bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0011450
HIT000590254 (
ENST00000486502
)
(Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;)
genome : 108,903,588 - 108,922,765 (19,178)
query : 1 - 395 (395/395)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, extr 6, cyto 4, mito 4, cyto_mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000203164 (
NM_006573
)
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,921,977 - 108,960,832 (38,856)
query : 1 - 2,671 (2,671/2,675)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, plas 7, cyto_mito 7, extr_plas 6, extr 3,
nucl 3, golg 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000561438 (
NM_001145645
)
(Tumor necrosis factor ligand superfamily member 13B isoform 2.)
genome : 108,921,977 - 108,960,832 (38,856)
query : 1 - 2,614 (2,614/2,618)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13.5, cyto_mito 7.5, plas 6, extr_plas 5.5,
extr 3, nucl 3, golg 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000357167 (
ENST00000375887
)
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,921,977 - 108,959,365 (37,389)
query : 1 - 1,204 (1,204/1,204)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000528493 (
ENST00000430559
)
(Tumor necrosis factor ligand superfamily member 13B isoform 2.)
genome : 108,921,977 - 108,959,365 (37,389)
query : 1 - 1,147 (1,147/1,147)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13.5, cyto_mito 7.5, plas 6, extr_plas 5.5,
extr 3, nucl 3, golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000038888
(
BC020674
)
Representative transcript
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,922,066 - 108,959,357 (37,292)
query : 2 - 1,108 (1,107/1,136)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.995)3'
coverage = 0.999
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, plas 7, cyto_mito 7, extr_plas 6, extr 3,
nucl 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ721035
Mus
sp. (Mouse) : AK034121
Tetraodon
sp. (Tetraodon) : CR698229
Equus
sp. (Horse) : ENSECAT00000021044
Oryzias
sp. (Medaka) : ENSORLT00000022501
Pongo
sp. (Orangutan) : ENSPPYT00000006509
Bos
sp. (Cow) : EU213012
Canis
sp. (Dog) : FJ793193
Rattus
sp. (Rat) : XM_001067576
Macaca
sp. (Macaque) : XM_001082247
Pan
sp. (Chimpanzee) : XM_001135794
Monodelphis
sp. (Opossum) : XM_001375771
HIX0011450
HIT000252925
(
AY358881
)
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,922,075 - 108,959,365 (37,291)
query : 1 - 1,106 (1,106/1,121)
6 exons
identity = 0.999
5'(0.998;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, plas 7, cyto_mito 7, extr_plas 6, extr 3,
nucl 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000428495
(
AK309629
)
(Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;)
genome : 108,922,076 - 108,959,315 (37,240)
query : 1 - 924 (924/924)
7 exons
identity = 0.988
5'(1.000;0.905;1.000;1.000;0.982;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000072905
(
AF186114
)
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,922,087 - 108,959,365 (37,279)
query : 1 - 1,094 (1,094/1,094)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, plas 7, cyto_mito 7, extr_plas 6, extr 3,
nucl 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000071016
(
AF134715
)
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,922,100 - 108,959,365 (37,266)
query : 1 - 1,081 (1,081/1,101)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, plas 7, cyto_mito 7, extr_plas 6, extr 3,
nucl 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000070897
(
AF132600
)
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,922,108 - 108,959,365 (37,258)
query : 1 - 1,073 (1,073/1,090)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, plas 7, cyto_mito 7, extr_plas 6, extr 3,
nucl 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000069926
(
AF116456
)
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,922,127 - 108,959,362 (37,236)
query : 2 - 1,052 (1,051/1,052)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, plas 7, cyto_mito 7, extr_plas 6, extr 3,
nucl 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000071074
(
AF136293
)
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,922,244 - 108,959,286 (37,043)
query : 1 - 858 (858/858)
6 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, plas 7, cyto_mito 7, extr_plas 6, extr 3,
nucl 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000084618
(
AY129225
)
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,922,244 - 108,959,286 (37,043)
query : 1 - 858 (858/858)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, plas 7, cyto_mito 7, extr_plas 6, extr 3,
nucl 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000251540
(
AY302751
)
(Tumor necrosis factor ligand superfamily member 13B isoform 2.)
genome : 108,922,244 - 108,959,286 (37,043)
query : 1 - 801 (801/801)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13.5, cyto_mito 7.5, plas 6, extr_plas 5.5,
extr 3, nucl 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000268689
(
CR541818
)
(Tumor necrosis factor ligand superfamily member 13B isoform 1.)
genome : 108,922,244 - 108,959,286 (37,043)
query : 1 - 858 (858/858)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, plas 7, cyto_mito 7, extr_plas 6, extr 3,
nucl 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000641181 (
ENST00000542136
)
(Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;)
genome : 108,922,244 - 108,939,209 (16,966)
query : 1 - 483 (483/495)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.976
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9.5, plas 8, extr_plas 7.5, cyto_mito 6.5,
extr 5, nucl 4, mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000650062
(
HM636064
)
(Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;)
genome : 108,922,244 - 108,939,209 (16,966)
query : 1 - 483 (483/495)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.976
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9.5, plas 8, extr_plas 7.5, cyto_mito 6.5,
extr 5, nucl 4, mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000084619
(
AY129226
)
(Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;)
genome : 108,922,475 - 108,959,286 (36,812)
query : 1 - 627 (627/627)
6 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.991)3'
coverage = 1.000
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 16.5, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000583501 (
ENST00000479435
)
(Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;)
genome : 108,922,575 - 108,955,952 (33,378)
query : 1 - 637 (637/637)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 8, cyto_nucl 6, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000084620
(
AY129227
)
(Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;)
genome : 108,922,688 - 108,959,286 (36,599)
query : 7 - 525 (519/525)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.991)3'
coverage = 0.989
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 7, nucl 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0011450
HIT000084621
(
AY129228
)
(Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;)
genome : 108,922,730 - 108,959,286 (36,557)
query : 1 - 477 (477/477)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.991)3'
coverage = 1.000
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 16.5, nucl 8, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
HIX0171937
HIT000509188 (
ENST00000411245
)
Representative transcript
(Non-protein coding transcript.)
genome : 108,953,560 - 108,953,679 (120)
query : 1 - 120 (120/120)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171937)
HIX0011450
HIT000597192 (
ENST00000493765
)
(Similar to Tumor necrosis factor ligand superfamily member 13B; B lymphocyte stimulator; BLyS; B-cell-activating factor; BAFF; Dendritic cell-derived TNF-like molecule; TNF- and APOL-related leukocyte expressed ligand 1; TALL-1; AltName: CD_antigen=CD257; Contains: Tumor necrosis factor ligand superfamily member 13b, membrane form; Contains: Tumor necrosis factor ligand superfamily member 13b, soluble form;)
genome : 108,955,654 - 108,959,365 (3,712)
query : 1 - 491 (491/507)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006052 : Tumour necrosis factor
IPR008983 : Tumour necrosis factor-like
GO :
0005164 : Molecular Function : tumor necrosis factor receptor binding
0005515 : Molecular Function : protein binding
0006955 : Biological Process : immune response
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 16, nucl 6.5, extr 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011450)
AL157762.13
108892210-108972209 F +
NCBI