bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0222581
HIT000673448 (
ENST00000560201
)
(Hypothetical short protein.)
genome : 88,520,598 - 88,522,034 (1,437)
query : 1 - 424 (424/424)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 11, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222581)
HIX0221987
HIT000671589 (
ENST00000558306
)
(Conserved hypothetical protein.)
genome : 88,522,285 - 88,670,422 (148,138)
query : 1 - 629 (629/629)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 8.5, cyto 7, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221987)
HIX0221987
HIT000064801
(
AF058390
)
Representative transcript
(NT-3 growth factor receptor isoform c precursor.)
genome : 88,522,582 - 88,576,115 (53,534)
query : 1 - 141 (141/141)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 12, cyto_nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221987)
HIX0221987
HIT000636345 (
ENST00000537300
)
(Conserved hypothetical protein.)
genome : 88,522,582 - 88,576,115 (53,534)
query : 1 - 141 (141/141)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 12, cyto_nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221987)
HIX0221987
HIT000436163
(
DQ323596
)
(Non-protein coding transcript.)
genome : 88,524,455 - 88,576,124 (51,670)
query : 1 - 174 (174/185)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.941
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221987)
HIX0222637
HIT000673977 (
ENST00000560739
)
(Hypothetical short protein.)
genome : 88,615,655 - 88,642,496 (26,842)
query : 1 - 572 (572/572)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222637)
HIX0222386
HIT000671187 (
ENST00000557897
)
(Conserved hypothetical protein.)
genome : 88,615,832 - 88,669,592 (53,761)
query : 1 - 398 (398/398)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222386)
HIX0222019
HIT000673019 (
ENST00000559764
)
(Immunoglobulin I-set domain containing protein.)
genome : 88,675,200 - 88,679,274 (4,075)
query : 10 - 538 (529/538)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.983
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11.5, extr 8, nucl 5, mito 4,
extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222019)
HIX0222019
HIT000389775
(
BC128249
)
Representative transcript
(Tyrosine-protein kinase, neurotrophic receptor family protein.)
genome : 88,678,435 - 88,680,710 (2,276)
query : 10 - 563 (554/577)
4 exons
identity = 0.989
3'(1.000;1.000;0.993;0.934)5'
coverage = 0.960
InterPro :
IPR013098 : Immunoglobulin I-set
IPR020777 : Tyrosine-protein kinase, neurotrophic receptor
GO :
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005524 : Molecular Function : ATP binding
0005887 : Cellular Component : integral component of plasma membrane
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 7.5, extr_plas 7.5, cysk 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222019)
HIX0222019
HIT000672458 (
ENST00000559188
)
(Leucine-rich repeat containing protein.)
genome : 88,680,692 - 88,795,853 (115,162)
query : 1 - 535 (535/535)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, cyto 14.5, nucl 12.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222019)
HIX0222470
HIT000672050 (
ENST00000558776
)
(Conserved hypothetical protein.)
genome : 88,687,166 - 88,687,396 (231)
query : 1 - 231 (231/231)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, extr 10, cyto_nucl 9.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222470)
HIX0012550
HIT000022340
(
AK097486
)
Representative transcript
(Conserved hypothetical protein.)
genome : 88,795,961 - 88,814,297 (18,337)
query : 1 - 2,662 (2,662/2,662)
4 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3.5, cyto_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012550)
HIX0012550
HIT000660170 (
NR_038229
)
(Hypothetical protein.)
genome : 88,795,961 - 88,814,297 (18,337)
query : 1 - 2,663 (2,663/2,663)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 5, cyto_nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012550)
HIX0012550
HIT000682526 (
ENST00000569588
)
(Hypothetical protein.)
genome : 88,795,961 - 88,814,297 (18,337)
query : 1 - 2,663 (2,663/2,663)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012550)
HIX0222490
HIT000672338 (
ENST00000559067
)
(Tyrosine-protein kinase, neurotrophic receptor, type 3 family protein.)
genome : 88,799,137 - 88,799,999 (863)
query : 1 - 554 (554/554)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, mito 6.5, mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222490)
HIX0012555
HIT000038179
(
BC017883
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,710 - 89,010,619 (7,910)
query : 1 - 985 (985/1,016)
4 exons
identity = 0.998
3'(0.997;0.994;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR015797 : NUDIX hydrolase domain-like
IPR021757 : Ribosomal protein L46
GO :
0016787 : Molecular Function : hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000073859
(
AF205435
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,709 - 89,010,610 (7,902)
query : 2 - 978 (977/1,000)
4 exons
identity = 0.999
3'(1.000;0.994;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR015797 : NUDIX hydrolase domain-like
IPR021757 : Ribosomal protein L46
GO :
0016787 : Molecular Function : hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000208655 (
NM_022163
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,709 - 89,010,633 (7,925)
query : 1 - 1,000 (1,000/1,020)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000074009
(
AF210056
)
Representative transcript
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,709 - 89,010,619 (7,911)
query : 1 - 986 (986/1,006)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR015797 : NUDIX hydrolase domain-like
IPR021757 : Ribosomal protein L46
GO :
0016787 : Molecular Function : hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK014205
Danio
sp. (Zebrafish) : BC076280
Rattus
sp. (Rat) : BC086407
Bos
sp. (Cow) : BC103228
Gallus
sp. (Chicken) : BX950417
Tetraodon
sp. (Tetraodon) : CR693700
Pongo
sp. (Orangutan) : CR858541
Canis
sp. (Dog) : ENSCAFT00000018235
Monodelphis
sp. (Opossum) : ENSMODT00000024875
Oryzias
sp. (Medaka) : ENSORLT00000018285
Takifugu
sp. (Fugu) : SINFRUT00000134085
Macaca
sp. (Macaque) : XM_001088970
Pan
sp. (Chimpanzee) : XM_001164394
Equus
sp. (Horse) : XM_001916648
HIX0012555
HIT000119397 (
ENST00000312475
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,707 - 89,010,650 (7,944)
query : 1 - 1,019 (1,019/1,019)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000014833
(
AK074053
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,708 - 89,008,978 (6,271)
query : 1 - 5,563 (5,563/5,563)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
InterPro :
IPR015797 : NUDIX hydrolase domain-like
GO :
0016787 : Molecular Function : hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 12.5, mito 9, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000671935 (
ENST00000558660
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,708 - 89,008,978 (6,271)
query : 1 - 5,561 (5,561/5,561)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 12.5, mito 9, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000672801 (
ENST00000559538
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,709 - 89,008,044 (5,336)
query : 1 - 727 (727/727)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25.5, cyto_nucl 14, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000673941 (
ENST00000560703
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,839 - 89,010,620 (7,782)
query : 1 - 670 (670/670)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, extr 2, cyto_nucl 2, nucl 1.5, cyto 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000434300
(
AK315434
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,844 - 89,010,618 (7,775)
query : 1 - 850 (850/850)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR015797 : NUDIX hydrolase domain-like
IPR021757 : Ribosomal protein L46
GO :
0016787 : Molecular Function : hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000674370 (
ENST00000561140
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,948 - 89,054,752 (51,805)
query : 1 - 598 (598/598)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13.5, extr 8, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000675047 (
ENST00000561832
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,002,948 - 89,054,752 (51,805)
query : 1 - 598 (598/598)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13.5, extr 8, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012555
HIT000671809 (
ENST00000558531
)
(39S ribosomal protein L46, mitochondrial; L46mt; MRP-L46; P2ECSL; Precursor;)
genome : 89,008,244 - 89,010,621 (2,378)
query : 1 - 1,002 (1,002/1,002)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25.5, mito_pero 14, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012555)
HIX0012551
HIT000124356 (
ENST00000325844
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,684 - 89,022,222 (11,539)
query : 1 - 1,862 (1,862/1,862)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 6, cyto 5.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000208905 (
NM_022839
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,684 - 89,021,861 (11,178)
query : 1 - 1,501 (1,501/1,501)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 6, cyto 5.5, nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000215404 (
NM_176805
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,684 - 89,021,861 (11,178)
query : 1 - 1,402 (1,402/1,402)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 7.5, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000059541
(
AB049944
)
Representative transcript
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,684 - 89,021,495 (10,812)
query : 1 - 1,135 (1,135/1,136)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR001971 : Ribosomal protein S11
IPR018102 : Ribosomal S11, conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 6, cyto 5.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB174446
Gallus
sp. (Chicken) : AJ719914
Mus
sp. (Mouse) : AK002993
Bos
sp. (Cow) : BC102297
Danio
sp. (Zebrafish) : BC134987
Tetraodon
sp. (Tetraodon) : CR677821
Canis
sp. (Dog) : ENSCAFT00000018243
Equus
sp. (Horse) : ENSECAT00000007323
Oryzias
sp. (Medaka) : ENSORLT00000018269
Pongo
sp. (Orangutan) : ENSPPYT00000007971
Pan
sp. (Chimpanzee) : ENSPTRT00000013679
Takifugu
sp. (Fugu) : SINFRUT00000168248
Rattus
sp. (Rat) : XM_001059288
Monodelphis
sp. (Opossum) : XM_001370691
HIX0012551
HIT000673946 (
ENST00000560708
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,684 - 89,021,482 (10,799)
query : 1 - 1,060 (1,060/1,060)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 6, extr 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000672395 (
ENST00000559125
)
(Conserved hypothetical protein.)
genome : 89,010,909 - 89,011,489 (581)
query : 1 - 453 (453/453)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 14, extr 6, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000041519
(
BC032378
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,926 - 89,021,495 (10,570)
query : 12 - 904 (893/923)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.988
InterPro :
IPR001971 : Ribosomal protein S11
IPR018102 : Ribosomal S11, conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 6, cyto 5.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000035840
(
BC012489
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,927 - 89,021,493 (10,567)
query : 1 - 887 (887/902)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR001971 : Ribosomal protein S11
IPR018102 : Ribosomal S11, conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, cyto_nucl 4, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000671264 (
ENST00000557974
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,936 - 89,021,135 (10,200)
query : 1 - 504 (504/504)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000010333
(
AK027059
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,937 - 89,021,495 (10,559)
query : 1 - 2,001 (2,001/2,022)
6 exons
identity = 0.999
5'(0.987;0.998;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, cyto 4, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000672589 (
ENST00000559323
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,937 - 89,021,494 (10,558)
query : 1 - 2,002 (2,002/2,002)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, cyto 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000330932
(
AK223152
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,940 - 89,022,216 (11,277)
query : 2 - 1,601 (1,600/1,650)
6 exons
identity = 0.997
5'(1.000;0.991;1.000;1.000;1.000;0.996)3'
coverage = 0.999
InterPro :
IPR001971 : Ribosomal protein S11
IPR018102 : Ribosomal S11, conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 6, cyto 5.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000009439
(
AK026165
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,939 - 89,021,495 (10,557)
query : 1 - 880 (880/894)
6 exons
identity = 0.999
5'(1.000;0.991;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001971 : Ribosomal protein S11
IPR018102 : Ribosomal S11, conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 6, cyto 5.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000330713
(
AK222933
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,939 - 89,021,495 (10,557)
query : 1 - 880 (880/894)
6 exons
identity = 0.999
5'(1.000;0.991;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001971 : Ribosomal protein S11
IPR018102 : Ribosomal S11, conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 6, cyto 5.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000434273
(
AK315407
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,939 - 89,021,210 (10,272)
query : 1 - 595 (595/595)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001971 : Ribosomal protein S11
IPR018102 : Ribosomal S11, conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 6, cyto 5.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000674087 (
ENST00000560850
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,939 - 89,015,851 (4,913)
query : 1 - 458 (458/458)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 4, nucl 2, cyto_pero 2, cyto_plas 2,
cyto_golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000085803
(
BC000200
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,942 - 89,012,245 (1,304)
query : 1 - 1,304 (1,304/1,320)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000308418 (
ENST00000353598
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,949 - 89,021,490 (10,542)
query : 1 - 766 (766/766)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 7.5, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000087282
(
BC009451
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,010,952 - 89,021,490 (10,539)
query : 1 - 763 (763/785)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR001971 : Ribosomal protein S11
IPR018102 : Ribosomal S11, conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto_nucl 6.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000671685 (
ENST00000558406
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Precursor;)
genome : 89,010,967 - 89,021,436 (10,470)
query : 1 - 918 (918/918)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000672820 (
ENST00000559557
)
(Hypothetical short protein.)
genome : 89,011,194 - 89,015,851 (4,658)
query : 1 - 447 (447/447)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 16, nucl 9, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000671826 (
ENST00000558548
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,015,738 - 89,021,498 (5,761)
query : 1 - 745 (745/745)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 14.5, extr 7, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000674488 (
ENST00000561262
)
(28S ribosomal protein S11, mitochondrial; MRP-S11; S11mt; Cervical cancer proto-oncogene 2 protein; HCC-2; Precursor;)
genome : 89,019,956 - 89,021,498 (1,543)
query : 1 - 726 (726/726)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 11, mito 10, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012551
HIT000250239
(
AL110094
)
(Conserved hypothetical protein.)
genome : 89,021,102 - 89,021,618 (517)
query : 9 - 525 (517/547)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 0.985
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 7, cyto_nucl 6, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012551)
HIX0012554
HIT000017815
(
AK092948
)
Representative transcript
(Signal-transducing adaptor protein 2 isoform 1.)
genome : 89,037,697 - 89,040,660 (2,964)
query : 1 - 2,964 (2,964/2,964)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 9, cyto_nucl 3.16667, cyto_pero 2.83333,
nucl 2.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012554)
HIX0038256
HIT000045666
(
AK125793
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,045,149 - 89,049,018 (3,870)
query : 1 - 3,801 (3,801/3,801)
2 exons
identity = 0.999
5'(0.999;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038256)
HIX0022291
HIT000015633
(
AK090766
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,045,155 - 89,052,959 (7,805)
query : 3 - 2,533 (2,531/2,533)
2 exons
identity = 0.992
3'(0.992;0.990)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 8, cyto_mito 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022291)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : ENSPTRT00000046968
HIX0012553
HIT000265091
(
BC073867
)
(De-etiolated protein 1, Det1 family protein.)
genome : 89,054,787 - 89,089,876 (35,090)
query : 1 - 2,261 (2,261/2,275)
7 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.981;1.000)5'
coverage = 1.000
InterPro :
IPR019138 : De-etiolated protein 1, Det1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 12.5, nucl 11.5, extr 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000671134 (
ENST00000557842
)
(De-etiolated protein 1, Det1 family protein.)
genome : 89,054,790 - 89,089,876 (35,087)
query : 1 - 2,258 (2,258/2,258)
7 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.981;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 12.5, nucl 11.5, extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000261510
(
BC064591
)
(De-etiolated protein 1, Det1 family protein.)
genome : 89,055,713 - 89,089,891 (34,179)
query : 1 - 1,926 (1,926/1,954)
5 exons
identity = 0.999
3'(1.000;1.000;1.000;0.981;1.000)5'
coverage = 1.000
InterPro :
IPR019138 : De-etiolated protein 1, Det1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 14.5, nucl 8, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000030250
(
BC001242
)
(DET1 homolog isoform 2.)
genome : 89,055,713 - 89,074,371 (18,659)
query : 1 - 1,557 (1,557/1,573)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019138 : De-etiolated protein 1, Det1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 14.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000328474
(
AB073887
)
(DET1 homolog; De-etiolated-1 homolog;)
genome : 89,055,711 - 89,089,906 (34,196)
query : 1 - 2,270 (2,270/2,273)
5 exons
identity = 0.999
3'(0.995;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR019138 : De-etiolated protein 1, Det1
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000206842 (
NM_017996
)
(DET1 homolog; De-etiolated-1 homolog;)
genome : 89,055,714 - 89,089,912 (34,199)
query : 1 - 2,343 (2,343/2,343)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15.5, cyto 12
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000560983 (
NM_001144074
)
(DET1 homolog; De-etiolated-1 homolog;)
genome : 89,055,714 - 89,089,912 (34,199)
query : 1 - 2,273 (2,273/2,273)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.5, cyto 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000562847 (
NR_026645
)
(De-etiolated protein 1, Det1 family protein.)
genome : 89,055,714 - 89,089,912 (34,199)
query : 1 - 1,946 (1,946/1,946)
5 exons
identity = 0.999
3'(1.000;1.000;1.000;0.981;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 14.5, nucl 8, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000110266 (
ENST00000268148
)
(DET1 homolog; De-etiolated-1 homolog;)
genome : 89,055,714 - 89,089,906 (34,193)
query : 1 - 2,267 (2,267/2,267)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000671129 (
ENST00000557837
)
(De-etiolated protein 1, Det1 family protein.)
genome : 89,055,714 - 89,089,891 (34,178)
query : 1 - 1,925 (1,925/1,925)
5 exons
identity = 0.999
3'(1.000;1.000;1.000;0.981;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 14.5, nucl 8, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000011217
(
AK054603
)
Representative transcript
(DET1 homolog; De-etiolated-1 homolog;)
genome : 89,055,714 - 89,089,884 (34,171)
query : 1 - 2,315 (2,315/2,315)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019138 : De-etiolated protein 1, Det1
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15.5, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC031930
Danio
sp. (Zebrafish) : BC055677
Rattus
sp. (Rat) : BC100253
Bos
sp. (Cow) : BC142507
Gallus
sp. (Chicken) : CR353108
Oryzias
sp. (Medaka) : ENSORLT00000015879
Pongo
sp. (Orangutan) : ENSPPYT00000007973
Tetraodon
sp. (Tetraodon) : GSTENT00006167001
Takifugu
sp. (Fugu) : SINFRUT00000145831
Macaca
sp. (Macaque) : XM_001089083
Pan
sp. (Chimpanzee) : XM_001164700
Monodelphis
sp. (Opossum) : XM_001364378
Canis
sp. (Dog) : XM_536186
HIX0012553
HIT000677529 (
ENST00000564406
)
(DET1 homolog; De-etiolated-1 homolog;)
genome : 89,055,714 - 89,089,884 (34,171)
query : 1 - 2,315 (2,315/2,315)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15.5, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000542234 (
ENST00000444300
)
(DET1 homolog; De-etiolated-1 homolog;)
genome : 89,055,714 - 89,079,565 (23,852)
query : 1 - 2,154 (2,154/2,154)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15.5, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000003439
(
AK000965
)
(DET1 homolog isoform 2.)
genome : 89,055,714 - 89,074,410 (18,697)
query : 1 - 1,595 (1,595/1,595)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 13, nucl 11, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000339229
(
BC109060
)
(DET1 homolog; De-etiolated-1 homolog;)
genome : 89,056,098 - 89,089,793 (33,696)
query : 1 - 1,770 (1,770/1,771)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR019138 : De-etiolated protein 1, Det1
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000339230
(
BC109061
)
(DET1 homolog; De-etiolated-1 homolog;)
genome : 89,056,098 - 89,089,793 (33,696)
query : 1 - 1,770 (1,770/1,771)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR019138 : De-etiolated protein 1, Det1
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0012553
HIT000671692 (
ENST00000558413
)
(DET1 homolog isoform 2.)
genome : 89,074,004 - 89,089,865 (15,862)
query : 1 - 583 (583/583)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 14, cyto 6.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012553)
HIX0222533
HIT000672914 (
ENST00000559656
)
(Non-protein coding transcript.)
genome : 89,075,099 - 89,089,568 (14,470)
query : 1 - 161 (161/161)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222533)
HIX0026877
HIT000048760
(
AK129489
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,110,825 - 89,111,873 (1,049)
query : 1 - 1,049 (1,049/1,049)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, plas 5, cyto 4, E.R. 2, cyto_pero 2,
cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026877)
HIX0026877
HIT000672006 (
ENST00000558732
)
(Conserved hypothetical protein.)
genome : 89,111,518 - 89,111,793 (276)
query : 1 - 276 (276/276)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, extr 7, cyto_nucl 7, mito 4.5, extr_plas 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026877)
HIX0022147
HIT000011363
(
AK054749
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,128,802 - 89,147,834 (19,033)
query : 1 - 1,835 (1,835/1,835)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 7, cyto_nucl 7, cyto 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022147)
HIX0022147
HIT000606174 (
ENST00000506090
)
(Conserved hypothetical protein.)
genome : 89,128,802 - 89,147,834 (19,033)
query : 1 - 1,835 (1,835/1,835)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 6.5, cyto_nucl 6, cyto 4.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022147)
HIX0022147
HIT000673613 (
ENST00000560368
)
(Non-protein coding transcript.)
genome : 89,130,005 - 89,148,341 (18,337)
query : 1 - 622 (622/622)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022147)
HIX0022147
HIT000672109 (
ENST00000558835
)
(Non-protein coding transcript.)
genome : 89,146,614 - 89,147,290 (677)
query : 1 - 189 (189/189)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022147)
HIX0173105
HIT000506777 (
ENST00000408703
)
(Non-protein coding transcript.)
genome : 89,151,338 - 89,151,428 (91)
query : 1 - 91 (91/91)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173105)
HIX0173105
HIT000658507 (
NR_031590
)
(Non-protein coding transcript.)
genome : 89,151,338 - 89,151,428 (91)
query : 1 - 91 (91/91)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173105)
HIX0156782
HIT000470894 (
ENST00000384970
)
(Non-protein coding transcript.)
genome : 89,155,056 - 89,155,165 (110)
query : 1 - 110 (110/110)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0156782)
HIX0156782
HIT000658005 (
NR_029606
)
(Non-protein coding transcript.)
genome : 89,155,056 - 89,155,165 (110)
query : 1 - 110 (110/110)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0156782)
HIX0222854
HIT000725930 (
NR_039867
)
(Non-protein coding transcript.)
genome : 89,155,078 - 89,155,155 (78)
query : 1 - 78 (78/78)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222854)
HIX0012556
HIT000048496
(
AK128623
)
(Conserved hypothetical protein.)
genome : 89,164,152 - 89,168,114 (3,963)
query : 1 - 3,962 (3,962/3,962)
1 exon
identity = 0.994
5'(0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, mito 9, cyto 7, cyto_nucl 6.5,
cyto_pero 5.83333, nucl 4.5, E.R._mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000208850 (
NM_022767
)
(Apoptosis-enhancing nuclease; EC=3.1.-.-; Interferon-stimulated 20 kDa exonuclease-like 1;)
genome : 89,164,527 - 89,175,512 (10,986)
query : 1 - 3,116 (3,116/3,134)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.1.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.5, cyto 9.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000128000 (
ENST00000332810
)
(Apoptosis-enhancing nuclease; EC=3.1.-.-; Interferon-stimulated 20 kDa exonuclease-like 1;)
genome : 89,164,527 - 89,175,513 (10,987)
query : 1 - 3,117 (3,117/3,117)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000426985
(
AK308119
)
(Apoptosis-enhancing nuclease.)
genome : 89,164,568 - 89,170,572 (6,005)
query : 3 - 1,243 (1,241/1,243)
2 exons
identity = 0.996
5'(1.000;0.996)3'
coverage = 0.998
InterPro :
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 13, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000671079 (
ENST00000557787
)
(Apoptosis-enhancing nuclease.)
genome : 89,164,568 - 89,170,572 (6,005)
query : 1 - 1,242 (1,242/1,242)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 13, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000672791 (
ENST00000559528
)
(Apoptosis-enhancing nuclease.)
genome : 89,164,601 - 89,169,977 (5,377)
query : 1 - 895 (895/895)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 12.5, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000671610 (
ENST00000558327
)
(Apoptosis-enhancing nuclease.)
genome : 89,164,612 - 89,169,842 (5,231)
query : 1 - 883 (883/883)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 12, extr 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000673422 (
ENST00000560174
)
(Non-protein coding transcript.)
genome : 89,164,612 - 89,169,410 (4,799)
query : 1 - 461 (461/461)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0211970
HIT000652871
(
HQ013236
)
Representative transcript
(Non-protein coding transcript.)
genome : 89,167,323 - 89,167,573 (251)
query : 1 - 250 (250/254)
1 exon
identity = 0.960
3'(0.960)5'
coverage = 0.984
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211970)
HIX0012556
HIT000039071
(
BC020988
)
(Apoptosis-enhancing nuclease; EC=3.1.-.-; Interferon-stimulated 20 kDa exonuclease-like 1;)
genome : 89,169,371 - 89,175,512 (6,142)
query : 20 - 3,055 (3,036/3,074)
3 exons
identity = 0.996
5'(0.998;0.995;0.996)3'
coverage = 0.993
EC number :
EC 3.1.-.-
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.5, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000077257
(
AF318330
)
(Apoptosis-enhancing nuclease.)
genome : 89,169,371 - 89,175,512 (6,142)
query : 14 - 3,048 (3,035/3,094)
3 exons
identity = 0.995
5'(0.990;0.995;0.996)3'
coverage = 0.981
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.5, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000360511 (
ENST00000379231
)
(Apoptosis-enhancing nuclease.)
genome : 89,169,371 - 89,174,407 (5,037)
query : 14 - 1,067 (1,054/1,067)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.987)3'
coverage = 0.988
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 16, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000077536
(
AF327352
)
(Apoptosis-enhancing nuclease; EC=3.1.-.-; Interferon-stimulated 20 kDa exonuclease-like 1;)
genome : 89,169,381 - 89,175,512 (6,132)
query : 13 - 3,038 (3,026/3,056)
3 exons
identity = 0.996
5'(0.997;0.990;0.996)3'
coverage = 0.996
EC number :
EC 3.1.-.-
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16.5, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000032259
(
BC005164
)
Representative transcript
(Apoptosis-enhancing nuclease.)
genome : 89,169,381 - 89,175,512 (6,132)
query : 8 - 2,156 (2,149/2,174)
4 exons
identity = 0.996
5'(0.997;0.995;1.000;0.996)3'
coverage = 0.996
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 16, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000036677
(
BC014407
)
(Apoptosis-enhancing nuclease.)
genome : 89,169,755 - 89,175,512 (5,758)
query : 1 - 2,651 (2,651/2,668)
3 exons
identity = 0.997
5'(0.996;0.995;0.997)3'
coverage = 1.000
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK031972
Danio
sp. (Zebrafish) : BC152518
Canis
sp. (Dog) : ENSCAFT00000018286
Oryzias
sp. (Medaka) : ENSORLT00000001827
Pongo
sp. (Orangutan) : ENSPPYT00000007975
Tetraodon
sp. (Tetraodon) : GSTENT00019678001
Takifugu
sp. (Fugu) : SINFRUT00000137348
Rattus
sp. (Rat) : XM_001064302
Monodelphis
sp. (Opossum) : XM_001370591
Equus
sp. (Horse) : XM_001917532
Gallus
sp. (Chicken) : XM_413869
Pan
sp. (Chimpanzee) : XM_510574
Macaca
sp. (Macaque) : XR_010786
Bos
sp. (Cow) : XR_027384
HIX0012556
HIT000005820
(
AK022546
)
(Apoptosis-enhancing nuclease.)
genome : 89,169,756 - 89,175,512 (5,757)
query : 1 - 2,650 (2,650/2,650)
3 exons
identity = 0.997
5'(0.996;0.995;0.997)3'
coverage = 1.000
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000329258
(
AB209323
)
(Interferon-stimulated 20 kDa exonuclease-like 2; EC=3.1.-.-;)
genome : 89,169,843 - 89,175,512 (5,670)
query : 1 - 5,040 (5,040/5,040)
2 exons
identity = 0.997
5'(0.998;0.997)3'
coverage = 1.000
EC number :
EC 3.1.-.-
InterPro :
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto_nucl 9.33333, cyto 7.5, nucl 7,
cyto_pero 4.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000671217 (
ENST00000557927
)
(Interferon-stimulated 20 kDa exonuclease-like 2; EC=3.1.-.-;)
genome : 89,169,843 - 89,175,512 (5,670)
query : 1 - 5,039 (5,039/5,039)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.3333, nucl 10, mito 10, cyto 8.5,
cyto_pero 5.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0012556
HIT000005898
(
AK022624
)
(Apoptosis-enhancing nuclease.)
genome : 89,173,303 - 89,175,512 (2,210)
query : 1 - 2,210 (2,210/2,210)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
InterPro :
IPR012337 : Ribonuclease H-like domain
GO :
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 12, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012556)
HIX0132908
HIT000442820
(
DQ576289
)
Representative transcript
(Non-protein coding transcript.)
genome : 89,175,613 - 89,175,642 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0132908)
HIX0012557
HIT000042666
(
AK122793
)
(Interferon-stimulated gene 20 kDa protein; EC=3.1.13.1; Estrogen-regulated transcript 45 protein; Promyelocytic leukemia nuclear body-associated protein ISG20;)
genome : 89,178,904 - 89,198,880 (19,977)
query : 1 - 2,339 (2,339/2,339)
3 exons
identity = 0.996
5'(1.000;0.996;1.000)3'
coverage = 1.000
EC number :
EC 3.1.13.1
InterPro :
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 3.5, cyto_nucl 3, nucl 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000673979 (
ENST00000560741
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,179,384 - 89,198,852 (19,469)
query : 1 - 800 (800/800)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, cyto 7.5, extr 7, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000672264 (
ENST00000558992
)
(Non-protein coding transcript.)
genome : 89,179,401 - 89,180,659 (1,259)
query : 1 - 190 (190/190)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000117231 (
ENST00000306072
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,181,974 - 89,199,714 (17,741)
query : 1 - 1,856 (1,856/1,856)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, cyto 7.5, extr 7, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000033534
(
BC007922
)
Representative transcript
(Interferon-stimulated gene 20 kDa protein; EC=3.1.13.1; Estrogen-regulated transcript 45 protein; Promyelocytic leukemia nuclear body-associated protein ISG20;)
genome : 89,182,039 - 89,198,879 (16,841)
query : 1 - 956 (956/974)
4 exons
identity = 0.998
5'(1.000;0.996;0.995;1.000)3'
coverage = 0.999
EC number :
EC 3.1.13.1
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, cyto 7.5, extr 7, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000199118 (
NM_002201
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,182,039 - 89,198,879 (16,841)
query : 1 - 956 (956/974)
4 exons
identity = 0.998
5'(1.000;0.996;0.995;1.000)3'
coverage = 0.999
EC number :
EC 3.1.13.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, cyto 7.5, extr 7, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000426635
(
AK307769
)
(Interferon-stimulated gene 20 kDa protein; EC=3.1.13.1; Estrogen-regulated transcript 45 protein; Promyelocytic leukemia nuclear body-associated protein ISG20;)
genome : 89,182,172 - 89,199,575 (17,404)
query : 2 - 1,515 (1,514/1,515)
4 exons
identity = 0.994
5'(1.000;0.976;0.995;0.998)3'
coverage = 0.999
EC number :
EC 3.1.13.1
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, cyto 7.5, extr 7, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000360504 (
ENST00000379224
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,182,172 - 89,193,617 (11,446)
query : 1 - 540 (540/540)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 7.5, cyto_nucl 6, cyto 3.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000673131 (
ENST00000559876
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,182,184 - 89,198,742 (16,559)
query : 1 - 614 (614/614)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto_nucl 10.5, nucl 10, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000672215 (
ENST00000558942
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,182,194 - 89,198,847 (16,654)
query : 1 - 2,644 (2,644/2,644)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13, cyto 12, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000037543
(
BC016341
)
(Interferon-stimulated gene 20 kDa protein; EC=3.1.13.1; Estrogen-regulated transcript 45 protein; Promyelocytic leukemia nuclear body-associated protein ISG20;)
genome : 89,182,274 - 89,198,879 (16,606)
query : 2 - 2,699 (2,698/2,728)
4 exons
identity = 0.997
5'(0.993;1.000;0.996;1.000)3'
coverage = 0.999
EC number :
EC 3.1.13.1
InterPro :
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 7.5, cyto_nucl 6, cyto 3.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000673814 (
ENST00000560573
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,182,274 - 89,198,879 (16,606)
query : 1 - 2,698 (2,698/2,698)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13, cyto 12, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000222112
(
U88964
)
(Interferon-stimulated gene 20 kDa protein; EC=3.1.13.1; Estrogen-regulated transcript 45 protein; Promyelocytic leukemia nuclear body-associated protein ISG20;)
genome : 89,182,571 - 89,198,881 (16,311)
query : 11 - 702 (692/717)
3 exons
identity = 0.999
5'(0.996;1.000;1.000)3'
coverage = 0.986
EC number :
EC 3.1.13.1
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, cyto 7.5, extr 7, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000324390
(
X89773
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,182,583 - 89,198,880 (16,298)
query : 1 - 679 (679/679)
3 exons
identity = 0.999
5'(1.000;0.995;1.000)3'
coverage = 1.000
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, cyto 7.5, extr 7, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000099872
(
BT006952
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,182,598 - 89,198,760 (16,163)
query : 1 - 544 (544/546)
3 exons
identity = 0.998
5'(1.000;0.995;1.000)3'
coverage = 0.996
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, cyto 7.5, extr 7, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000267792
(
CR456942
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,182,598 - 89,198,758 (16,161)
query : 1 - 542 (542/546)
3 exons
identity = 0.998
5'(1.000;0.995;1.000)3'
coverage = 0.993
InterPro :
IPR006055 : Exonuclease
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
0004527 : Molecular Function : exonuclease activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, cyto 7.5, extr 7, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000329574
(
AB209639
)
(Interferon-stimulated gene 20 kDa protein; EC=3.1.13.1; Estrogen-regulated transcript 45 protein; Promyelocytic leukemia nuclear body-associated protein ISG20;)
genome : 89,190,143 - 89,198,880 (8,738)
query : 1 - 5,634 (5,634/5,634)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.13.1
InterPro :
IPR012337 : Ribonuclease H-like domain
IPR013520 : Exonuclease, RNase T/DNA polymerase III
GO :
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 3.5, cyto_nucl 3, nucl 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000671116 (
ENST00000557824
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,190,143 - 89,198,880 (8,738)
query : 1 - 5,634 (5,634/5,634)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13, cyto 12, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000671521 (
ENST00000558236
)
(Non-protein coding transcript.)
genome : 89,191,051 - 89,195,417 (4,367)
query : 1 - 260 (260/260)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000673984 (
ENST00000560746
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 89,193,484 - 89,198,881 (5,398)
query : 1 - 730 (730/730)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 13.5, nucl 9.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0012557
HIT000645383 (
ENST00000546338
)
(Ribonuclease H-like domain containing protein.)
genome : 89,195,267 - 89,198,856 (3,590)
query : 1 - 481 (481/481)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, mito 12, cyto_nucl 8, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012557)
HIX0026873
HIT000048351
(
AK128478
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,195,918 - 89,197,583 (1,666)
query : 1 - 1,666 (1,666/1,666)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 11, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026873)
HIX0222686
HIT000674584 (
ENST00000561358
)
(Hypothetical protein.)
genome : 89,340,644 - 89,341,965 (1,322)
query : 1 - 571 (571/571)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10.5, nucl 9, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222686)
HIX0026812
HIT000218119
(
U13192
)
(Non-protein coding transcript.)
genome : 89,346,667 - 89,347,046 (380)
query : 2 - 382 (381/382)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 0.997
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000198137 (
NM_001135
)
(Aggrecan core protein isoform 1 precursor.)
genome : 89,346,674 - 89,418,585 (71,912)
query : 1 - 8,543 (8,543/8,543)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, E.R. 10, nucl 2, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000204217 (
NM_013227
)
(Aggrecan core protein isoform 2 precursor.)
genome : 89,346,674 - 89,418,585 (71,912)
query : 1 - 8,840 (8,840/8,840)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, E.R. 10, nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000537510 (
ENST00000439576
)
(Aggrecan core protein isoform 2 precursor.)
genome : 89,346,674 - 89,418,585 (71,912)
query : 1 - 8,840 (8,840/8,840)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, E.R. 10, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000423520
(
AK290723
)
(Aggrecan core protein; Cartilage-specific proteoglycan core protein; CSPCP; Fragment;)
genome : 89,346,674 - 89,393,369 (46,696)
query : 1 - 2,807 (2,807/2,807)
10 exons
identity = 0.999
5'(0.997;1.000;1.000;0.994;1.000;0.997;1.000;
1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000538 : Link
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
GO :
0005540 : Molecular Function : hyaluronic acid binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, pero 6, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000051698
(
BC036445
)
(Aggrecan core protein; Cartilage-specific proteoglycan core protein; CSPCP; Fragment;)
genome : 89,346,705 - 89,394,755 (48,051)
query : 3 - 4,163 (4,161/4,178)
10 exons
identity = 0.998
5'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000538 : Link
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
GO :
0005540 : Molecular Function : hyaluronic acid binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, pero 6, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000671493 (
ENST00000558207
)
(Aggrecan core protein isoform 1 precursor.)
genome : 89,346,705 - 89,394,752 (48,048)
query : 1 - 4,159 (4,159/4,159)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, pero 6, lyso 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000195772
(
M55172
)
(Aggrecan core protein; Cartilage-specific proteoglycan core protein; CSPCP; Chondroitin sulfate proteoglycan core protein 1; Chondroitin sulfate proteoglycan 1; Contains: Aggrecan core protein 2; Precursor;)
genome : 89,346,990 - 89,417,829 (70,840)
query : 3 - 7,128 (7,126/7,137)
17 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;0.993;1.000;
0.989;0.992;0.986;1.000;0.995;0.999;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000538 : Link
IPR001304 : C-type lectin
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
IPR018378 : C-type lectin, conserved site
GO :
0005540 : Molecular Function : hyaluronic acid binding
0007155 : Biological Process : cell adhesion
0030246 : Molecular Function : carbohydrate binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, E.R. 10, nucl 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000308187 (
ENST00000352105
)
(Aggrecan core protein isoform 1 precursor.)
genome : 89,346,990 - 89,417,884 (70,895)
query : 1 - 7,526 (7,526/7,526)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, E.R. 10, nucl 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000503320
(
BC150624
)
Representative transcript
(Aggrecan core protein isoform 2 precursor.)
genome : 89,346,990 - 89,417,803 (70,814)
query : 1 - 7,571 (7,571/7,571)
18 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.992;0.997;1.000;0.993;0.995;1.000;
0.988;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000436 : Sushi/SCR/CCP domain
IPR000538 : Link
IPR001304 : C-type lectin
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
IPR018378 : C-type lectin, conserved site
GO :
0005540 : Molecular Function : hyaluronic acid binding
0007155 : Biological Process : cell adhesion
0030246 : Molecular Function : carbohydrate binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, E.R. 11, nucl 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AB119258
Equus
sp. (Horse) : AF019756
Macaca
sp. (Macaque) : ENSMMUT00000000805
Monodelphis
sp. (Opossum) : ENSMODT00000024863
Oryzias
sp. (Medaka) : ENSORLT00000000123
Pongo
sp. (Orangutan) : ENSPPYT00000007978
Rattus
sp. (Rat) : J03485
Mus
sp. (Mouse) : L07049
Canis
sp. (Dog) : U65989
Bos
sp. (Cow) : U76615
Gallus
sp. (Chicken) : U78555
Pan
sp. (Chimpanzee) : XR_025497
HIX0026812
HIT000672276 (
ENST00000559004
)
(Aggrecan core protein isoform 2 precursor.)
genome : 89,346,990 - 89,417,803 (70,814)
query : 1 - 7,628 (7,628/7,628)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, E.R. 11, nucl 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000674469 (
ENST00000561243
)
(Aggrecan core protein isoform 2 precursor.)
genome : 89,379,438 - 89,417,712 (38,275)
query : 1 - 7,593 (7,593/7,593)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, E.R. 10, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000323801
(
X80278
)
(Aggrecan core protein; Cartilage-specific proteoglycan core protein; CSPCP; Chondroitin sulfate proteoglycan core protein 1; Chondroitin sulfate proteoglycan 1; Contains: Aggrecan core protein 2; Precursor;)
genome : 89,388,734 - 89,390,537 (1,804)
query : 4 - 447 (444/447)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, cyto_nucl 10.5, extr 9, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000321613
(
X17406
)
(Aggrecan core protein; Cartilage-specific proteoglycan core protein; CSPCP; Chondroitin sulfate proteoglycan core protein 1; Chondroitin sulfate proteoglycan 1; Contains: Aggrecan core protein 2; Precursor;)
genome : 89,401,493 - 89,417,826 (16,334)
query : 1 - 1,916 (1,916/1,923)
6 exons
identity = 0.996
5'(0.996;1.000;1.000;1.000;0.995;0.995)3'
coverage = 0.996
InterPro :
IPR000436 : Sushi/SCR/CCP domain
IPR001304 : C-type lectin
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
IPR018378 : C-type lectin, conserved site
GO :
0030246 : Molecular Function : carbohydrate binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 16.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000191307
(
J05062
)
(Aggrecan core protein; Cartilage-specific proteoglycan core protein; CSPCP; Chondroitin sulfate proteoglycan core protein 1; Chondroitin sulfate proteoglycan 1; Contains: Aggrecan core protein 2; Precursor;)
genome : 89,401,967 - 89,417,712 (15,746)
query : 1 - 1,443 (1,443/1,443)
7 exons
identity = 0.997
5'(0.994;1.000;1.000;1.000;1.000;0.995;1.000)3'
coverage = 1.000
InterPro :
IPR000436 : Sushi/SCR/CCP domain
IPR000742 : Epidermal growth factor-like domain
IPR001304 : C-type lectin
IPR013032 : EGF-like, conserved site
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
IPR018378 : C-type lectin, conserved site
GO :
0005515 : Molecular Function : protein binding
0030246 : Molecular Function : carbohydrate binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 15, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000673841 (
ENST00000560601
)
(Aggrecan core protein; Cartilage-specific proteoglycan core protein; CSPCP; Chondroitin sulfate proteoglycan core protein 1; Chondroitin sulfate proteoglycan 1; Contains: Aggrecan core protein 2; Precursor;)
genome : 89,402,307 - 89,414,721 (12,415)
query : 1 - 679 (679/679)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, nucl 11.5, cyto 10.5, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000192166
(
L12234
)
(Aggrecan core protein; Cartilage-specific proteoglycan core protein; CSPCP; Precursor;)
genome : 89,411,447 - 89,411,560 (114)
query : 1 - 114 (114/114)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR000152 : EGF-type aspartate/asparagine hydroxylation site
IPR000742 : Epidermal growth factor-like domain
IPR001881 : EGF-like calcium-binding domain
IPR013032 : EGF-like, conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AB119258
Monodelphis
sp. (Opossum) : ENSMODT00000024863
Oryzias
sp. (Medaka) : ENSORLT00000000123
Tetraodon
sp. (Tetraodon) : GSTENT00006409001
Rattus
sp. (Rat) : J03485
Takifugu
sp. (Fugu) : SINFRUT00000142771
Canis
sp. (Dog) : U65989
Bos
sp. (Cow) : U76615
Gallus
sp. (Chicken) : U78555
HIX0026812
HIT000671979 (
ENST00000558704
)
(Aggrecan core protein isoform 2 precursor.)
genome : 89,416,200 - 89,418,072 (1,873)
query : 1 - 712 (712/712)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0026812
HIT000671881 (
ENST00000558604
)
(Aggrecan core protein isoform 2 precursor.)
genome : 89,416,944 - 89,418,072 (1,129)
query : 1 - 749 (749/749)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 9, nucl 7, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026812)
HIX0202187
HIT000252544
(
AY358500
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,420,525 - 89,438,742 (18,218)
query : 1 - 1,859 (1,859/1,985)
5 exons
identity = 0.997
3'(0.998;0.993;1.000;0.994;1.000)5'
coverage = 1.000
InterPro :
IPR000538 : Link
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
GO :
0005540 : Molecular Function : hyaluronic acid binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, E.R. 4, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000259343
(
BC053689
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,420,525 - 89,438,762 (18,238)
query : 1 - 3,072 (3,072/3,105)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, plas 1, mito 1, E.R. 1, lyso 1, E.R._mito 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000083545
(
AY037161
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,420,525 - 89,438,745 (18,221)
query : 1 - 1,834 (1,834/1,844)
5 exons
identity = 0.981
3'(0.964;1.000;1.000;0.994;1.000)5'
coverage = 1.000
InterPro :
IPR000538 : Link
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
GO :
0005540 : Molecular Function : hyaluronic acid binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, E.R. 4, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000260321
(
BC062320
)
Representative transcript
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,420,534 - 89,438,828 (18,295)
query : 1 - 1,986 (1,986/2,004)
7 exons
identity = 0.999
3'(1.000;0.998;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000538 : Link
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
GO :
0005540 : Molecular Function : hyaluronic acid binding
0007155 : Biological Process : cell adhesion
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 7.5, plas 7, mito 7, cyto_nucl 6.5, nucl 4.5,
pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB186131
Mus
sp. (Mouse) : AK136956
Danio
sp. (Zebrafish) : BC068325
Bos
sp. (Cow) : BC142409
Equus
sp. (Horse) : ENSECAT00000000640
Macaca
sp. (Macaque) : ENSMMUT00000000809
Oryzias
sp. (Medaka) : ENSORLT00000001910
Pongo
sp. (Orangutan) : ENSPPYT00000007980
Pan
sp. (Chimpanzee) : ENSPTRT00000049983
Tetraodon
sp. (Tetraodon) : GSTENT00018092001
Monodelphis
sp. (Opossum) : XM_001370478
Canis
sp. (Dog) : XM_846375
HIX0202187
HIT000313098 (
ENST00000359595
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,420,519 - 89,438,857 (18,339)
query : 1 - 1,980 (1,980/1,980)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, E.R. 4, plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000085643
(
AY262759
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,420,519 - 89,438,770 (18,252)
query : 1 - 1,893 (1,893/1,893)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000538 : Link
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
GO :
0005540 : Molecular Function : hyaluronic acid binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, E.R. 4, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000318038 (
NM_178232
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,420,519 - 89,438,770 (18,252)
query : 1 - 1,893 (1,893/1,893)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, E.R. 4, plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000672044 (
ENST00000558770
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,420,526 - 89,438,762 (18,237)
query : 1 - 3,071 (3,071/3,071)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, plas 1, mito 1, E.R. 1, lyso 1, E.R._mito 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000424900
(
AK292103
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,420,827 - 89,438,857 (18,031)
query : 2 - 1,673 (1,672/1,673)
5 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000538 : Link
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
GO :
0005540 : Molecular Function : hyaluronic acid binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, E.R. 4, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000424852
(
AK292055
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,420,859 - 89,438,776 (17,918)
query : 5 - 1,563 (1,559/1,563)
5 exons
identity = 0.999
3'(0.998;1.000;1.000;0.994;1.000)5'
coverage = 0.997
InterPro :
IPR000538 : Link
IPR016186 : C-type lectin-like
IPR016187 : C-type lectin fold
GO :
0005540 : Molecular Function : hyaluronic acid binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, E.R. 4, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000676066 (
ENST00000562889
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,421,062 - 89,438,828 (17,767)
query : 1 - 1,547 (1,547/1,547)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 7.5, plas 7, mito 7, cyto_nucl 6.5, nucl 4.5,
pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000675486 (
ENST00000562281
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,422,350 - 89,438,764 (16,415)
query : 1 - 801 (801/801)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0202187
HIT000676949 (
ENST00000563808
)
(Hyaluronan and proteoglycan link protein 3; Precursor;)
genome : 89,424,376 - 89,438,744 (14,369)
query : 1 - 807 (807/807)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202187)
HIX0012558
HIT000031639
(
BC003610
)
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,441,915 - 89,456,593 (14,679)
query : 1 - 1,762 (1,762/1,828)
7 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;0.989;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR008979 : Galactose-binding domain-like
IPR013032 : EGF-like, conserved site
IPR027060 : Lactadherin
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000202576 (
NM_005928
)
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,441,915 - 89,456,663 (14,749)
query : 1 - 1,988 (1,988/2,005)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, lyso 2, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000485986 (
NM_001114614
)
(Lactadherin isoform b precursor.)
genome : 89,441,915 - 89,456,663 (14,749)
query : 1 - 1,832 (1,832/1,849)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000054758
(
BX537974
)
(Lactadherin isoform a preproprotein.)
genome : 89,441,915 - 89,455,755 (13,841)
query : 1 - 1,899 (1,899/1,916)
8 exons
identity = 0.997
3'(0.996;1.000;0.995;1.000;1.000;0.989;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR008979 : Galactose-binding domain-like
IPR013032 : EGF-like, conserved site
IPR027060 : Lactadherin
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 15.5, nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000084727
(
AY141974
)
Representative transcript
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,441,914 - 89,456,611 (14,698)
query : 9 - 1,946 (1,938/1,950)
8 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;0.993;0.989;1.000;
1.000)5'
coverage = 0.998
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR008979 : Galactose-binding domain-like
IPR013032 : EGF-like, conserved site
IPR027060 : Lactadherin
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
Ortholog candidate ( ->
Evola
)
Equus
sp. (Horse) : AJ010121
Mus
sp. (Mouse) : AK155047
Bos
sp. (Cow) : BC102354
Danio
sp. (Zebrafish) : BC131837
Tetraodon
sp. (Tetraodon) : CR674047
Rattus
sp. (Rat) : DQ455823
Oryzias
sp. (Medaka) : ENSORLT00000001899
Pongo
sp. (Orangutan) : ENSPPYT00000007981
Takifugu
sp. (Fugu) : SINFRUT00000137114
Pan
sp. (Chimpanzee) : XM_001165898
Monodelphis
sp. (Opossum) : XM_001370450
Canis
sp. (Dog) : XM_545848
HIX0012558
HIT000020763
(
AK095908
)
(EGF-like repeat and discoidin I-like domain-containing protein 3; Developmentally-regulated endothelial cell locus 1 protein; Integrin-binding protein DEL1; Precursor;)
genome : 89,441,916 - 89,456,610 (14,695)
query : 1 - 1,987 (1,987/1,987)
9 exons
identity = 0.997
3'(0.999;1.000;1.000;1.000;1.000;0.984;1.000;
1.000;0.992)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR008979 : Galactose-binding domain-like
IPR013032 : EGF-like, conserved site
IPR027060 : Lactadherin
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 14.5, nucl 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000220540
(
U58516
)
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,441,916 - 89,456,610 (14,695)
query : 1 - 1,934 (1,934/1,934)
8 exons
identity = 0.996
3'(0.994;1.000;1.000;1.000;1.000;0.989;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR008979 : Galactose-binding domain-like
IPR013032 : EGF-like, conserved site
IPR027060 : Lactadherin
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000638482 (
ENST00000539437
)
(EGF-like repeat and discoidin I-like domain-containing protein 3; Developmentally-regulated endothelial cell locus 1 protein; Integrin-binding protein DEL1; Precursor;)
genome : 89,441,916 - 89,456,610 (14,695)
query : 1 - 1,987 (1,987/1,987)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, cyto 16.5, nucl 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000671308 (
ENST00000558018
)
(EGF-like repeat and discoidin I-like domain-containing protein 3; Developmentally-regulated endothelial cell locus 1 protein; Integrin-binding protein DEL1; Precursor;)
genome : 89,441,916 - 89,456,610 (14,695)
query : 1 - 1,987 (1,987/1,987)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, cyto 16.5, nucl 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000110268 (
ENST00000268151
)
(Lactadherin isoform b precursor.)
genome : 89,441,944 - 89,456,612 (14,669)
query : 1 - 1,752 (1,752/1,752)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000110267 (
ENST00000268150
)
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,441,945 - 89,456,642 (14,698)
query : 1 - 1,937 (1,937/1,937)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, lyso 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000679533 (
ENST00000566497
)
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,441,946 - 89,456,612 (14,667)
query : 1 - 1,689 (1,689/1,689)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, lyso 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000215809
(
S56151
)
(Lactadherin isoform a preproprotein.)
genome : 89,442,015 - 89,449,889 (7,875)
query : 1 - 1,267 (1,267/1,270)
5 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR008979 : Galactose-binding domain-like
IPR027060 : Lactadherin
GO :
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 11.5, nucl 6.5, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000330515
(
AK222735
)
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,442,086 - 89,456,610 (14,525)
query : 1 - 1,764 (1,764/1,764)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR008979 : Galactose-binding domain-like
IPR013032 : EGF-like, conserved site
IPR027060 : Lactadherin
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000330962
(
AK223182
)
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,442,414 - 89,456,610 (14,197)
query : 1 - 1,436 (1,436/1,436)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR008979 : Galactose-binding domain-like
IPR013032 : EGF-like, conserved site
IPR027060 : Lactadherin
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000674172 (
ENST00000560937
)
(Lactadherin isoform a preproprotein.)
genome : 89,442,529 - 89,445,191 (2,663)
query : 1 - 801 (801/801)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.5, nucl 10.5, extr 9, cyto 7.5,
E.R._mito 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000499251
(
AK304627
)
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,442,546 - 89,456,610 (14,065)
query : 1 - 1,172 (1,172/1,172)
7 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;0.984;0.992)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR008979 : Galactose-binding domain-like
IPR027060 : Lactadherin
GO :
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, lyso 3, mito 2, E.R. 2, golg 2, E.R._mito 2,
E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000641923 (
ENST00000542878
)
(Lactadherin isoform a preproprotein.)
genome : 89,442,546 - 89,456,610 (14,065)
query : 1 - 1,172 (1,172/1,172)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000431506
(
AK312640
)
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,442,626 - 89,456,610 (13,985)
query : 1 - 1,224 (1,224/1,224)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR008979 : Galactose-binding domain-like
IPR013032 : EGF-like, conserved site
IPR027060 : Lactadherin
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000099868
(
BT006948
)
(Lactadherin; Breast epithelial antigen BA46; HMFG; MFGM; Milk fat globule-EGF factor 8; MFG-E8; SED1; Contains: Lactadherin short form; Contains: Medin; Precursor;)
genome : 89,442,626 - 89,456,550 (13,925)
query : 1 - 1,008 (1,008/1,008)
7 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.989;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR000742 : Epidermal growth factor-like domain
IPR008979 : Galactose-binding domain-like
IPR013032 : EGF-like, conserved site
IPR027060 : Lactadherin
GO :
0005515 : Molecular Function : protein binding
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000671319 (
ENST00000558029
)
(Lactadherin isoform b precursor.)
genome : 89,444,782 - 89,456,593 (11,812)
query : 1 - 849 (849/849)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012559
HIT000017024
(
AK092157
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,445,417 - 89,447,877 (2,461)
query : 1 - 2,461 (2,461/2,461)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012559)
HIX0222619
HIT000673794 (
ENST00000560553
)
(Hypothetical short protein.)
genome : 89,447,021 - 89,448,159 (1,139)
query : 1 - 500 (500/500)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, extr 11, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222619)
HIX0012558
HIT000672528 (
ENST00000559259
)
(Lactadherin isoform b precursor.)
genome : 89,448,613 - 89,449,947 (1,335)
query : 1 - 611 (611/611)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000673248 (
ENST00000559997
)
(Lactadherin isoform b precursor.)
genome : 89,448,630 - 89,456,610 (7,981)
query : 1 - 531 (531/531)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000429223
(
AK310357
)
(Lactadherin isoform b precursor.)
genome : 89,449,294 - 89,456,610 (7,317)
query : 1 - 1,031 (1,031/1,031)
3 exons
identity = 0.997
3'(0.999;0.989;1.000)5'
coverage = 1.000
InterPro :
IPR000421 : Coagulation factor 5/8 C-terminal type domain
IPR008979 : Galactose-binding domain-like
IPR027060 : Lactadherin
GO :
0007155 : Biological Process : cell adhesion
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000671633 (
ENST00000558352
)
(Lactadherin isoform b precursor.)
genome : 89,449,294 - 89,456,610 (7,317)
query : 1 - 1,031 (1,031/1,031)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000673025 (
ENST00000559770
)
(Lactadherin isoform b precursor.)
genome : 89,449,846 - 89,453,356 (3,511)
query : 1 - 680 (680/680)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, mito 2.5, mito_pero 2.5, plas 2, pero 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000672413 (
ENST00000559143
)
(Lactadherin isoform b precursor.)
genome : 89,453,023 - 89,453,488 (466)
query : 1 - 358 (358/358)
2 exons
identity = 0.989
3'(1.000;0.983)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto 3.5, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000672047 (
ENST00000558773
)
(Lactadherin; MFGM; Milk fat globule-EGF factor 8; MFG-E8; O-acetyl GD3 ganglioside synthase; AGS; SED1; Precursor;)
genome : 89,453,435 - 89,456,548 (3,114)
query : 1 - 534 (534/534)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0012558
HIT000671234 (
ENST00000557944
)
(Hypothetical protein.)
genome : 89,454,011 - 89,456,593 (2,583)
query : 1 - 435 (435/435)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, plas 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012558)
HIX0222509
HIT000672609 (
ENST00000559344
)
(Conserved hypothetical protein.)
genome : 89,495,914 - 89,496,691 (778)
query : 1 - 470 (470/470)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222509)
HIX0222683
HIT000674567 (
ENST00000561341
)
(Intermediate filament protein family protein.)
genome : 89,503,301 - 89,504,277 (977)
query : 1 - 977 (977/977)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 8, nucl 2, mito 2, pero 2, mito_pero 2,
mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222683)
HIX0222771
HIT000678962 (
ENST00000565906
)
(F-actin-capping protein subunit alpha family protein.)
genome : 89,532,750 - 89,533,476 (727)
query : 1 - 727 (727/727)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 12, mito 5, nucl 3, extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222771)
HIX0222751
HIT000677976 (
ENST00000564874
)
(Conserved hypothetical protein.)
genome : 89,581,208 - 89,581,517 (310)
query : 1 - 310 (310/310)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222751)
HIX0222772
HIT000678993 (
ENST00000565938
)
(Hypothetical short protein.)
genome : 89,584,454 - 89,626,050 (41,597)
query : 1 - 597 (597/597)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222772)
HIX0222213
HIT000678620 (
ENST00000565547
)
(Hypothetical short protein.)
genome : 89,630,309 - 89,631,172 (864)
query : 1 - 450 (450/450)
2 exons
identity = 0.991
3'(1.000;0.985)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 9, cyto_nucl 2, nucl 1.5, cyto 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222213)
HIX0019138
HIT000682354 (
ENST00000569411
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,630,690 - 89,698,621 (67,932)
query : 1 - 558 (558/558)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0222213
HIT000683030 (
ENST00000570120
)
(Hypothetical short protein.)
genome : 89,630,794 - 89,631,498 (705)
query : 1 - 460 (460/460)
2 exons
identity = 0.980
3'(0.980;0.986)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 9, cyto_nucl 2, nucl 1.5, cyto 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222213)
HIX0019138
HIT000203553 (
NM_007011
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,381 - 89,745,591 (114,211)
query : 1 - 9,133 (9,133/9,159)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000214118 (
NM_152924
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,381 - 89,745,591 (114,211)
query : 1 - 8,735 (8,735/8,761)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000308284 (
ENST00000352732
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,381 - 89,745,591 (114,211)
query : 1 - 8,735 (8,735/8,735)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000243784
(
AF546700
)
Representative transcript
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,648 - 89,740,196 (108,549)
query : 2 - 3,071 (3,070/3,095)
11 exons
identity = 0.998
5'(0.986;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.997)3'
coverage = 1.000
EC number :
EC 3.1.1.-
InterPro :
IPR000073 : Alpha/beta hydrolase fold-1
IPR000952 : Uncharacterised protein family UPF0017, hydrolase-like, conserved site
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB168745
Mus
sp. (Mouse) : AF546701
Bos
sp. (Cow) : BC102660
Danio
sp. (Zebrafish) : BC124444
Gallus
sp. (Chicken) : BX930579
Tetraodon
sp. (Tetraodon) : CR687891
Danio
sp. (Zebrafish) : ENSDART00000103525
Monodelphis
sp. (Opossum) : ENSMODT00000024852
Oryzias
sp. (Medaka) : ENSORLT00000001852
Oryzias
sp. (Medaka) : ENSORLT00000002836
Pongo
sp. (Orangutan) : ENSPPYT00000007982
Tetraodon
sp. (Tetraodon) : GSTENT00018094001
Takifugu
sp. (Fugu) : SINFRUT00000137338
Takifugu
sp. (Fugu) : SINFRUT00000165389
Rattus
sp. (Rat) : XM_001064693
Pan
sp. (Chimpanzee) : XM_001166151
Equus
sp. (Horse) : XM_001503110
Canis
sp. (Dog) : XM_854569
HIX0019138
HIT000266312
(
BC090052
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,647 - 89,738,982 (107,336)
query : 1 - 1,860 (1,860/1,891)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.-
InterPro :
IPR000073 : Alpha/beta hydrolase fold-1
IPR000952 : Uncharacterised protein family UPF0017, hydrolase-like, conserved site
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000038574
(
BC019248
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,661 - 89,738,982 (107,322)
query : 12 - 2,254 (2,243/2,269)
15 exons
identity = 0.999
5'(0.993;1.000;1.000;1.000;1.000;0.990;1.000;
1.000;1.000;1.000;0.989;1.000;1.000;1.000;
1.000)3'
coverage = 0.995
EC number :
EC 3.1.1.-
InterPro :
IPR000073 : Alpha/beta hydrolase fold-1
IPR000952 : Uncharacterised protein family UPF0017, hydrolase-like, conserved site
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000682489 (
ENST00000569550
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,653 - 89,659,725 (28,073)
query : 1 - 557 (557/557)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000677978 (
ENST00000564876
)
(Non-protein coding transcript.)
genome : 89,631,653 - 89,657,047 (25,395)
query : 1 - 542 (542/542)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000678159 (
ENST00000565066
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,657 - 89,695,083 (63,427)
query : 1 - 845 (845/845)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, E.R. 3, pero 2, E.R._mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000679027 (
ENST00000565973
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,661 - 89,738,982 (107,322)
query : 1 - 2,347 (2,347/2,347)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000250265
(
AL110291
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,706 - 89,695,017 (63,312)
query : 1 - 500 (500/500)
4 exons
identity = 0.980
5'(1.000;0.930;0.990;0.991)3'
coverage = 1.000
EC number :
EC 3.1.1.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000330621
(
AK222841
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,709 - 89,738,882 (107,174)
query : 1 - 1,698 (1,698/1,698)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.995)3'
coverage = 1.000
EC number :
EC 3.1.1.-
InterPro :
IPR000073 : Alpha/beta hydrolase fold-1
IPR000952 : Uncharacterised protein family UPF0017, hydrolase-like, conserved site
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000423137
(
AK290340
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,710 - 89,738,771 (107,062)
query : 2 - 1,587 (1,586/1,587)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.991;1.000;1.000;1.000)3'
coverage = 0.999
EC number :
EC 3.1.1.-
InterPro :
IPR000073 : Alpha/beta hydrolase fold-1
IPR000952 : Uncharacterised protein family UPF0017, hydrolase-like, conserved site
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, E.R. 4, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000491451
(
AK296827
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,711 - 89,739,194 (107,484)
query : 1 - 1,593 (1,593/1,593)
9 exons
identity = 0.996
5'(1.000;1.000;0.980;0.984;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.1.1.-
InterPro :
IPR000073 : Alpha/beta hydrolase fold-1
IPR000952 : Uncharacterised protein family UPF0017, hydrolase-like, conserved site
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, plas 1, mito 1, E.R. 1, lyso 1, E.R._mito 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000330863
(
AK223083
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,711 - 89,739,067 (107,357)
query : 1 - 1,881 (1,881/1,881)
11 exons
identity = 0.999
5'(1.000;1.000;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.998)3'
coverage = 1.000
EC number :
EC 3.1.1.-
InterPro :
IPR000073 : Alpha/beta hydrolase fold-1
IPR000952 : Uncharacterised protein family UPF0017, hydrolase-like, conserved site
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000678884 (
ENST00000565825
)
(Hypothetical short protein.)
genome : 89,631,713 - 89,657,022 (25,310)
query : 1 - 583 (583/583)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000321302
(
X12433
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,631,735 - 89,738,977 (107,243)
query : 10 - 1,776 (1,767/1,788)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.988
EC number :
EC 3.1.1.-
InterPro :
IPR000073 : Alpha/beta hydrolase fold-1
IPR000952 : Uncharacterised protein family UPF0017, hydrolase-like, conserved site
IPR029058 : Alpha/Beta hydrolase fold
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000675459 (
ENST00000562254
)
(Conserved hypothetical protein.)
genome : 89,631,741 - 89,637,595 (5,855)
query : 1 - 787 (787/787)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000309293 (
ENST00000355100
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,645,672 - 89,745,591 (99,920)
query : 1 - 8,688 (8,688/8,688)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, plas 1, mito 1, pero 1, lyso 1,
mito_pero 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0222411
HIT000671497 (
ENST00000558211
)
(High mobility group box domain containing protein.)
genome : 89,678,778 - 89,679,726 (949)
query : 1 - 949 (949/949)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222411)
HIX0019138
HIT000675283 (
ENST00000562073
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,694,908 - 89,726,604 (31,697)
query : 19 - 588 (570/588)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.969
EC number :
EC 3.1.1.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 10, mito 7, nucl 3.5, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000453588
(
DQ587057
)
(Non-protein coding transcript.)
genome : 89,695,028 - 89,695,057 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000681292 (
ENST00000568308
)
(Abhydrolase domain-containing protein 2; EC=3.1.1.-; Lung alpha/beta hydrolase 2; Protein PHPS1-2;)
genome : 89,728,646 - 89,736,684 (8,039)
query : 1 - 502 (502/502)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13.5, cyto 10.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000450735
(
DQ584204
)
(Non-protein coding transcript.)
genome : 89,738,589 - 89,738,618 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000463048
(
DQ596517
)
(Non-protein coding transcript.)
genome : 89,739,220 - 89,739,249 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000250211
(
AL109729
)
(Conserved hypothetical protein.)
genome : 89,739,235 - 89,740,196 (962)
query : 1 - 962 (962/981)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 6, cyto 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000047432
(
AK127559
)
(Conserved hypothetical protein.)
genome : 89,740,465 - 89,743,958 (3,494)
query : 1 - 3,493 (3,493/3,493)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, nucl 10.5, extr 10, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000442609
(
DQ576078
)
(Non-protein coding transcript.)
genome : 89,740,760 - 89,740,790 (31)
query : 1 - 31 (31/32)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.969
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0115359
HIT000044962
(
AK125089
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,741,223 - 89,743,960 (2,738)
query : 1 - 2,737 (2,737/2,737)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 11.5, cyto_nucl 7.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0115359)
HIX0019138
HIT000340839
(
CR749694
)
(Vesicle-associated membrane protein-associated protein A; VAMP-A; VAMP-associated protein A; VAP-A; 33 kDa VAMP-associated protein; VAP-33;)
genome : 89,741,673 - 89,745,586 (3,914)
query : 64 - 3,976 (3,913/3,996)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.984
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.6667, nucl 13.5, extr 9, cyto 8.5,
cyto_pero 6.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000466153
(
DQ599622
)
(Non-protein coding transcript.)
genome : 89,741,843 - 89,741,873 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000441109
(
DQ574578
)
(Non-protein coding transcript.)
genome : 89,741,991 - 89,742,021 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000038190
(
BC017905
)
(Conserved hypothetical protein.)
genome : 89,742,968 - 89,743,956 (989)
query : 1 - 989 (989/1,020)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000020540
(
AK095685
)
(Vesicle-associated membrane protein-associated protein A; VAMP-A; VAMP-associated protein A; VAP-A; 33 kDa VAMP-associated protein; VAP-33;)
genome : 89,743,094 - 89,745,577 (2,484)
query : 1 - 2,485 (2,485/2,485)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.6667, nucl 13.5, extr 9, cyto 8.5,
cyto_pero 6.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ851481
Mus
sp. (Mouse) : AK008233
Oryzias
sp. (Medaka) : ENSORLT00000005149
Tetraodon
sp. (Tetraodon) : GSTENT00027681001
Takifugu
sp. (Fugu) : SINFRUT00000156024
Rattus
sp. (Rat) : XM_001054144
Macaca
sp. (Macaque) : XR_011107
Pan
sp. (Chimpanzee) : XR_024960
Monodelphis
sp. (Opossum) : XR_030221
HIX0222724
HIT000676296 (
ENST00000563131
)
(Conserved hypothetical protein.)
genome : 89,744,322 - 89,744,999 (678)
query : 1 - 678 (678/678)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 13, pero 6, mito 4, nucl 3, cyto 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222724)
HIX0019138
HIT000447652
(
DQ581121
)
(Non-protein coding transcript.)
genome : 89,744,403 - 89,744,432 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0019138
HIT000003029
(
AK000554
)
(Vesicle-associated membrane protein-associated protein A; VAMP-A; VAMP-associated protein A; VAP-A; 33 kDa VAMP-associated protein; VAP-33;)
genome : 89,744,932 - 89,745,585 (654)
query : 1 - 654 (654/672)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 12, extr 10, cyto 5, extr_plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019138)
HIX0012561
HIT000031774
(
BC004199
)
Representative transcript
(Retinaldehyde-binding protein 1; Cellular retinaldehyde-binding protein;)
genome : 89,753,100 - 89,764,824 (11,725)
query : 1 - 1,652 (1,652/1,670)
9 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001071 : Cellular retinaldehyde binding/alpha-tocopherol transport
IPR001251 : CRAL-TRIO domain
IPR011074 : CRAL/TRIO, N-terminal domain
GO :
0005215 : Molecular Function : transporter activity
0005622 : Cellular Component : intracellular
0006810 : Biological Process : transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 13.5, nucl 9.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012561)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK140622
Danio
sp. (Zebrafish) : BC065863
Gallus
sp. (Chicken) : BX935536
Tetraodon
sp. (Tetraodon) : CR696943
Oryzias
sp. (Medaka) : ENSORLT00000001837
Pongo
sp. (Orangutan) : ENSPPYT00000007983
Takifugu
sp. (Fugu) : SINFRUT00000137344
Rattus
sp. (Rat) : XM_001064754
Macaca
sp. (Macaque) : XM_001091538
Pan
sp. (Chimpanzee) : XM_001166281
Monodelphis
sp. (Opossum) : XM_001370320
Equus
sp. (Horse) : XM_001917523
Canis
sp. (Dog) : XM_549634
HIX0012561
HIT000197371 (
NM_000326
)
(Retinaldehyde-binding protein 1; Cellular retinaldehyde-binding protein;)
genome : 89,753,098 - 89,764,922 (11,825)
query : 1 - 1,752 (1,752/1,752)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 13.5, nucl 9.5, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012561)
HIX0012561
HIT000110259 (
ENST00000268125
)
(Retinaldehyde-binding protein 1; Cellular retinaldehyde-binding protein;)
genome : 89,753,100 - 89,764,982 (11,883)
query : 1 - 1,810 (1,810/1,810)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 13.5, nucl 9.5, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012561)
HIX0012561
HIT000676416 (
ENST00000563254
)
(Retinaldehyde-binding protein 1; Cellular retinaldehyde-binding protein;)
genome : 89,753,233 - 89,755,074 (1,842)
query : 1 - 609 (609/609)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14, mito 6, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012561)
HIX0012561
HIT000191257
(
J04213
)
(Retinaldehyde-binding protein 1; Cellular retinaldehyde-binding protein;)
genome : 89,753,336 - 89,763,049 (9,714)
query : 2 - 1,317 (1,316/1,317)
8 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
InterPro :
IPR001071 : Cellular retinaldehyde binding/alpha-tocopherol transport
IPR001251 : CRAL-TRIO domain
IPR011074 : CRAL/TRIO, N-terminal domain
GO :
0005215 : Molecular Function : transporter activity
0005622 : Cellular Component : intracellular
0006810 : Biological Process : transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 13.5, nucl 9.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012561)
HIX0012561
HIT000431323
(
AK312457
)
(Retinaldehyde-binding protein 1; Cellular retinaldehyde-binding protein;)
genome : 89,753,516 - 89,764,810 (11,295)
query : 1 - 1,222 (1,222/1,222)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001071 : Cellular retinaldehyde binding/alpha-tocopherol transport
IPR001251 : CRAL-TRIO domain
IPR011074 : CRAL/TRIO, N-terminal domain
GO :
0005215 : Molecular Function : transporter activity
0005622 : Cellular Component : intracellular
0006810 : Biological Process : transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 13.5, nucl 9.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012561)
HIX0012561
HIT000680785 (
ENST00000567787
)
(Retinaldehyde-binding protein 1; Cellular retinaldehyde-binding protein;)
genome : 89,753,981 - 89,764,845 (10,865)
query : 1 - 782 (782/782)
8 exons
identity = 0.996
3'(1.000;1.000;1.000;0.933;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012561)
HIX0012561
HIT000677512 (
ENST00000564388
)
(Non-protein coding transcript.)
genome : 89,762,793 - 89,764,836 (2,044)
query : 1 - 369 (369/369)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012561)
HIX0012561
HIT000394666
(
DQ980611
)
(Hypothetical short protein.)
genome : 89,763,021 - 89,765,004 (1,984)
query : 1 - 309 (309/309)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, extr 12, cyto 4, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012561)
HIX0132786
HIT000440354
(
DQ573823
)
Representative transcript
(Non-protein coding transcript.)
genome : 89,783,813 - 89,783,842 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0132786)
HIX0012562
HIT000115519 (
ENST00000300027
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,180 - 89,860,492 (73,313)
query : 1 - 4,713 (4,713/4,713)
37 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000317354 (
NM_018193
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,194 - 89,860,362 (73,169)
query : 1 - 4,569 (4,569/4,569)
37 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 12
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000485896 (
NM_001113378
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,194 - 89,860,362 (73,169)
query : 1 - 4,749 (4,749/4,749)
38 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.994;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 12
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000435596
(
BC146804
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,198 - 89,860,360 (73,163)
query : 1 - 4,744 (4,744/4,759)
38 exons
identity = 0.999
5'(1.000;1.000;1.000;0.992;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000;0.994;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR026171 : Fanconi anemia group I protein
IPR029305 : FANCI solenoid 1 cap
IPR029308 : FANCI solenoid 1 domain
IPR029310 : FANCI helical domain 1
IPR029312 : FANCI helical domain 2
IPR029313 : FANCI solenoid 3 domain
IPR029314 : FANCI solenoid 4 domain
IPR029315 : FANCI solenoid 2 domain
GO :
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000118813 (
ENST00000310775
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,198 - 89,860,360 (73,163)
query : 1 - 4,743 (4,743/4,743)
38 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000681643 (
ENST00000568670
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,204 - 89,803,996 (16,793)
query : 1 - 285 (285/285)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, nucl 4, mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000680886 (
ENST00000567891
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,206 - 89,805,078 (17,873)
query : 1 - 584 (584/584)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12.5, nucl 5.5, extr 3, mito 2,
pero 2, extr_plas 2, mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000678342 (
ENST00000565255
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,221 - 89,807,268 (20,048)
query : 1 - 754 (754/754)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 13.6667, cyto_plas 12.1667,
cyto_pero 11.6667, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000678019 (
ENST00000564920
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,221 - 89,804,904 (17,684)
query : 1 - 562 (562/562)
6 exons
identity = 0.995
5'(1.000;0.975;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, nucl 7.5, extr 4, mito 2,
pero 2, mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000011790
(
AK055176
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,235 - 89,859,712 (72,478)
query : 1 - 3,690 (3,690/3,690)
36 exons
identity = 0.998
5'(1.000;1.000;0.986;0.992;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.990;1.000;
0.984;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.981;
0.988)3'
coverage = 1.000
InterPro :
IPR026171 : Fanconi anemia group I protein
IPR029305 : FANCI solenoid 1 cap
IPR029308 : FANCI solenoid 1 domain
IPR029310 : FANCI helical domain 1
IPR029312 : FANCI helical domain 2
IPR029313 : FANCI solenoid 3 domain
IPR029314 : FANCI solenoid 4 domain
IPR029315 : FANCI solenoid 2 domain
GO :
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000545545 (
ENST00000447611
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,235 - 89,859,712 (72,478)
query : 1 - 3,690 (3,690/3,690)
36 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000501523
(
BC140769
)
Representative transcript
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,237 - 89,859,883 (72,647)
query : 1 - 4,227 (4,227/4,227)
38 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.994;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026171 : Fanconi anemia group I protein
IPR029305 : FANCI solenoid 1 cap
IPR029308 : FANCI solenoid 1 domain
IPR029310 : FANCI helical domain 1
IPR029312 : FANCI helical domain 2
IPR029313 : FANCI solenoid 3 domain
IPR029314 : FANCI solenoid 4 domain
IPR029315 : FANCI solenoid 2 domain
GO :
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC027836
Danio
sp. (Zebrafish) : BC124608
Equus
sp. (Horse) : ENSECAT00000006043
Oryzias
sp. (Medaka) : ENSORLT00000014606
Pongo
sp. (Orangutan) : ENSPPYT00000007984
Tetraodon
sp. (Tetraodon) : GSTENT00022826001
Takifugu
sp. (Fugu) : SINFRUT00000144287
Rattus
sp. (Rat) : XM_001064803
Macaca
sp. (Macaque) : XM_001092590
Pan
sp. (Chimpanzee) : XM_001166991
Monodelphis
sp. (Opossum) : XM_001370232
Danio
sp. (Zebrafish) : XM_001921104
Gallus
sp. (Chicken) : XM_413864
Canis
sp. (Dog) : XM_545849
Bos
sp. (Cow) : XM_600723
HIX0012562
HIT000502893
(
BC144483
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,237 - 89,859,883 (72,647)
query : 1 - 4,227 (4,227/4,227)
38 exons
identity = 0.999
5'(1.000;1.000;1.000;0.992;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;0.994;0.994;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000)3'
coverage = 1.000
InterPro :
IPR026171 : Fanconi anemia group I protein
IPR029305 : FANCI solenoid 1 cap
IPR029308 : FANCI solenoid 1 domain
IPR029310 : FANCI helical domain 1
IPR029312 : FANCI helical domain 2
IPR029313 : FANCI solenoid 3 domain
IPR029314 : FANCI solenoid 4 domain
IPR029315 : FANCI solenoid 2 domain
GO :
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000683021 (
ENST00000570110
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,239 - 89,802,299 (15,061)
query : 1 - 528 (528/528)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 13, extr 6, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000031838
(
BC004277
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,248 - 89,807,876 (20,629)
query : 1 - 1,064 (1,064/1,096)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.992;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026171 : Fanconi anemia group I protein
IPR029305 : FANCI solenoid 1 cap
IPR029308 : FANCI solenoid 1 domain
GO :
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 15.5, nucl 7, plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000680987 (
ENST00000567996
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,248 - 89,807,878 (20,631)
query : 1 - 1,066 (1,066/1,066)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 15.5, nucl 7, plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000549327 (
ENST00000451393
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,248 - 89,807,873 (20,626)
query : 1 - 1,061 (1,061/1,061)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 15.5, nucl 7, plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000676412 (
ENST00000563250
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,787,265 - 89,807,235 (19,971)
query : 1 - 700 (700/700)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12.1667, cyto_pero 11.1667,
cyto_plas 11.1667, nucl 4.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000678595 (
ENST00000565522
)
(Conserved hypothetical protein.)
genome : 89,787,481 - 89,857,877 (70,397)
query : 1 - 233 (233/233)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 15.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000677749 (
ENST00000564636
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,790,833 - 89,802,581 (11,749)
query : 1 - 777 (777/777)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 13, extr 6, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000395498
(
EF469766
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,790,879 - 89,859,690 (68,812)
query : 1 - 3,987 (3,987/3,987)
37 exons
identity = 0.999
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;0.989;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.991;1.000)3'
coverage = 1.000
InterPro :
IPR026171 : Fanconi anemia group I protein
IPR029305 : FANCI solenoid 1 cap
IPR029308 : FANCI solenoid 1 domain
IPR029310 : FANCI helical domain 1
IPR029312 : FANCI helical domain 2
IPR029313 : FANCI solenoid 3 domain
IPR029314 : FANCI solenoid 4 domain
IPR029315 : FANCI solenoid 2 domain
GO :
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000469140
(
EF567077
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,790,879 - 89,859,690 (68,812)
query : 1 - 3,987 (3,987/3,987)
37 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026171 : Fanconi anemia group I protein
IPR029305 : FANCI solenoid 1 cap
IPR029308 : FANCI solenoid 1 domain
IPR029310 : FANCI helical domain 1
IPR029312 : FANCI helical domain 2
IPR029313 : FANCI solenoid 3 domain
IPR029314 : FANCI solenoid 4 domain
IPR029315 : FANCI solenoid 2 domain
GO :
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000683134 (
ENST00000570225
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,805,069 - 89,811,862 (6,794)
query : 1 - 526 (526/526)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 15.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000004055
(
AK001581
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,806,668 - 89,859,675 (53,008)
query : 1 - 3,268 (3,268/3,268)
31 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 17, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000675108 (
ENST00000561894
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,806,668 - 89,859,675 (53,008)
query : 1 - 3,268 (3,268/3,268)
31 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 17, cyto 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000010836
(
AK027564
)
(Fanconi anemia group I protein isoform 2.)
genome : 89,817,447 - 89,860,362 (42,916)
query : 1 - 3,457 (3,457/3,457)
26 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.992;0.988;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.991;0.997)3'
coverage = 1.000
InterPro :
IPR026171 : Fanconi anemia group I protein
IPR029312 : FANCI helical domain 2
IPR029313 : FANCI solenoid 3 domain
IPR029314 : FANCI solenoid 4 domain
IPR029315 : FANCI solenoid 2 domain
GO :
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 13, cyto 10.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000001509
(
AB058697
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,821,911 - 89,860,359 (38,449)
query : 1 - 4,671 (4,671/4,671)
24 exons
identity = 0.999
5'(0.989;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000;0.989;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;0.997)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15, cyto_nucl 14, extr 7, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000679921 (
ENST00000566895
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,821,911 - 89,860,359 (38,449)
query : 1 - 4,670 (4,670/4,670)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 12.5, extr 10, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000677477 (
ENST00000564350
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,826,224 - 89,833,823 (7,600)
query : 1 - 761 (761/761)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0012562
HIT000090476
(
BC021859
)
(Fanconi anemia group I protein; Protein FACI;)
genome : 89,838,258 - 89,859,673 (21,416)
query : 1 - 1,402 (1,402/1,428)
15 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.991;
1.000)3'
coverage = 1.000
InterPro :
IPR026171 : Fanconi anemia group I protein
IPR029313 : FANCI solenoid 3 domain
IPR029314 : FANCI solenoid 4 domain
GO :
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 16.5, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0173013
HIT000460834_13
(
DQ594303
)
Representative transcript
(Non-protein coding transcript.)
genome : 89,839,890 - 89,839,919 (30)
query : 1 - 30 (30/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.968
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173013)
HIX0012562
HIT000679648 (
ENST00000566615
)
(Fanconi anemia group I protein homolog; Protein FACI;)
genome : 89,851,090 - 89,859,657 (8,568)
query : 1 - 537 (537/537)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, mito 11, mito_nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012562)
HIX0026803
HIT000053497
(
BC050559
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,558 - 89,878,007 (18,450)
query : 1 - 4,395 (4,395/4,503)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
InterPro :
IPR001098 : DNA-directed DNA polymerase, family A, palm domain
IPR002297 : DNA-directed DNA-polymerase, family A, mitochondria
IPR012337 : Ribonuclease H-like domain
IPR019760 : DNA-directed DNA polymerase, family A, conserved site
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0003887 : Molecular Function : DNA-directed DNA polymerase activity
0005760 : Cellular Component : gamma DNA polymerase complex
0006260 : Biological Process : DNA replication
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000325036
(
X98093
)
Representative transcript
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,549 - 89,878,026 (18,478)
query : 1 - 4,435 (4,435/4,465)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
InterPro :
IPR001098 : DNA-directed DNA polymerase, family A, palm domain
IPR002297 : DNA-directed DNA-polymerase, family A, mitochondria
IPR012337 : Ribonuclease H-like domain
IPR019760 : DNA-directed DNA polymerase, family A, conserved site
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0003887 : Molecular Function : DNA-directed DNA polymerase activity
0005760 : Cellular Component : gamma DNA polymerase complex
0006260 : Biological Process : DNA replication
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AJ245646
Mus
sp. (Mouse) : AK133584
Bos
sp. (Cow) : BC149810
Danio
sp. (Zebrafish) : ENSDART00000103152
Oryzias
sp. (Medaka) : ENSORLT00000014663
Pongo
sp. (Orangutan) : ENSPPYT00000007985
Pan
sp. (Chimpanzee) : ENSPTRT00000013707
Tetraodon
sp. (Tetraodon) : GSTENT00022827001
Takifugu
sp. (Fugu) : SINFRUT00000144291
Gallus
sp. (Chicken) : U60297
Macaca
sp. (Macaque) : XM_001092360
Equus
sp. (Horse) : XM_001503047
Danio
sp. (Zebrafish) : XM_001921293
Canis
sp. (Dog) : XM_545850
Monodelphis
sp. (Opossum) : XR_030327
HIX0026803
HIT000199571 (
NM_002693
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,536 - 89,878,026 (18,491)
query : 1 - 4,448 (4,448/4,464)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000486150 (
NM_001126131
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,536 - 89,878,026 (18,491)
query : 1 - 4,436 (4,436/4,452)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000052715
(
BC042571
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,562 - 89,878,011 (18,450)
query : 1 - 4,407 (4,407/4,440)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
InterPro :
IPR001098 : DNA-directed DNA polymerase, family A, palm domain
IPR002297 : DNA-directed DNA-polymerase, family A, mitochondria
IPR012337 : Ribonuclease H-like domain
IPR019760 : DNA-directed DNA polymerase, family A, conserved site
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0003887 : Molecular Function : DNA-directed DNA polymerase activity
0005760 : Cellular Component : gamma DNA polymerase complex
0006260 : Biological Process : DNA replication
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000110258 (
ENST00000268124
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,534 - 89,878,078 (18,545)
query : 1 - 4,502 (4,502/4,502)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000049895
(
AK130624
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,534 - 89,864,133 (4,600)
query : 1 - 1,324 (1,324/1,324)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.992;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
InterPro :
IPR001098 : DNA-directed DNA polymerase, family A, palm domain
IPR002297 : DNA-directed DNA-polymerase, family A, mitochondria
GO :
0003677 : Molecular Function : DNA binding
0003887 : Molecular Function : DNA-directed DNA polymerase activity
0005760 : Cellular Component : gamma DNA polymerase complex
0006260 : Biological Process : DNA replication
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 14, nucl 6, extr 5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000220632
(
U60325
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,558 - 89,877,146 (17,589)
query : 1 - 4,302 (4,302/4,320)
22 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
InterPro :
IPR001098 : DNA-directed DNA polymerase, family A, palm domain
IPR002297 : DNA-directed DNA-polymerase, family A, mitochondria
IPR012337 : Ribonuclease H-like domain
IPR019760 : DNA-directed DNA polymerase, family A, conserved site
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0003887 : Molecular Function : DNA-directed DNA polymerase activity
0005760 : Cellular Component : gamma DNA polymerase complex
0006260 : Biological Process : DNA replication
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000101845
(
D84103
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,546 - 89,877,085 (17,540)
query : 1 - 4,263 (4,263/4,263)
22 exons
identity = 0.998
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.994;1.000;
0.992)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
InterPro :
IPR001098 : DNA-directed DNA polymerase, family A, palm domain
IPR002297 : DNA-directed DNA-polymerase, family A, mitochondria
IPR012337 : Ribonuclease H-like domain
IPR019760 : DNA-directed DNA polymerase, family A, conserved site
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0003887 : Molecular Function : DNA-directed DNA polymerase activity
0005760 : Cellular Component : gamma DNA polymerase complex
0006260 : Biological Process : DNA replication
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000540221 (
ENST00000442287
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,551 - 89,878,092 (18,542)
query : 1 - 4,487 (4,487/4,487)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000629444 (
ENST00000530292
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,570 - 89,864,061 (4,492)
query : 1 - 1,315 (1,315/1,315)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 15, nucl 7.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000466465
(
DQ599934
)
(Non-protein coding transcript.)
genome : 89,859,740 - 89,859,770 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000625879 (
ENST00000526671
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,748 - 89,861,059 (1,312)
query : 1 - 764 (764/764)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 6.16667, mito 6, cyto 5.5,
cyto_pero 5, mito_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000424078
(
AK291281
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,859,879 - 89,878,045 (18,167)
query : 1 - 4,124 (4,124/4,124)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
InterPro :
IPR001098 : DNA-directed DNA polymerase, family A, palm domain
IPR002297 : DNA-directed DNA-polymerase, family A, mitochondria
IPR012337 : Ribonuclease H-like domain
IPR019760 : DNA-directed DNA polymerase, family A, conserved site
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0003887 : Molecular Function : DNA-directed DNA polymerase activity
0005760 : Cellular Component : gamma DNA polymerase complex
0006260 : Biological Process : DNA replication
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000445528
(
DQ578997
)
(Non-protein coding transcript.)
genome : 89,861,864 - 89,861,894 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000629859 (
ENST00000530715
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,862,499 - 89,866,658 (4,160)
query : 1 - 372 (372/372)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 9.5, cyto 9.5, mito 8, extr 4,
E.R._mito 4, mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000628049 (
ENST00000528881
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,864,051 - 89,866,742 (2,692)
query : 1 - 598 (598/598)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 14.5, nucl 7, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000250237
(
AL110092
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,864,051 - 89,866,660 (2,610)
query : 1 - 688 (688/688)
6 exons
identity = 0.990
3'(0.974;1.000;0.992;1.000;1.000;0.962)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
InterPro :
IPR001098 : DNA-directed DNA polymerase, family A, palm domain
IPR002297 : DNA-directed DNA-polymerase, family A, mitochondria
IPR019760 : DNA-directed DNA polymerase, family A, conserved site
GO :
0003677 : Molecular Function : DNA binding
0003887 : Molecular Function : DNA-directed DNA polymerase activity
0005760 : Cellular Component : gamma DNA polymerase complex
0006260 : Biological Process : DNA replication
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 18, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000631683 (
ENST00000532584
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,865,006 - 89,868,831 (3,826)
query : 1 - 708 (708/708)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000625528 (
ENST00000526314
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,865,973 - 89,869,922 (3,950)
query : 1 - 686 (686/686)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, extr 8, cyto 7.5, cyto_nucl 7, nucl 5.5,
E.R._mito 5.5, mito_pero 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000625609 (
ENST00000526398
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,866,036 - 89,868,818 (2,783)
query : 1 - 512 (512/512)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 13, extr 10, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000625783 (
ENST00000526573
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,866,745 - 89,868,715 (1,971)
query : 1 - 544 (544/544)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000632930 (
ENST00000533857
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,866,751 - 89,867,522 (772)
query : 1 - 567 (567/567)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, cyto_nucl 4.33333, cyto 4, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000631467 (
ENST00000532363
)
(DNA polymerase subunit gamma-1; EC=2.7.7.7; Mitochondrial DNA polymerase catalytic subunit; PolG-alpha;)
genome : 89,870,244 - 89,871,770 (1,527)
query : 11 - 431 (421/431)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.977
EC number :
EC 2.7.7.7
KEGG pathway :
00230 : Purine metabolism (100)
00240 : Pyrimidine metabolism (63)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0026803
HIT000625030 (
ENST00000525806
)
(Non-protein coding transcript.)
genome : 89,875,560 - 89,876,475 (916)
query : 1 - 195 (195/195)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026803)
HIX0038330
HIT000092480
(
BC031940
)
Representative transcript
(Hypothetical short protein.)
genome : 89,878,284 - 89,879,392 (1,109)
query : 1 - 1,109 (1,109/1,123)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 17, cyto 9, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038330)
HIX0038330
HIT000682415 (
ENST00000569473
)
(Hypothetical short protein.)
genome : 89,878,284 - 89,879,392 (1,109)
query : 1 - 1,109 (1,109/1,109)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 17, cyto 9, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038330)
HIX0038330
HIT000675559 (
ENST00000562356
)
(Hypothetical short protein.)
genome : 89,878,502 - 89,879,392 (891)
query : 1 - 612 (612/612)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038330)
HIX0012563
HIT000635825 (
ENST00000536780
)
(Hypothetical protein.)
genome : 89,904,810 - 89,938,551 (33,742)
query : 1 - 1,611 (1,611/1,611)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000673259 (
ENST00000560008
)
(Non-protein coding transcript.)
genome : 89,905,705 - 89,922,463 (16,759)
query : 1 - 571 (571/571)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000674553 (
ENST00000561327
)
(Hypothetical short protein.)
genome : 89,905,718 - 89,938,562 (32,845)
query : 1 - 957 (957/957)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000471003 (
ENST00000385084
)
(Non-protein coding transcript.)
genome : 89,911,248 - 89,911,337 (90)
query : 1 - 90 (90/90)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000658070 (
NR_029692
)
(Non-protein coding transcript.)
genome : 89,911,248 - 89,911,337 (90)
query : 1 - 90 (90/90)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000011545
(
AK054931
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,911,330 - 89,941,718 (30,389)
query : 1 - 2,124 (2,124/2,124)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000673902 (
ENST00000560663
)
(Hypothetical short protein.)
genome : 89,912,386 - 89,931,074 (18,689)
query : 1 - 576 (576/576)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, extr 8, cyto_nucl 6.83333, nucl 5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000562171 (
NR_015411
)
(Conserved hypothetical protein.)
genome : 89,921,273 - 89,941,718 (20,446)
query : 1 - 4,198 (4,198/4,216)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 5.5, cyto_nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000673836 (
ENST00000560596
)
(Hypothetical short protein.)
genome : 89,921,280 - 89,938,544 (17,265)
query : 1 - 606 (606/606)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000671967 (
ENST00000558692
)
(Hypothetical short protein.)
genome : 89,921,331 - 89,938,354 (17,024)
query : 1 - 551 (551/551)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000045165
(
AK125292
)
(Conserved hypothetical protein.)
genome : 89,921,347 - 89,939,697 (18,351)
query : 1 - 2,103 (2,103/2,103)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, nucl 8, cyto_nucl 8, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000637779 (
ENST00000538734
)
(Hypothetical short protein.)
genome : 89,921,347 - 89,939,471 (18,125)
query : 1 - 1,877 (1,877/1,877)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000672505 (
ENST00000559235
)
(Hypothetical short protein.)
genome : 89,921,362 - 89,938,500 (17,139)
query : 1 - 561 (561/561)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000672028 (
ENST00000558754
)
(Hypothetical protein.)
genome : 89,921,794 - 89,931,112 (9,319)
query : 1 - 772 (772/786)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.982
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000672254 (
ENST00000558982
)
(Hypothetical short protein.)
genome : 89,922,355 - 89,938,350 (15,996)
query : 1 - 569 (569/569)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000674267 (
ENST00000561037
)
(Hypothetical short protein.)
genome : 89,925,731 - 89,932,713 (6,983)
query : 1 - 766 (766/779)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.983
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000043665
(
AK123792
)
(Conserved hypothetical protein.)
genome : 89,929,827 - 89,939,697 (9,871)
query : 1 - 2,944 (2,944/2,944)
4 exons
identity = 0.999
5'(0.999;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, nucl 8, cyto_nucl 8, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000645231 (
ENST00000546186
)
(Hypothetical protein.)
genome : 89,929,827 - 89,939,471 (9,645)
query : 1 - 2,718 (2,718/2,718)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0026830
HIT000044764
(
AK124891
)
Representative transcript
(Conserved hypothetical protein.)
genome : 89,935,896 - 89,937,067 (1,172)
query : 1 - 1,172 (1,172/1,173)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10.6667, cyto 8, nucl 7,
cyto_pero 6, mito_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026830)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000007986
Pan
sp. (Chimpanzee) : ENSPTRT00000058309
HIX0012563
HIT000021214
(
AK096359
)
(Conserved hypothetical protein.)
genome : 89,939,405 - 89,941,719 (2,315)
query : 1 - 2,314 (2,314/2,314)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 5.5, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0038243
HIT000011324
(
AK054710
)
Representative transcript
(Hypothetical protein.)
genome : 89,939,904 - 89,941,719 (1,816)
query : 1 - 1,815 (1,815/1,815)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 7, cyto 4, mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038243)
HIX0012563
HIT000092999
(
BC033240
)
(Hypothetical short protein.)
genome : 89,940,360 - 89,941,718 (1,359)
query : 1 - 1,359 (1,359/1,377)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 5.5, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012563
HIT000461897
(
DQ595366
)
(Non-protein coding transcript.)
genome : 89,941,177 - 89,941,205 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012563)
HIX0012565
HIT000496264
(
AK301640
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 89,998,680 - 90,039,814 (41,135)
query : 1 - 1,748 (1,748/1,748)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000643645 (
ENST00000544600
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 89,998,680 - 90,039,814 (41,135)
query : 1 - 1,748 (1,748/1,748)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000041179
(
BC030965
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,642 - 90,039,814 (25,173)
query : 1 - 1,948 (1,948/1,979)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.993;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000073332
(
AF193809
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,641 - 90,039,799 (25,159)
query : 1 - 1,934 (1,934/1,952)
11 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000206048 (
NM_016321
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,641 - 90,039,799 (25,159)
query : 1 - 1,934 (1,934/1,952)
11 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000088701
(
BC015461
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,641 - 90,039,802 (25,162)
query : 1 - 1,850 (1,850/1,864)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000673331 (
ENST00000560081
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,629 - 90,039,802 (25,174)
query : 1 - 1,862 (1,862/1,862)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000110257 (
ENST00000268122
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,638 - 90,039,844 (25,207)
query : 1 - 1,982 (1,982/1,982)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000066479
(
AF081497
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,643 - 90,039,814 (25,172)
query : 2 - 1,948 (1,947/1,949)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000423696
(
AK290899
)
Representative transcript
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,642 - 90,039,815 (25,174)
query : 1 - 1,949 (1,949/1,949)
11 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.995;1.000)5'
coverage = 1.000
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
Ortholog candidate ( ->
Evola
)
Oryzias
sp. (Medaka) : AB036511
Takifugu
sp. (Fugu) : AB218980
Danio
sp. (Zebrafish) : AF398238
Mus
sp. (Mouse) : AK076757
Rattus
sp. (Rat) : AY129073
Gallus
sp. (Chicken) : AY227357
Pan
sp. (Chimpanzee) : AY831675
Canis
sp. (Dog) : AY831678
Tetraodon
sp. (Tetraodon) : AY865615
Bos
sp. (Cow) : BC111288
Danio
sp. (Zebrafish) : BC139524
Pongo
sp. (Orangutan) : CR926482
Macaca
sp. (Macaque) : ENSMMUT00000031911
Monodelphis
sp. (Opossum) : ENSMODT00000024824
Equus
sp. (Horse) : XM_001499423
HIX0012565
HIT000671640 (
ENST00000558360
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,676 - 90,022,661 (7,986)
query : 1 - 1,014 (1,014/1,014)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000492876
(
AK298252
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,832 - 90,039,813 (24,982)
query : 1 - 1,730 (1,730/1,730)
11 exons
identity = 0.982
3'(0.988;1.000;1.000;1.000;0.993;1.000;1.000;
1.000;1.000;1.000;0.878)5'
coverage = 1.000
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000251263
(
AY257182
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,985 - 90,039,778 (24,794)
query : 1 - 1,569 (1,569/1,569)
11 exons
identity = 0.999
3'(1.000;0.993;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000493265
(
AK298641
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,988 - 90,039,813 (24,826)
query : 1 - 1,406 (1,406/1,406)
10 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.988;
0.990;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000671320 (
ENST00000558030
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,014,988 - 90,039,813 (24,826)
query : 1 - 1,405 (1,405/1,405)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14, extr 14, extr_plas 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000432104
(
AK313238
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,015,966 - 90,039,814 (23,849)
query : 1 - 1,479 (1,479/1,479)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000671471 (
ENST00000558184
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,020,959 - 90,039,820 (18,862)
query : 1 - 1,388 (1,388/1,388)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, plas 9, E.R. 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000429088
(
AK310222
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,020,959 - 90,039,816 (18,858)
query : 4 - 1,387 (1,384/1,387)
7 exons
identity = 0.998
3'(1.000;1.000;0.986;1.000;0.996;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR002229 : Blood group Rhesus C/E/D polypeptide
IPR024041 : Ammonium transporter AmtB-like domain
IPR029020 : Ammonium/urea transporter
GO :
0008519 : Molecular Function : ammonium transmembrane transporter activity
0015696 : Biological Process : ammonium transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, plas 9, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012565
HIT000672898 (
ENST00000559638
)
(Ammonium transporter Rh type C; Rh glycoprotein kidney; Rhesus blood group family type C glycoprotein; Rh family type C glycoprotein; Rh type C glycoprotein; Tumor-related protein DRC2;)
genome : 90,021,030 - 90,022,967 (1,938)
query : 1 - 591 (591/591)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012565)
HIX0012566
HIT000095619
(
BC039350
)
(Hypothetical protein.)
genome : 90,048,161 - 90,067,265 (19,105)
query : 1 - 2,353 (2,353/2,367)
3 exons
identity = 0.998
3'(0.998;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 8.16667, cyto 6, cyto_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000563236 (
NR_027074
)
(Conserved hypothetical protein.)
genome : 90,048,161 - 90,067,265 (19,105)
query : 1 - 2,352 (2,352/2,366)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 8.16667, cyto 6, cyto_pero 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000563237 (
NR_027075
)
(Conserved hypothetical protein.)
genome : 90,048,161 - 90,067,265 (19,105)
query : 1 - 1,470 (1,470/1,484)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000563238 (
NR_027076
)
(Conserved hypothetical protein.)
genome : 90,048,161 - 90,067,265 (19,105)
query : 1 - 1,183 (1,183/1,197)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000563239 (
NR_027077
)
(Conserved hypothetical protein.)
genome : 90,048,161 - 90,067,265 (19,105)
query : 1 - 1,354 (1,354/1,368)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000674428 (
ENST00000561201
)
(Hypothetical short protein.)
genome : 90,048,508 - 90,067,265 (18,758)
query : 1 - 1,123 (1,123/1,123)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, extr 11, nucl 11, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000337233
(
BC102002
)
(Conserved hypothetical protein.)
genome : 90,048,508 - 90,066,984 (18,477)
query : 1 - 806 (806/806)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 12, cyto_nucl 11, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000337234
(
BC102003
)
Representative transcript
(Conserved hypothetical protein.)
genome : 90,048,508 - 90,066,984 (18,477)
query : 1 - 842 (842/842)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 12, cyto_nucl 11, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000337235
(
BC102004
)
(Conserved hypothetical protein.)
genome : 90,048,508 - 90,066,984 (18,477)
query : 1 - 555 (555/555)
3 exons
identity = 0.998
3'(0.997;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000337236
(
BC102005
)
(Conserved hypothetical protein.)
genome : 90,048,508 - 90,066,984 (18,477)
query : 1 - 807 (807/807)
3 exons
identity = 0.999
3'(0.998;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 14.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000674338 (
ENST00000561108
)
(Hypothetical short protein.)
genome : 90,048,508 - 90,066,984 (18,477)
query : 1 - 806 (806/806)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 12, cyto_nucl 11, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000340623
(
BC113965
)
(Conserved hypothetical protein.)
genome : 90,048,509 - 90,066,984 (18,476)
query : 1 - 725 (725/725)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 8, nucl 3.5, cyto_nucl 3.33333, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000673219 (
ENST00000559967
)
(Hypothetical short protein.)
genome : 90,048,509 - 90,066,984 (18,476)
query : 1 - 725 (725/725)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 8, nucl 3.5, cyto_nucl 3.33333, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0038110
HIT000250186
(
AL109703
)
Representative transcript
(Conserved hypothetical protein.)
genome : 90,052,092 - 90,053,646 (1,555)
query : 3 - 1,540 (1,538/1,558)
1 exon
identity = 0.974
5'(0.974)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, mito 4, cyto 3.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038110)
HIX0012566
HIT000680492 (
ENST00000567484
)
(Conserved hypothetical protein.)
genome : 90,052,192 - 90,053,647 (1,456)
query : 1 - 1,456 (1,456/1,456)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0038110
HIT000250187
(
AL109704
)
(Conserved hypothetical protein.)
genome : 90,053,134 - 90,053,646 (513)
query : 1 - 513 (513/530)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, mito 13, nucl 3, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038110)
HIX0012566
HIT000014716
(
AK058110
)
(Conserved hypothetical protein.)
genome : 90,057,819 - 90,067,247 (9,429)
query : 1 - 836 (836/836)
3 exons
identity = 0.996
3'(0.996;0.994;0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, extr 11, nucl 11, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012566
HIT000672497 (
ENST00000559227
)
(Hypothetical short protein.)
genome : 90,057,819 - 90,067,247 (9,429)
query : 1 - 836 (836/836)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, extr 11, nucl 11, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012566)
HIX0012549
HIT000477889 (
ENST00000394480
)
(NT-3 growth factor receptor; EC=2.7.10.1; GP145-TrkC; Trk-C; Neurotrophic tyrosine kinase receptor type 3; TrkC tyrosine kinase; Precursor;)
genome : 88,402,982 - 88,799,978 (396,997)
query : 1 - 19,984 (19,984/19,984)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000216669
(
S76475
)
(NT-3 growth factor receptor; EC=2.7.10.1; GP145-TrkC; Trk-C; Neurotrophic tyrosine kinase receptor type 3; TrkC tyrosine kinase; Precursor;)
genome : 88,419,988 - 88,799,394 (379,407)
query : 7 - 2,713 (2,707/2,715)
18 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
0.994;1.000;1.000;1.000;0.992)5'
coverage = 0.997
EC number :
EC 2.7.10.1
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR001611 : Leucine-rich repeat
IPR002011 : Tyrosine-protein kinase, receptor class II, conserved site
IPR008266 : Tyrosine-protein kinase, active site
IPR013098 : Immunoglobulin I-set
IPR020446 : Tyrosine-protein kinase, neurotrophic receptor, type 3
IPR020635 : Tyrosine-protein kinase, catalytic domain
IPR020777 : Tyrosine-protein kinase, neurotrophic receptor
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005030 : Molecular Function : neurotrophin receptor activity
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005887 : Cellular Component : integral component of plasma membrane
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000199423 (
NM_002530
)
(NT-3 growth factor receptor; EC=2.7.10.1; GP145-TrkC; Trk-C; Neurotrophic tyrosine kinase receptor type 3; TrkC tyrosine kinase; Precursor;)
genome : 88,419,988 - 88,799,962 (379,975)
query : 1 - 2,962 (2,962/2,962)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000316871 (
NM_001012338
)
(NT-3 growth factor receptor; EC=2.7.10.1; GP145-TrkC; Trk-C; Neurotrophic tyrosine kinase receptor type 3; TrkC tyrosine kinase; Precursor;)
genome : 88,419,988 - 88,799,962 (379,975)
query : 1 - 3,004 (3,004/3,004)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000722830 (
NM_001243101
)
(NT-3 growth factor receptor isoform d precursor.)
genome : 88,419,988 - 88,799,962 (379,975)
query : 1 - 2,938 (2,938/2,938)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000064379
(
AF052184
)
(NT-3 growth factor receptor; EC=2.7.10.1; Neurotrophic tyrosine kinase receptor type 3; Precursor;)
genome : 88,420,021 - 88,670,453 (250,433)
query : 1 - 1,391 (1,391/1,408)
8 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR002011 : Tyrosine-protein kinase, receptor class II, conserved site
IPR008266 : Tyrosine-protein kinase, active site
IPR020635 : Tyrosine-protein kinase, catalytic domain
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005524 : Molecular Function : ATP binding
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000491784
(
AK297160
)
(NT-3 growth factor receptor isoform d precursor.)
genome : 88,420,014 - 88,799,408 (379,395)
query : 1 - 2,630 (2,630/2,630)
16 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.993;1.000;
0.986;1.000;1.000;0.996)5'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR001611 : Leucine-rich repeat
IPR002011 : Tyrosine-protein kinase, receptor class II, conserved site
IPR008266 : Tyrosine-protein kinase, active site
IPR013098 : Immunoglobulin I-set
IPR020446 : Tyrosine-protein kinase, neurotrophic receptor, type 3
IPR020635 : Tyrosine-protein kinase, catalytic domain
IPR020777 : Tyrosine-protein kinase, neurotrophic receptor
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005030 : Molecular Function : neurotrophin receptor activity
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005887 : Cellular Component : integral component of plasma membrane
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 6.5, cyto_pero 6, extr 5.5, extr_plas 5,
cyto 4.5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000309422 (
ENST00000355254
)
(NT-3 growth factor receptor; EC=2.7.10.1; GP145-TrkC; Trk-C; Neurotrophic tyrosine kinase receptor type 3; TrkC tyrosine kinase; Precursor;)
genome : 88,420,022 - 88,799,661 (379,640)
query : 1 - 2,784 (2,784/2,784)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000311537 (
ENST00000357724
)
(NT-3 growth factor receptor; EC=2.7.10.1; GP145-TrkC; Trk-C; Neurotrophic tyrosine kinase receptor type 3; TrkC tyrosine kinase; Precursor;)
genome : 88,420,022 - 88,799,661 (379,640)
query : 1 - 2,802 (2,802/2,802)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000314246 (
ENST00000360948
)
(NT-3 growth factor receptor; EC=2.7.10.1; GP145-TrkC; Trk-C; Neurotrophic tyrosine kinase receptor type 3; TrkC tyrosine kinase; Precursor;)
genome : 88,420,022 - 88,799,661 (379,640)
query : 1 - 2,826 (2,826/2,826)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000671146 (
ENST00000557856
)
(NT-3 growth factor receptor isoform d precursor.)
genome : 88,420,022 - 88,799,408 (379,387)
query : 1 - 2,622 (2,622/2,622)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000217577
(
U05012
)
(NT-3 growth factor receptor; EC=2.7.10.1; GP145-TrkC; Trk-C; Neurotrophic tyrosine kinase receptor type 3; TrkC tyrosine kinase; Precursor;)
genome : 88,420,049 - 88,799,655 (379,607)
query : 5 - 2,750 (2,746/2,750)
18 exons
identity = 0.995
3'(0.995;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000;1.000;1.000;0.936)5'
coverage = 0.999
EC number :
EC 2.7.10.1
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR001611 : Leucine-rich repeat
IPR002011 : Tyrosine-protein kinase, receptor class II, conserved site
IPR008266 : Tyrosine-protein kinase, active site
IPR013098 : Immunoglobulin I-set
IPR020446 : Tyrosine-protein kinase, neurotrophic receptor, type 3
IPR020635 : Tyrosine-protein kinase, catalytic domain
IPR020777 : Tyrosine-protein kinase, neurotrophic receptor
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005030 : Molecular Function : neurotrophin receptor activity
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005887 : Cellular Component : integral component of plasma membrane
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000432512
(
AK313646
)
Representative transcript
(NT-3 growth factor receptor isoform d precursor.)
genome : 88,420,166 - 88,799,409 (379,244)
query : 1 - 2,479 (2,479/2,479)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR001611 : Leucine-rich repeat
IPR002011 : Tyrosine-protein kinase, receptor class II, conserved site
IPR008266 : Tyrosine-protein kinase, active site
IPR013098 : Immunoglobulin I-set
IPR020446 : Tyrosine-protein kinase, neurotrophic receptor, type 3
IPR020635 : Tyrosine-protein kinase, catalytic domain
IPR020777 : Tyrosine-protein kinase, neurotrophic receptor
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005030 : Molecular Function : neurotrophin receptor activity
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005887 : Cellular Component : integral component of plasma membrane
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_pero 6, extr 5.5, cyto 5.5, pero 5.5,
extr_plas 5, E.R._mito 4.5, mito 4, plas 3.5, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000497128
(
AK302504
)
(NT-3 growth factor receptor isoform b precursor.)
genome : 88,459,504 - 88,749,164 (289,661)
query : 1 - 2,286 (2,286/2,286)
16 exons
identity = 0.999
3'(0.995;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR001611 : Leucine-rich repeat
IPR002011 : Tyrosine-protein kinase, receptor class II, conserved site
IPR008266 : Tyrosine-protein kinase, active site
IPR013098 : Immunoglobulin I-set
IPR020446 : Tyrosine-protein kinase, neurotrophic receptor, type 3
IPR020777 : Tyrosine-protein kinase, neurotrophic receptor
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005030 : Molecular Function : neurotrophin receptor activity
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005887 : Cellular Component : integral component of plasma membrane
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, plas 6, nucl 4, cyto_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000641778 (
ENST00000542733
)
(NT-3 growth factor receptor isoform b precursor.)
genome : 88,459,504 - 88,749,164 (289,661)
query : 1 - 2,287 (2,287/2,287)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, plas 6, nucl 4, cyto_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000428561
(
AK309695
)
(NT-3 growth factor receptor isoform d precursor.)
genome : 88,472,233 - 88,799,410 (327,178)
query : 1 - 2,324 (2,324/2,324)
14 exons
identity = 0.999
3'(1.000;0.990;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR001611 : Leucine-rich repeat
IPR002011 : Tyrosine-protein kinase, receptor class II, conserved site
IPR008266 : Tyrosine-protein kinase, active site
IPR013098 : Immunoglobulin I-set
IPR020446 : Tyrosine-protein kinase, neurotrophic receptor, type 3
IPR020777 : Tyrosine-protein kinase, neurotrophic receptor
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005030 : Molecular Function : neurotrophin receptor activity
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005887 : Cellular Component : integral component of plasma membrane
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 7, cyto_pero 6.83333, extr 6.5, mito_pero 6.5,
cyto 5.5, extr_plas 5.5, mito 4.5, E.R._mito 4.33333, plas 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000671951 (
ENST00000558676
)
(NT-3 growth factor receptor isoform d precursor.)
genome : 88,472,233 - 88,799,410 (327,178)
query : 1 - 2,324 (2,324/2,324)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 7, cyto_pero 6.83333, extr 6.5, mito_pero 6.5,
cyto 5.5, extr_plas 5.5, mito 4.5, E.R._mito 4.33333, plas 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000316382 (
NM_001007156
)
(NT-3 growth factor receptor isoform c precursor.)
genome : 88,520,597 - 88,799,962 (279,366)
query : 1 - 4,124 (4,124/4,141)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, extr_plas 7.5, plas 6.5, cyto 5.5,
cyto_pero 5, E.R._mito 4.5, mito 3.5, pero 3.5, E.R. 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000121316 (
ENST00000317501
)
(NT-3 growth factor receptor; EC=2.7.10.1; GP145-TrkC; Trk-C; Neurotrophic tyrosine kinase receptor type 3; TrkC tyrosine kinase; Precursor;)
genome : 88,520,598 - 88,799,661 (279,064)
query : 1 - 3,979 (3,979/3,979)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, extr_plas 7.5, plas 6.5, cyto 5.5,
cyto_pero 5, E.R._mito 4.5, mito 3.5, pero 3.5, E.R. 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000216670
(
S76476
)
(NT-3 growth factor receptor isoform c precursor.)
genome : 88,522,209 - 88,799,394 (277,186)
query : 7 - 2,221 (2,215/2,225)
14 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993;0.994;1.000;1.000;1.000;0.992)5'
coverage = 0.996
EC number :
EC 2.7.10.1
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR013098 : Immunoglobulin I-set
IPR020446 : Tyrosine-protein kinase, neurotrophic receptor, type 3
IPR020777 : Tyrosine-protein kinase, neurotrophic receptor
GO :
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005030 : Molecular Function : neurotrophin receptor activity
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005887 : Cellular Component : integral component of plasma membrane
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, extr_plas 7.5, plas 6.5, cyto 5.5,
cyto_pero 5, E.R._mito 4.5, mito 3.5, pero 3.5, E.R. 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000036328
(
BC013693
)
(NT-3 growth factor receptor; EC=2.7.10.1; GP145-TrkC; Trk-C; Neurotrophic tyrosine kinase receptor type 3; TrkC tyrosine kinase; Precursor;)
genome : 88,522,289 - 88,799,389 (277,101)
query : 1 - 2,131 (2,131/2,146)
14 exons
identity = 0.999
3'(1.000;1.000;0.995;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR013098 : Immunoglobulin I-set
IPR020446 : Tyrosine-protein kinase, neurotrophic receptor, type 3
IPR020777 : Tyrosine-protein kinase, neurotrophic receptor
GO :
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005030 : Molecular Function : neurotrophin receptor activity
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005887 : Cellular Component : integral component of plasma membrane
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, extr_plas 7.5, plas 6.5, cyto 5.5,
cyto_pero 5, E.R._mito 4.5, mito 3.5, pero 3.5, E.R. 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB220464
Mus
sp. (Mouse) : AY336094
Pan
sp. (Chimpanzee) : AY665291
Monodelphis
sp. (Opossum) : ENSMODT00000036755
Oryzias
sp. (Medaka) : ENSORLT00000018308
Pongo
sp. (Orangutan) : ENSPPYT00000007969
Tetraodon
sp. (Tetraodon) : GSTENT00022390001
Rattus
sp. (Rat) : S60953
Takifugu
sp. (Fugu) : SINFRUT00000128161
Equus
sp. (Horse) : XM_001499573
Danio
sp. (Zebrafish) : XM_692013
Canis
sp. (Dog) : XM_846291
Gallus
sp. (Chicken) : Z30091
HIX0012549
HIT000639534 (
ENST00000540489
)
(NT-3 growth factor receptor isoform c precursor.)
genome : 88,522,298 - 88,799,390 (277,093)
query : 1 - 2,123 (2,123/2,123)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, extr_plas 7.5, plas 6.5, cyto 5.5,
cyto_pero 5, E.R._mito 4.5, mito 3.5, pero 3.5, E.R. 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000100211
(
BT007291
)
(NT-3 growth factor receptor isoform c precursor.)
genome : 88,522,577 - 88,799,384 (276,808)
query : 1 - 1,838 (1,838/1,839)
14 exons
identity = 0.999
3'(1.000;1.000;0.995;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
EC number :
EC 2.7.10.1
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR013098 : Immunoglobulin I-set
IPR020446 : Tyrosine-protein kinase, neurotrophic receptor, type 3
IPR020777 : Tyrosine-protein kinase, neurotrophic receptor
GO :
0004714 : Molecular Function : transmembrane receptor protein tyrosine kinase activity
0005030 : Molecular Function : neurotrophin receptor activity
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005887 : Cellular Component : integral component of plasma membrane
0006468 : Biological Process : protein phosphorylation
0007169 : Biological Process : transmembrane receptor protein tyrosine kinase signaling pathway
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 7.5, extr_plas 7.5, plas 6.5, cyto 5.5,
cyto_pero 5, E.R._mito 4.5, mito 3.5, pero 3.5, E.R. 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000673268 (
ENST00000560017
)
(NT-3 growth factor receptor isoform d precursor.)
genome : 88,615,782 - 88,679,169 (63,388)
query : 1 - 257 (257/257)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, extr 5, pero 4, extr_plas 4, plas 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
HIX0012549
HIT000064800
(
AF058389
)
(NT-3 growth factor receptor isoform d precursor.)
genome : 88,670,420 - 88,678,494 (8,075)
query : 1 - 201 (201/201)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 10, cyto_nucl 9, nucl 6, extr_plas 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012549)
AC021677.4
88500001-88671165 F +
NCBI
AC009711.10
88671166-88838784 F -
NCBI
AC087593.6
88838785-88953472 F +
NCBI
AC142404.2
88953473-88977691 F -
NCBI
AC142401.2
88977692-89014984 F +
NCBI
AC013489.17
89014985-89176892 F -
NCBI
AC104259.14
89176893-89252394 F -
NCBI
AC103982.10
89252395-89429127 F +
NCBI
AC067805.9
89429128-89519235 F +
NCBI
AC107954.5
89519236-89548769 F +
NCBI
AC013565.10
89548770-89726177 F +
NCBI
AC124068.6
89726178-89882157 F +
NCBI
AC133637.2
89882158-89939471 F -
NCBI
AC013391.12
89939472-90100000 F -
NCBI