04BA94N2403,H05BA05A0610

HIX0012738
HIT000206059 ( NM_016333 )
  (Serine/arginine repetitive matrix protein 2.)
  genome : 2,802,330 - 2,821,412 (19,083)
  query : 1 - 9,352 (9,352/9,379)
  15 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000115951 ( ENST00000301740 )
  (Serine/arginine repetitive matrix protein 2.)
  genome : 2,802,330 - 2,821,411 (19,082)
  query : 1 - 9,351 (9,351/9,351)
  15 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000363579 ( ENST00000382301 )
  (Similar to Uncharacterized protein;)
  genome : 2,802,330 - 2,821,411 (19,082)
  query : 1 - 8,097 (8,097/8,097)
  16 exons
  identity = 0.999
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;0.983;1.000;1.000;
      1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 29.5, cyto_nucl 16
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000480281 ( ENST00000396975 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,330 - 2,821,358 (19,029)
  query : 1 - 1,773 (1,773/1,773)
  12 exons
  identity = 0.998
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;0.947)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000643978 ( ENST00000544933 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,330 - 2,819,887 (17,558)
  query : 1 - 8,829 (8,829/8,829)
  13 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000264008 ( BC070050 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,627 - 2,813,582 (10,956)
  query : 1 - 3,313 (3,313/3,327)
  11 exons
  identity = 0.999
  5'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 29.5, cyto_nucl 16
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000090192 ( BC020639 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,639 - 2,808,515 (5,877)
  query : 1 - 800 (800/829)
  5 exons
  identity = 0.998
  5'(0.995;1.000;1.000;1.000;0.978)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 23, cyto 7
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000073771 ( AF201422 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,649 - 2,821,412 (18,764)
  query : 1 - 7,768 (7,768/7,789)
  16 exons
  identity = 0.994
  5'(0.990;0.996;1.000;1.000;0.962;1.000;1.000;
      1.000;1.000;0.985;0.999;0.979;0.990;1.000;
      1.000;0.962)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000058466 ( AB016092 )
  Representative transcript
  (Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,654 - 2,821,411 (18,758)
  query : 1 - 9,027 (9,027/9,027)
  15 exons
  identity = 0.999
  5'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;0.999;1.000;1.000;1.000;
      1.000)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)
  Ortholog candidate  ( -> Evola )
    Macaca sp. (Macaque) : AB172628
    Mus sp. (Mouse) : AK090123
    Rattus sp. (Rat) : BC089967
    Bos sp. (Cow) : BC151743
    Canis sp. (Dog) : ENSCAFT00000030745
    Equus sp. (Horse) : ENSECAT00000012108
    Pongo sp. (Orangutan) : ENSPPYT00000008263
    Pan sp. (Chimpanzee) : ENSPTRT00000060415
    Monodelphis sp. (Opossum) : XM_001371513

HIX0012738
HIT000259039 ( BC032416 )
  (Similar to Uncharacterized protein;)
  genome : 2,802,663 - 2,810,622 (7,960)
  query : 1 - 2,211 (2,211/2,267)
  8 exons
  identity = 0.999
  5'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
      0.999)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    nucl 14.5, extr 14, mito_nucl 9.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000098257 ( BC046104 )
  (Similar to Uncharacterized protein; Fragment;)
  genome : 2,802,674 - 2,808,523 (5,850)
  query : 1 - 773 (773/787)
  5 exons
  identity = 0.997
  5'(0.994;0.996;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 22, mito 6, cyto 3, E.R._mito 3, mito_pero 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000052524 ( BC041155 )
  (Similar to Uncharacterized protein; Fragment;)
  genome : 2,802,676 - 2,821,412 (18,737)
  query : 1 - 1,208 (1,208/1,261)
  11 exons
  identity = 0.997
  5'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;0.973)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 29.5, cyto_nucl 16
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000000030 ( AB002322 )
  (Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,678 - 2,821,411 (18,734)
  query : 1 - 9,003 (9,003/9,003)
  15 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;0.999;1.000;1.000;1.000;
      1.000)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000086907 ( BC007752 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,678 - 2,808,523 (5,846)
  query : 1 - 769 (769/786)
  5 exons
  identity = 0.999
  5'(0.994;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 24, cyto 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000058463 ( AB016089 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,689 - 2,809,405 (6,717)
  query : 1 - 927 (927/944)
  8 exons
  identity = 0.995
  5'(0.969;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000)3'
  coverage = 0.982
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 29
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000300681 ( CR621486 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,706 - 2,811,795 (9,090)
  query : 1 - 1,439 (1,439/1,439)
  11 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000058462 ( AB016088 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,802,717 - 2,813,502 (10,786)
  query : 1 - 2,870 (2,870/2,870)
  10 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;0.999)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000055735 ( BX647088 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,806,505 - 2,815,739 (9,235)
  query : 235 - 5,305 (5,071/5,322)
  10 exons
  identity = 0.999
  5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;0.998)3'
  coverage = 0.956
  InterPro :
    IPR013170 : mRNA splicing factor, Cwf21
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 16.5, cyto_nucl 11.5, mito 10, cyto 3.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000072068 ( AF161338 )
  (Non-protein coding transcript.)
  genome : 2,807,491 - 2,808,509 (1,019)
  query : 1 - 293 (293/293)
  3 exons
  identity = 0.986
  5'(1.000;0.988;0.949)3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000058444 ( AB015644 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,808,985 - 2,811,803 (2,819)
  query : 5 - 686 (682/686)
  6 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
  coverage = 0.994
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000058461 ( AB016087 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,809,022 - 2,814,946 (5,925)
  query : 1 - 3,788 (3,788/3,788)
  6 exons
  identity = 0.999
  5'(1.000;1.000;1.000;1.000;1.000;0.999)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000054297 ( BX537511 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,809,934 - 2,810,844 (911)
  query : 1 - 911 (911/951)
  1 exon
  identity = 0.998
  5'(0.998)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 18, cyto 9.5, cyto_nucl 8.5, nucl 4.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000058464 ( AB016090 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,813,151 - 2,815,558 (2,408)
  query : 1 - 2,408 (2,408/2,408)
  1 exon
  identity = 0.999
  5'(0.999)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 28, cyto_nucl 17.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000058465 ( AB016091 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,814,959 - 2,821,411 (6,453)
  query : 1 - 4,373 (4,373/4,373)
  5 exons
  identity = 1.000
  5'(0.999;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 28.5, cyto_nucl 17.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000437017 ( DQ570486 )
  (Non-protein coding transcript.)
  genome : 2,816,320 - 2,816,350 (31)
  query : 1 - 31 (31/31)
  1 exon
  identity = 0.968
  5'(0.968)3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0202358
HIT000324988 ( X97301 )
  Representative transcript
  (Non-protein coding transcript.)
  genome : 2,816,392 - 2,816,564 (173)
  query : 1 - 173 (173/173)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0202358)

HIX0012738
HIT000091467 ( BC028054 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,816,504 - 2,821,412 (4,909)
  query : 12 - 2,840 (2,829/2,855)
  5 exons
  identity = 1.000
  5'(0.999;1.000;1.000;1.000;1.000)3'
  coverage = 0.996
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 27.5, cyto_nucl 15
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0194349
HIT000338651 ( BC107087 )
  Representative transcript
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,816,752 - 2,817,440 (689)
  query : 9 - 697 (689/708)
  1 exon
  identity = 0.996
  3'(0.996)5'
  coverage = 0.973
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 13, mito 9, cyto_nucl 4, nucl 3, cyto 3, lyso 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0194349)

HIX0012738
HIT000008853 ( AK025579 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,816,856 - 2,821,408 (4,553)
  query : 1 - 2,473 (2,473/2,513)
  5 exons
  identity = 0.999
  5'(0.999;1.000;1.000;1.000;0.998)3'
  coverage = 0.999
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 29.5, cyto_nucl 16
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000009177 ( AK025903 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,817,722 - 2,821,412 (3,691)
  query : 1 - 1,611 (1,611/1,627)
  5 exons
  identity = 0.999
  5'(0.998;1.000;1.000;1.000;0.998)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 29.5, cyto_nucl 16.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000087202 ( BC009062 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,818,191 - 2,821,412 (3,222)
  query : 1 - 1,142 (1,142/1,165)
  5 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 26, cyto_nucl 17.5, cyto 5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000028584 ( AL833672 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,818,381 - 2,821,409 (3,029)
  query : 1 - 2,751 (2,751/2,777)
  3 exons
  identity = 0.999
  5'(0.999;1.000;1.000)3'
  coverage = 0.996
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, cyto_nucl 10.5, nucl 9.5, cyto 8.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000363578 ( ENST00000382300 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,818,482 - 2,821,411 (2,930)
  query : 1 - 1,245 (1,245/1,245)
  4 exons
  identity = 0.998
  5'(0.996;0.991;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 19, cyto_nucl 17, cyto 9
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000279609 ( CR600414 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,819,252 - 2,821,413 (2,162)
  query : 1 - 817 (817/817)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0012738
HIT000302525 ( CR623330 )
  (Similar to Serine/arginine repetitive matrix protein 2; 300 kDa nuclear matrix antigen; Serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa; SR-related nuclear matrix protein of 300 kDa; Ser/Arg-related nuclear matrix protein of 300 kDa; Splicing coactivator subunit SRm300; Tax-responsive enhancer element-binding protein 803; TaxREB803;)
  genome : 2,819,375 - 2,821,380 (2,006)
  query : 1 - 1,728 (1,728/1,728)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 15, nucl 9.5, extr 7, cyto_nucl 5.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012738)

HIX0038597
HIT000203637 ( NM_007108 )
  (Transcription elongation factor B polypeptide 2 isoform a.)
  genome : 2,821,415 - 2,827,297 (5,883)
  query : 1 - 990 (990/998)
  4 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000)5'
  coverage = 0.992
  InterPro :
    IPR000626 : Ubiquitin
    IPR019955 : Ubiquitin supergroup
  GO :
    0005515 : Molecular Function : protein binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 20, cyto_nucl 15.5, nucl 5, extr 3, mito 3
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0038597)

HIX0038597
HIT000320250 ( NM_207013 )
  (Transcription elongation factor B polypeptide 2 isoform b.)
  genome : 2,821,415 - 2,827,297 (5,883)
  query : 1 - 601 (601/609)
  5 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000)5'
  coverage = 0.987
  InterPro :
    IPR000626 : Ubiquitin
    IPR019955 : Ubiquitin supergroup
  GO :
    0005515 : Molecular Function : protein binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 14.5, cyto_nucl 14, cyto 10.5, extr 7
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0038597)

HIX0038597
HIT000108348 ( ENST00000262306 )
  (Transcription elongation factor B polypeptide 2 isoform b.)
  genome : 2,821,416 - 2,827,297 (5,882)
  query : 1 - 600 (600/600)
  5 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 29
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0038597)

HIX0038597
HIT000507930 ( ENST00000409906 )
  (Transcription elongation factor B polypeptide 2 isoform a.)
  genome : 2,821,416 - 2,827,297 (5,882)
  query : 1 - 989 (989/989)
  4 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 29
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0038597)

HIX0038597
eHIT000006605 ( ESTsASS_16_828 )
  (Transcription elongation factor B polypeptide 2 isoform b.)
  genome : 2,821,416 - 2,827,278 (5,863)
  query : 1 - 581 (581/581)
  5 exons
  InterPro :
    IPR000626 : Ubiquitin
    IPR019955 : Ubiquitin supergroup
  GO :
    0005515 : Molecular Function : protein binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 14.5, cyto_nucl 14, cyto 10.5, extr 7
  ESTs assembly
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0038597)
  ESTs used for assembly :
    BG329435,AI161393

HIX0038597
HIT000507509 ( ENST00000409477 )
  (Similar to Transcription elongation factor B polypeptide 2; Elongin 18 kDa subunit; Elongin-B; EloB; RNA polymerase II transcription factor SIII subunit B; SIII p18;)
  genome : 2,821,416 - 2,827,196 (5,781)
  query : 1 - 997 (997/997)
  3 exons
  identity = 1.000
  3'(1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR000626 : Ubiquitin
    IPR019955 : Ubiquitin supergroup
  GO :
    0005515 : Molecular Function : protein binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 16, cyto 9.5, cyto_nucl 8, E.R._mito 8
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0038597)

HIX0038597
HIT000261705 ( BC065000 )
  (Transcription elongation factor B polypeptide 2 isoform a.)
  genome : 2,821,944 - 2,827,139 (5,196)
  query : 5 - 416 (412/439)
  3 exons
  identity = 0.988
  3'(0.994;1.000;0.973)5'
  coverage = 0.988
  InterPro :
    IPR000626 : Ubiquitin
    IPR019955 : Ubiquitin supergroup
  GO :
    0005515 : Molecular Function : protein binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 20, cyto_nucl 15.5, nucl 5, extr 3, mito 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0038597)

HIX0038597
HIT000193865 ( L42856 )
  (Transcription elongation factor B polypeptide 2 isoform a.)
  genome : 2,821,991 - 2,827,129 (5,139)
  query : 3 - 357 (355/357)
  3 exons
  identity = 1.000
  3'(1.000;1.000;1.000)5'
  coverage = 0.994
  InterPro :
    IPR000626 : Ubiquitin
    IPR019955 : Ubiquitin supergroup
  GO :
    0005515 : Molecular Function : protein binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 20, cyto_nucl 15.5, nucl 5, extr 3, mito 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0038597)

HIX0038597
HIT000598328 ( ENST00000494946 )
  (Similar to Transcription elongation factor B polypeptide 2; Elongin 18 kDa subunit; Elongin-B; EloB; RNA polymerase II transcription factor SIII subunit B; SIII p18;)
  genome : 2,825,560 - 2,827,128 (1,569)
  query : 1 - 202 (202/202)
  2 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 14, cyto_nucl 8.5, cyto 8, mito_pero 8
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0038597)

HIX0012740
HIT000013065 ( AK056451 )
  Representative transcript
  (Hypothetical protein.)
  genome : 2,827,370 - 2,830,575 (3,206)
  query : 1 - 3,206 (3,206/3,206)
  1 exon
  identity = 0.997
  5'(0.997)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, cyto_nucl 12.1667, nucl 9, cyto 9,
    cyto_pero 6.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0012740)

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )