bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0011157
HIT000200783 (
NM_004004
)
(Gap junction beta-2 protein.)
genome : 20,761,605 - 20,767,114 (5,510)
query : 1 - 2,331 (2,331/2,347)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002268 : Gap junction beta-2 protein (Cx26)
IPR013092 : Connexin, N-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011157)
HIX0011157
HIT000037806
(
BC017048
)
Representative transcript
(Gap junction beta-2 protein.)
genome : 20,761,610 - 20,767,037 (5,428)
query : 1 - 2,249 (2,249/2,263)
2 exons
identity = 0.998
3'(0.998;1.000)5'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002268 : Gap junction beta-2 protein (Cx26)
IPR013092 : Connexin, N-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011157)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AF072699
Mus
sp. (Mouse) : AK146485
Rattus
sp. (Rat) : BC078952
Danio
sp. (Zebrafish) : BC095350
Bos
sp. (Cow) : BC133597
Macaca
sp. (Macaque) : ENSMMUT00000014720
Oryzias
sp. (Medaka) : ENSORLT00000011897
Pongo
sp. (Orangutan) : ENSPPYT00000006145
Tetraodon
sp. (Tetraodon) : GSTENT00022232001
Takifugu
sp. (Fugu) : SINFRUT00000171234
Pan
sp. (Chimpanzee) : XM_001145895
Monodelphis
sp. (Opossum) : XM_001374895
Equus
sp. (Horse) : XM_001488573
HIX0011157
HIT000364126 (
ENST00000382848
)
(Gap junction beta-2 protein.)
genome : 20,761,606 - 20,767,114 (5,509)
query : 1 - 2,330 (2,330/2,330)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 11, mito_nucl 11, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011157)
HIX0011157
HIT000196649
(
M86849
)
(Gap junction beta-2 protein; Connexin-26; Cx26;)
genome : 20,761,611 - 20,763,919 (2,309)
query : 2 - 2,311 (2,310/2,311)
1 exon
identity = 0.989
3'(0.989)5'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002268 : Gap junction beta-2 protein (Cx26)
IPR013092 : Connexin, N-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011157)
HIX0011157
HIT000364122 (
ENST00000382844
)
(Gap junction beta-2 protein.)
genome : 20,761,611 - 20,763,919 (2,309)
query : 1 - 2,309 (2,309/2,309)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002268 : Gap junction beta-2 protein (Cx26)
IPR013092 : Connexin, N-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011157)
HIX0011157
HIT000264524
(
BC071703
)
(Gap junction beta-2 protein; Connexin-26; Cx26;)
genome : 20,761,934 - 20,767,043 (5,110)
query : 1 - 1,931 (1,931/1,959)
2 exons
identity = 0.998
3'(0.998;1.000)5'
coverage = 0.999
InterPro :
IPR000500 : Connexin
IPR002268 : Gap junction beta-2 protein (Cx26)
IPR013092 : Connexin, N-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011157)
HIX0011157
HIT000385096
(
AK225966
)
(Gap junction beta-2 protein; Connexin-26; Cx26;)
genome : 20,762,876 - 20,767,077 (4,202)
query : 1 - 1,023 (1,023/1,023)
2 exons
identity = 0.998
3'(0.998;1.000)5'
coverage = 1.000
InterPro :
IPR000500 : Connexin
IPR002268 : Gap junction beta-2 protein (Cx26)
IPR013092 : Connexin, N-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011157)
HIX0011157
HIT000432461
(
AK313595
)
(Gap junction beta-2 protein; Connexin-26; Cx26;)
genome : 20,763,040 - 20,767,103 (4,064)
query : 3 - 888 (886/888)
2 exons
identity = 0.998
3'(0.999;0.995)5'
coverage = 0.998
InterPro :
IPR000500 : Connexin
IPR002268 : Gap junction beta-2 protein (Cx26)
IPR013092 : Connexin, N-terminal
IPR017990 : Connexin, conserved site
IPR019570 : Gap junction protein, cysteine-rich domain
GO :
0005922 : Cellular Component : connexon complex
0007154 : Biological Process : cell communication
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011157)
HIX0011157
HIT000099652
(
BT006732
)
(Gap junction beta-2 protein.)
genome : 20,763,041 - 20,763,720 (680)
query : 1 - 680 (680/681)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011157)
HIX0037390
HIT000068330
(
AF091526
)
Representative transcript
(Hypothetical short protein.)
genome : 20,768,551 - 20,770,144 (1,594)
query : 1 - 1,593 (1,593/1,593)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037390)
AL138688.27
20756359-20772358 F +
NCBI
L3
Plat_L3
AluYc
AluSz
L1ME4a
L3
L2b
MIRc
MIRc
AluJb
AluJb
GC_rich
GC_rich
GC_rich
GC_rich
MamRep4096
AT_rich
(A)n
MER112