bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0219943
HIT000492650
(
AK298026
)
Representative transcript
(Protein LMBR1L.)
genome : 49,496,136 - 49,504,633 (8,498)
query : 1 - 1,082 (1,082/1,082)
9 exons
identity = 0.998
3'(1.000;0.997)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15.5, extr_plas 10.5, plas 4.5, cyto 4,
E.R._mito 3.33333, mito 3, E.R. 2.5, cyto_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000555098 (
ENST00000457164
)
(Conserved hypothetical protein.)
genome : 49,496,136 - 49,504,633 (8,498)
query : 1 - 1,081 (1,081/1,081)
9 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 6.5, cyto 6, extr_plas 6, plas 4.5, pero 4.5,
mito_pero 4.33333, nucl 4, E.R._mito 3.33333, mito 3, cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000661783 (
ENST00000547675
)
(LMBR1-like membrane protein domain containing protein.)
genome : 49,496,259 - 49,504,458 (8,200)
query : 1 - 581 (581/581)
6 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000664826 (
ENST00000551169
)
(Lipocalin-1 receptor family protein.)
genome : 49,496,864 - 49,500,794 (3,931)
query : 1 - 771 (771/771)
7 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000665676 (
ENST00000552153
)
(Conserved hypothetical protein.)
genome : 49,497,470 - 49,504,654 (7,185)
query : 1 - 549 (549/549)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000666599 (
ENST00000553204
)
(LMBR1-like membrane protein domain containing protein.)
genome : 49,497,484 - 49,504,476 (6,993)
query : 1 - 582 (582/582)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000663915 (
ENST00000550137
)
(LMBR1-like membrane protein domain containing protein.)
genome : 49,498,253 - 49,504,628 (6,376)
query : 1 - 529 (529/529)
3 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000665410 (
ENST00000551854
)
(Lipocalin-1 receptor family protein.)
genome : 49,498,257 - 49,503,988 (5,732)
query : 1 - 535 (535/535)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000663182 (
ENST00000549296
)
(Conserved hypothetical protein.)
genome : 49,498,282 - 49,504,633 (6,352)
query : 1 - 560 (560/560)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000665348 (
ENST00000551782
)
(Lipocalin-1 receptor family protein.)
genome : 49,498,286 - 49,504,669 (6,384)
query : 1 - 567 (567/567)
6 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 4, lyso 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000664520 (
ENST00000550815
)
(Conserved hypothetical protein.)
genome : 49,498,534 - 49,504,460 (5,927)
query : 1 - 541 (541/541)
5 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, nucl 5, plas 4, extr 4, extr_plas 4,
E.R._mito 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000429540
(
AK310674
)
(Protein LMBR1L.)
genome : 49,500,206 - 49,504,667 (4,462)
query : 1 - 965 (965/965)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 12, cyto 10, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000664780 (
ENST00000551115
)
(Conserved hypothetical protein.)
genome : 49,500,206 - 49,504,667 (4,462)
query : 1 - 965 (965/965)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 12, cyto 10, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000665135 (
ENST00000551535
)
(Conserved hypothetical protein.)
genome : 49,500,372 - 49,504,683 (4,312)
query : 1 - 874 (874/874)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 8, mito 6.5, cyto_nucl 6.5, E.R._mito 5.83333,
nucl 5, mito_pero 4.66667, plas 4, extr 4, extr_plas 4,
cyto_golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0219943
HIT000662910 (
ENST00000548983
)
(Conserved hypothetical protein.)
genome : 49,500,474 - 49,504,630 (4,157)
query : 1 - 522 (522/522)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 22, pero 4, plas 2.5, extr_plas 2.5, nucl 2,
cyto_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219943)
HIX0171594
HIT000129893_01 (
ENST00000336023
)
(Tubulin alpha-1B chain; Alpha-tubulin ubiquitous; Tubulin K-alpha-1; Tubulin alpha-ubiquitous chain;)
genome : 49,521,565 - 49,525,178 (3,614)
query : 1 - 1,627 (1,627/1,627)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171594)
HIX0037067
HIT000662187 (
ENST00000548149
)
(Conserved hypothetical protein.)
genome : 49,521,565 - 49,522,662 (1,098)
query : 1 - 675 (675/675)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037067)
HIX0171594
HIT000629977_02 (
ENST00000530835
)
(Tubulin alpha-1B chain.)
genome : 49,521,566 - 49,525,181 (3,616)
query : 1 - 1,613 (1,613/1,613)
4 exons
identity = 0.958
3'(0.956;0.993;0.951;0.941)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 26, nucl 3.5, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171594)
HIX0171594
HIT000666319 (
ENST00000552893
)
(Tubulin alpha-1B chain.)
genome : 49,521,569 - 49,522,491 (923)
query : 1 - 504 (504/504)
2 exons
identity = 0.984
3'(1.000;0.918)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, nucl 5, cyto_nucl 5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171594)
HIX0171594
HIT000327140
(
Z36832
)
(Tubulin alpha-1B chain.)
genome : 49,521,569 - 49,522,402 (834)
query : 5 - 835 (831/835)
1 exon
identity = 0.982
3'(0.982)5'
coverage = 0.995
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 11.5, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171594)
HIX0037067
HIT000661527 (
ENST00000547387
)
(Conserved hypothetical protein.)
genome : 49,521,794 - 49,525,145 (3,352)
query : 1 - 897 (897/897)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 9.5, cyto_nucl 7.5, extr 4, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037067)
HIX0171594
HIT000255209
(
AY533484
)
Representative transcript
(Tubulin alpha-1B chain.)
genome : 49,522,578 - 49,523,174 (597)
query : 6 - 297 (292/297)
2 exons
identity = 0.963
3'(0.938;0.987)5'
coverage = 0.983
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR017975 : Tubulin, conserved site
GO :
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0007017 : Biological Process : microtubule-based process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 14, nucl 11, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171594)
HIX0171594
HIT000664958 (
ENST00000551324
)
(Tubulin alpha-3C/D chain; Alpha-tubulin 2; Alpha-tubulin 3C/D; Tubulin alpha-2 chain;)
genome : 49,522,764 - 49,525,178 (2,415)
query : 1 - 840 (840/840)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cysk 7, cyto_nucl 6.5, nucl 5.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171594)
HIX0171594
HIT000216000
(
S62639
)
(Tubulin alpha-1B chain.)
genome : 49,523,038 - 49,523,483 (446)
query : 1 - 337 (337/337)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
GO :
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0007017 : Biological Process : microtubule-based process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, extr 7, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171594)
HIX0171594
HIT000663687 (
ENST00000549870
)
(Tubulin alpha-1B chain.)
genome : 49,523,051 - 49,523,896 (846)
query : 1 - 565 (565/565)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 11.5, extr 7, nucl 5.5, cysk 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171594)
HIX0171594
HIT000661606 (
ENST00000547476
)
(Tubulin alpha-1B chain.)
genome : 49,523,069 - 49,525,180 (2,112)
query : 1 - 584 (584/584)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, extr 13, cyto_nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171594)
HIX0171594
HIT000666401 (
ENST00000552984
)
(Tubulin alpha-1B chain.)
genome : 49,523,147 - 49,525,178 (2,032)
query : 1 - 574 (574/574)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 11.5, cyto_nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171594)
HIX0037067
HIT000094744
(
BC037205
)
Representative transcript
(Hypothetical short protein.)
genome : 49,524,690 - 49,527,282 (2,593)
query : 1 - 1,950 (1,950/1,965)
2 exons
identity = 0.994
5'(1.000;0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 10, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037067)
HIX0037067
HIT000661815 (
ENST00000547712
)
(Hypothetical short protein.)
genome : 49,524,954 - 49,541,652 (16,699)
query : 1 - 418 (418/418)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037067)
HIX0037067
HIT000665103 (
ENST00000551496
)
(Hypothetical short protein.)
genome : 49,525,493 - 49,541,648 (16,156)
query : 1 - 319 (319/319)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 10.5, mito 9, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037067)
HIX0010598
HIT000053531
(
BC050637
)
(Tubulin alpha-1A chain; Alpha-tubulin 3; Tubulin B-alpha-1; Tubulin alpha-3 chain;)
genome : 49,578,584 - 49,582,834 (4,251)
query : 13 - 1,649 (1,637/1,706)
4 exons
identity = 0.999
3'(0.999;0.993;1.000;1.000)5'
coverage = 0.993
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000202643 (
NM_006009
)
(Tubulin family protein.)
genome : 49,578,579 - 49,583,107 (4,529)
query : 1 - 1,915 (1,915/1,930)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000724671 (
NM_001270399
)
(Tubulin family protein.)
genome : 49,578,579 - 49,583,107 (4,529)
query : 1 - 2,475 (2,475/2,490)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000724672 (
NM_001270400
)
(Tubulin family protein.)
genome : 49,578,579 - 49,583,107 (4,529)
query : 1 - 2,003 (2,003/2,018)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, nucl 6, extr 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000259760
(
BC057823
)
(Tubulin alpha-1A chain; Alpha-tubulin 3; Tubulin B-alpha-1; Tubulin alpha-3 chain;)
genome : 49,578,579 - 49,582,861 (4,283)
query : 1 - 1,666 (1,666/1,681)
4 exons
identity = 0.997
3'(0.997;1.000;0.996;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000032854
(
BC006468
)
(Tubulin alpha-1A chain; Alpha-tubulin 3; Tubulin B-alpha-1; Tubulin alpha-3 chain;)
genome : 49,578,584 - 49,582,816 (4,233)
query : 1 - 1,619 (1,619/1,639)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000071172
(
AF141347
)
Representative transcript
(Tubulin alpha-1A chain; Alpha-tubulin 3; Tubulin B-alpha-1; Tubulin alpha-3 chain;)
genome : 49,578,584 - 49,582,841 (4,258)
query : 1 - 1,644 (1,644/1,657)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000115771 (
ENST00000301071
)
(Tubulin family protein.)
genome : 49,578,579 - 49,583,107 (4,529)
query : 1 - 1,915 (1,915/1,915)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000191353
(
K00557
)
(Tubulin family protein.)
genome : 49,578,579 - 49,580,140 (1,562)
query : 1 - 1,246 (1,246/1,246)
2 exons
identity = 0.991
3'(0.991;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13.3333, cyto_plas 9.83333,
nucl 5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000014449
(
AK057842
)
(Tubulin alpha-1A chain; Alpha-tubulin 3; Tubulin B-alpha-1; Tubulin alpha-3 chain;)
genome : 49,578,580 - 49,582,861 (4,282)
query : 1 - 1,668 (1,668/1,668)
4 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000071173
(
AF141348
)
(Tubulin family protein.)
genome : 49,578,587 - 49,579,774 (1,188)
query : 7 - 1,194 (1,188/1,197)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.992
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 16, extr 4, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000492399
(
AK297775
)
(Tubulin alpha chain; Fragment;)
genome : 49,578,585 - 49,582,861 (4,277)
query : 1 - 856 (856/856)
3 exons
identity = 0.988
3'(0.981;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13, nucl 6.5, cysk 6, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000114276 (
ENST00000295766
)
(Tubulin family protein.)
genome : 49,578,742 - 49,582,682 (3,941)
query : 1 - 1,887 (1,887/1,887)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000422280
(
AK289483
)
(Tubulin alpha-1A chain; Alpha-tubulin 3; Tubulin B-alpha-1; Tubulin alpha-3 chain;)
genome : 49,578,742 - 49,582,474 (3,733)
query : 1 - 1,679 (1,679/1,679)
4 exons
identity = 0.999
3'(0.999;0.993;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000493462
(
AK298838
)
(Tubulin alpha-1 chain; Fragment;)
genome : 49,578,761 - 49,582,863 (4,103)
query : 1 - 1,343 (1,343/1,343)
4 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, cyto 9.5, mito 9, nucl 7.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000664476 (
ENST00000550767
)
(Tubulin family protein.)
genome : 49,578,793 - 49,580,647 (1,855)
query : 1 - 1,384 (1,384/1,384)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, mito 6, nucl 5.5, extr 4,
mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000662009 (
ENST00000547939
)
(Tubulin family protein.)
genome : 49,579,385 - 49,582,849 (3,465)
query : 1 - 946 (946/946)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 29, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000661119 (
ENST00000546918
)
(Tubulin family protein.)
genome : 49,579,404 - 49,582,849 (3,446)
query : 1 - 984 (984/984)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000666348 (
ENST00000552924
)
(Tubulin family protein.)
genome : 49,579,708 - 49,582,861 (3,154)
query : 1 - 628 (628/628)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 11, extr 10, nucl 5, extr_plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000662374 (
ENST00000548363
)
(Tubulin family protein.)
genome : 49,579,799 - 49,580,617 (819)
query : 7 - 673 (667/673)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 19, cyto_nucl 9, nucl 6, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000664019 (
ENST00000550254
)
(Tubulin family protein.)
genome : 49,579,946 - 49,582,784 (2,839)
query : 1 - 696 (696/696)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 14.5, cyto 9.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010598
HIT000664516 (
ENST00000550811
)
(Tubulin family protein.)
genome : 49,580,436 - 49,581,241 (806)
query : 1 - 650 (650/650)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 4.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010598)
HIX0010601
HIT000663415 (
ENST00000549554
)
(Hypothetical short protein.)
genome : 49,582,519 - 49,602,684 (20,166)
query : 1 - 560 (560/560)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 8, E.R._mito 8, cyto_nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000664305 (
ENST00000550574
)
(Conserved hypothetical protein.)
genome : 49,602,329 - 49,650,272 (47,944)
query : 1 - 573 (573/573)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 10, cyto_nucl 7.5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000488213
(
AK293589
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 49,621,709 - 49,667,114 (45,406)
query : 1 - 1,692 (1,692/1,692)
4 exons
identity = 0.998
5'(1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13.5, nucl 6, cysk 4, extr 2,
mito 2, cysk_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000640409 (
ENST00000541364
)
(Tubulin family protein.)
genome : 49,621,709 - 49,667,114 (45,406)
query : 1 - 1,692 (1,692/1,692)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13.5, nucl 6, cysk 4, extr 2,
mito 2, cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000663645 (
ENST00000549818
)
(Conserved hypothetical protein.)
genome : 49,621,710 - 49,663,310 (41,601)
query : 1 - 536 (536/536)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, cyto_nucl 9, nucl 7.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000665933 (
ENST00000552448
)
(Tubulin family protein.)
genome : 49,621,713 - 49,667,111 (45,399)
query : 1 - 1,800 (1,800/1,800)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15, nucl 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000665651 (
ENST00000552125
)
(Tubulin family protein.)
genome : 49,621,826 - 49,663,720 (41,895)
query : 1 - 575 (575/575)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 13.5, extr 7, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0220368
HIT000662945 (
ENST00000549023
)
(Hypothetical short protein.)
genome : 49,627,352 - 49,658,539 (31,188)
query : 1 - 674 (674/674)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 4, nucl 3, mito 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220368)
HIX0010601
HIT000115772 (
ENST00000301072
)
(Tubulin family protein.)
genome : 49,658,690 - 49,667,109 (8,420)
query : 1 - 1,724 (1,724/1,724)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000260743
(
BC063036
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 49,658,884 - 49,667,115 (8,232)
query : 42 - 1,577 (1,536/1,614)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.998)3'
coverage = 0.974
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000663086 (
ENST00000549183
)
(Tubulin family protein.)
genome : 49,658,864 - 49,663,979 (5,116)
query : 1 - 696 (696/696)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 24, cyto_nucl 5.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000101219
(
D28390
)
(Non-protein coding transcript.)
genome : 49,658,864 - 49,658,967 (104)
query : 1 - 104 (104/107)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.972
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000032545
(
BC005946
)
Representative transcript
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 49,658,865 - 49,667,113 (8,249)
query : 1 - 1,553 (1,553/1,582)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.998)3'
coverage = 0.999
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000210821 (
NM_032704
)
(Tubulin family protein.)
genome : 49,658,865 - 49,667,113 (8,249)
query : 1 - 1,553 (1,553/1,581)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.998)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000330804
(
AK223024
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 49,658,865 - 49,667,115 (8,251)
query : 1 - 1,555 (1,555/1,574)
4 exons
identity = 0.998
5'(1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000035455
(
BC011790
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 49,658,884 - 49,667,115 (8,232)
query : 1 - 1,536 (1,536/1,553)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000032104
(
BC004949
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 49,658,885 - 49,667,115 (8,231)
query : 1 - 1,535 (1,535/1,558)
4 exons
identity = 0.996
5'(1.000;1.000;0.987;0.996)3'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000053611
(
BC051297
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 49,658,889 - 49,667,121 (8,233)
query : 1 - 1,537 (1,537/1,566)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 0.999
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000041779
(
BC033064
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 49,658,889 - 49,667,115 (8,227)
query : 1 - 1,053 (1,053/1,070)
5 exons
identity = 0.974
5'(1.000;1.000;0.980;0.957;0.968)3'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 15, cyto_nucl 11.5, cyto 11, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000038618
(
BC019298
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 49,658,903 - 49,667,115 (8,213)
query : 1 - 1,517 (1,517/1,534)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000039076
(
BC021088
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 49,658,904 - 49,667,115 (8,212)
query : 1 - 1,516 (1,516/1,542)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
IPR008280 : Tubulin/FtsZ, C-terminal
IPR017975 : Tubulin, conserved site
IPR018316 : Tubulin/FtsZ, 2-layer sandwich domain
IPR023123 : Tubulin, C-terminal
GO :
0003924 : Molecular Function : GTPase activity
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0006184 : Biological Process : GTP catabolic process
0007017 : Biological Process : microtubule-based process
0043234 : Cellular Component : protein complex
0051258 : Biological Process : protein polymerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000664211 (
ENST00000550468
)
(Alpha tubulin family protein.)
genome : 49,658,939 - 49,667,089 (8,151)
query : 1 - 680 (680/680)
2 exons
identity = 0.991
5'(1.000;0.991)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, extr 11, cyto_nucl 9.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010601
HIT000662464 (
ENST00000548470
)
(Alpha tubulin family protein.)
genome : 49,663,569 - 49,666,949 (3,381)
query : 1 - 1,105 (1,105/1,105)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 13, nucl 8, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010601)
HIX0010600
HIT000022934
(
AK098083
)
Representative transcript
(Conserved hypothetical protein.)
genome : 49,672,836 - 49,676,768 (3,933)
query : 1 - 2,535 (2,535/2,535)
2 exons
identity = 0.996
3'(0.995;0.997)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010600)
HIX0026468
HIT000047929
(
AK128056
)
Representative transcript
(Desmin;)
genome : 49,686,414 - 49,718,359 (31,946)
query : 1 - 4,166 (4,166/4,166)
8 exons
identity = 1.000
3'(1.000;0.989;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 16.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026468)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : ENSMMUT00000046733
Pongo
sp. (Orangutan) : ENSPPYT00000005319
Pan
sp. (Chimpanzee) : ENSPTRT00000057361
HIX0026468
HIT000666641 (
ENST00000553259
)
(Desmin;)
genome : 49,686,414 - 49,718,359 (31,946)
query : 1 - 4,166 (4,166/4,166)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 16.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026468)
HIX0010599
HIT000664849 (
ENST00000551194
)
(Non-protein coding transcript.)
genome : 49,687,035 - 49,687,780 (746)
query : 1 - 564 (564/564)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010599)
HIX0010599
HIT000045460
(
AK125587
)
(Intermediate filament protein family protein.)
genome : 49,687,485 - 49,692,465 (4,981)
query : 1 - 3,241 (3,241/3,241)
9 exons
identity = 0.998
5'(0.999;1.000;1.000;0.994;1.000;0.995;1.000;
1.000;0.997)3'
coverage = 1.000
InterPro :
IPR001664 : Intermediate filament protein
IPR002957 : Keratin, type I
IPR006821 : Intermediate filament head, DNA-binding domain
IPR018039 : Intermediate filament protein, conserved site
IPR027700 : Peripherin/Plasticin
GO :
0005198 : Molecular Function : structural molecule activity
0005882 : Cellular Component : intermediate filament
0045098 : Cellular Component : type III intermediate filament
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, mito 10, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010599)
HIX0010599
HIT000107179 (
ENST00000257860
)
(Intermediate filament protein family protein.)
genome : 49,687,485 - 49,692,465 (4,981)
query : 1 - 3,241 (3,241/3,241)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, mito 10, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010599)
HIX0010599
HIT000202868 (
NM_006262
)
(Intermediate filament protein family protein.)
genome : 49,688,909 - 49,692,481 (3,573)
query : 1 - 1,833 (1,833/1,833)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, mito 10, cyto 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010599)
HIX0010599
HIT000041679
(
BC032703
)
Representative transcript
(Intermediate filament protein family protein.)
genome : 49,688,949 - 49,692,466 (3,518)
query : 1 - 1,778 (1,778/1,905)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001664 : Intermediate filament protein
IPR002957 : Keratin, type I
IPR006821 : Intermediate filament head, DNA-binding domain
IPR018039 : Intermediate filament protein, conserved site
IPR027700 : Peripherin/Plasticin
GO :
0005198 : Molecular Function : structural molecule activity
0005882 : Cellular Component : intermediate filament
0045098 : Cellular Component : type III intermediate filament
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, mito 10, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010599)
HIX0010599
HIT000549825 (
ENST00000451891
)
(Intermediate filament protein family protein.)
genome : 49,689,145 - 49,691,021 (1,877)
query : 1 - 704 (704/704)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010599)
HIX0010599
HIT000632482 (
ENST00000533401
)
(Intermediate filament protein family protein.)
genome : 49,689,534 - 49,691,207 (1,674)
query : 1 - 946 (946/946)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 15.5, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010599)
HIX0010599
HIT000636297 (
ENST00000537252
)
(Conserved hypothetical protein.)
genome : 49,689,549 - 49,690,673 (1,125)
query : 1 - 630 (630/630)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010599)
HIX0010599
HIT000631438 (
ENST00000532332
)
(Intermediate filament protein family protein.)
genome : 49,690,785 - 49,692,375 (1,591)
query : 1 - 840 (840/840)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010599)
HIX0010599
HIT000629776 (
ENST00000530631
)
(Intermediate filament protein family protein.)
genome : 49,690,904 - 49,692,431 (1,528)
query : 1 - 865 (865/865)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.5, cyto 16, nucl 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010599)
HIX0219880
pHIT000021611 ( pHIT000021611 )
(Conserved hypothetical protein.)
genome : 49,716,627 - 49,725,400 (8,774)
query : 1 - 1,752 (1,752/1,752)
12 exons
InterPro :
IPR026133 : Tastin
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
CAGE tag :
H27BD92F1207
HIX0219880
pHIT000085793 ( pHIT000085793 )
(Conserved hypothetical protein.)
genome : 49,716,627 - 49,725,400 (8,774)
query : 1 - 1,719 (1,719/1,719)
12 exons
InterPro :
IPR026133 : Tastin
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
CAGE tag :
H27BD92F1207
HIX0219880
pHIT000111636 ( pHIT000111636 )
(Conserved hypothetical protein.)
genome : 49,716,627 - 49,725,400 (8,774)
query : 1 - 1,716 (1,716/1,716)
12 exons
InterPro :
IPR026133 : Tastin
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
CAGE tag :
T12F02DC0D12
HIX0219880
pHIT000111637 ( pHIT000111637 )
(Conserved hypothetical protein.)
genome : 49,716,627 - 49,725,400 (8,774)
query : 1 - 1,683 (1,683/1,683)
12 exons
InterPro :
IPR026133 : Tastin
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
CAGE tag :
T12F02DC78A4
HIX0219880
HIT000485539 (
NM_001100620
)
(Tastin family protein.)
genome : 49,716,971 - 49,718,170 (1,200)
query : 1 - 737 (737/754)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22.5, cyto_mito 13.5, cyto 3.5, extr 3, nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0219880
HIT000663162 (
ENST00000549275
)
(Tastin family protein.)
genome : 49,717,019 - 49,718,079 (1,061)
query : 1 - 348 (348/348)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 7.16667, cyto 6, mito 6,
cyto_pero 4.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0219880
HIT000662327 (
ENST00000548311
)
(Tastin family protein.)
genome : 49,717,038 - 49,718,199 (1,162)
query : 1 - 623 (623/623)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13.5, cyto_mito 11.8333, cyto_nucl 9, cyto 8,
cyto_pero 6, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0219880
HIT000361606 (
ENST00000380327
)
(Tastin family protein.)
genome : 49,717,038 - 49,718,175 (1,138)
query : 1 - 675 (675/675)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22.5, cyto_mito 13.5, cyto 3.5, extr 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0219880
HIT000664426 (
ENST00000550709
)
(Tastin family protein.)
genome : 49,717,040 - 49,718,163 (1,124)
query : 1 - 778 (778/778)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20.5, cyto_mito 14.1667, cyto 6.5,
cyto_nucl 5.16667, cyto_pero 4.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0219880
HIT000663397 (
ENST00000549534
)
(Tastin family protein.)
genome : 49,717,056 - 49,718,148 (1,093)
query : 1 - 839 (839/839)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, extr 11, cyto 5.5, extr_plas 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0219880
HIT000089650
(
BC018627
)
Representative transcript
(Tastin isoform 2.)
genome : 49,717,078 - 49,718,153 (1,076)
query : 1 - 537 (537/561)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026133 : Tastin
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13.5, cyto_mito 11.8333, cyto_nucl 9, cyto 8,
cyto_pero 6, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0219880
HIT000087668
(
BC011597
)
(Tastin isoform 2.)
genome : 49,717,103 - 49,718,160 (1,058)
query : 1 - 595 (595/612)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026133 : Tastin
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22.5, cyto_mito 13.5, cyto 3.5, extr 3, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0219880
HIT000665162 (
ENST00000551567
)
(Tastin family protein.)
genome : 49,717,157 - 49,717,820 (664)
query : 1 - 572 (572/577)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, cyto 6.5, cyto_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0219880
HIT000662760 (
ENST00000548817
)
(Conserved hypothetical protein.)
genome : 49,719,236 - 49,720,503 (1,268)
query : 1 - 480 (480/480)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 10.5, nucl 10, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0219880
HIT000661995 (
ENST00000547923
)
(Tastin family protein.)
genome : 49,720,424 - 49,725,491 (5,068)
query : 1 - 1,652 (1,652/1,652)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 16.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219880)
HIX0036726
HIT000339703
(
BC110812
)
Representative transcript
(Complement C1q-like protein 4; C1q and tumor necrosis factor-related protein 11; C1qTNF11; Precursor;)
genome : 49,726,194 - 49,730,966 (4,773)
query : 4 - 2,069 (2,066/2,138)
2 exons
identity = 0.998
3'(1.000;0.997)5'
coverage = 0.998
InterPro :
IPR001073 : Complement C1q protein
IPR008983 : Tumour necrosis factor-like domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036726)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : DQ002403
Equus
sp. (Horse) : ENSECAT00000002534
Macaca
sp. (Macaque) : ENSMMUT00000010555
Monodelphis
sp. (Opossum) : ENSMODT00000005280
Oryzias
sp. (Medaka) : ENSORLT00000009337
Pongo
sp. (Orangutan) : ENSPPYT00000005321
Tetraodon
sp. (Tetraodon) : GSTENT00028104001
Takifugu
sp. (Fugu) : SINFRUT00000154425
Takifugu
sp. (Fugu) : SINFRUT00000161957
Rattus
sp. (Rat) : XM_001063140
Danio
sp. (Zebrafish) : XM_001920670
Pan
sp. (Chimpanzee) : XM_522377
Danio
sp. (Zebrafish) : XM_682618
Canis
sp. (Dog) : XM_845969
Bos
sp. (Cow) : XM_869002
HIX0036726
HIT000080331
(
AF466366
)
(Complement C1q-like protein 4; C1q and tumor necrosis factor-related protein 11; C1qTNF11; Precursor;)
genome : 49,726,200 - 49,730,971 (4,772)
query : 1 - 2,065 (2,065/2,065)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001073 : Complement C1q protein
IPR008983 : Tumour necrosis factor-like domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036726)
HIX0036726
HIT000128831 (
ENST00000334221
)
(Complement C1q-like protein 4; C1q and tumor necrosis factor-related protein 11; C1qTNF11; Precursor;)
genome : 49,726,200 - 49,730,971 (4,772)
query : 1 - 2,065 (2,065/2,065)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036726)
HIX0036726
HIT000316490 (
NM_001008223
)
(Complement C1q-like protein 4; C1q and tumor necrosis factor-related protein 11; C1qTNF11; Precursor;)
genome : 49,726,200 - 49,730,971 (4,772)
query : 1 - 2,065 (2,065/2,065)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036726)
HIX0201840
HIT000012361
(
AK055747
)
Representative transcript
(DnaJ homolog subfamily C member 22.)
genome : 49,740,700 - 49,745,683 (4,984)
query : 1 - 2,626 (2,626/2,626)
4 exons
identity = 0.998
5'(1.000;0.998;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR001623 : DnaJ domain
IPR007829 : TM2 domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, extr 3, E.R. 1.5, E.R._mito 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201840)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK050294
Rattus
sp. (Rat) : BC086949
Bos
sp. (Cow) : BC118149
Tetraodon
sp. (Tetraodon) : CR642593
Pongo
sp. (Orangutan) : CR858714
Equus
sp. (Horse) : ENSECAT00000002716
Oryzias
sp. (Medaka) : ENSORLT00000009561
Macaca
sp. (Macaque) : XM_001109497
Pan
sp. (Chimpanzee) : XM_001158376
Danio
sp. (Zebrafish) : XM_001335344
Monodelphis
sp. (Opossum) : XM_001374031
Gallus
sp. (Chicken) : XM_428430
Canis
sp. (Dog) : XM_543683
HIX0201840
HIT000663314 (
ENST00000549441
)
(TM2 domain containing protein.)
genome : 49,740,700 - 49,745,683 (4,984)
query : 1 - 2,628 (2,628/2,628)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, extr 3, E.R. 1.5, E.R._mito 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201840)
HIX0201840
HIT000478456 (
ENST00000395069
)
(TM2 domain containing protein.)
genome : 49,740,821 - 49,745,684 (4,864)
query : 1 - 2,046 (2,046/2,069)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, extr 3, E.R. 1.5, E.R._mito 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201840)
HIX0201840
HIT000041851
(
BC033236
)
(DnaJ homolog subfamily C member 22.)
genome : 49,741,041 - 49,745,684 (4,644)
query : 1 - 1,826 (1,826/1,854)
3 exons
identity = 0.998
5'(1.000;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR001623 : DnaJ domain
IPR007829 : TM2 domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, extr 3, E.R. 1.5, E.R._mito 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201840)
HIX0201840
HIT000209582 (
NM_024902
)
(TM2 domain containing protein.)
genome : 49,741,041 - 49,745,684 (4,644)
query : 1 - 1,826 (1,826/1,854)
3 exons
identity = 0.998
5'(1.000;1.000;0.995)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, extr 3, E.R. 1.5, E.R._mito 1.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201840)
HIX0201840
HIT000664812 (
ENST00000551153
)
(DnaJ domain containing protein.)
genome : 49,745,068 - 49,747,925 (2,858)
query : 1 - 490 (490/490)
2 exons
identity = 0.994
5'(1.000;0.982)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, mito 10, cyto_nucl 10, extr 6, nucl 5,
E.R._mito 5, mito_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201840)
HIX0201840
HIT000666111 (
ENST00000552651
)
(Hypothetical short protein.)
genome : 49,745,340 - 49,751,309 (5,970)
query : 1 - 438 (438/438)
2 exons
identity = 0.993
5'(1.000;0.992)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201840)
HIX0201840
HIT000023885
(
AL049983
)
(Conserved hypothetical protein.)
genome : 49,747,461 - 49,749,207 (1,747)
query : 4 - 1,751 (1,748/1,785)
1 exon
identity = 0.986
5'(0.986)3'
coverage = 0.989
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201840)
HIX0021855
HIT000664676 (
ENST00000550997
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,760,367 - 49,888,554 (128,188)
query : 1 - 675 (675/675)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, nucl 9, mito 8, extr 4, E.R._mito 4,
mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000663401 (
ENST00000549538
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,760,639 - 49,883,342 (122,704)
query : 1 - 570 (570/570)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12.5, mito 6, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000208987 (
NM_023071
)
(Spermatogenesis-associated serine-rich protein 2; Serine-rich spermatocytes and round spermatid 59 kDa protein; p59scr;)
genome : 49,760,688 - 49,921,207 (160,520)
query : 1 - 3,796 (3,796/3,796)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000020437
(
AK095582
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,760,688 - 49,920,148 (159,461)
query : 1 - 2,781 (2,781/2,781)
15 exons
identity = 0.999
5'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR009060 : UBA-like
IPR009816 : Protein of unknown function DUF1387
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, mito_nucl 13.5, mito 4.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000663291 (
ENST00000549412
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,760,688 - 49,920,148 (159,461)
query : 1 - 2,781 (2,781/2,781)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, mito_nucl 14, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000664364 (
ENST00000550643
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,760,688 - 49,878,451 (117,764)
query : 1 - 527 (527/527)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, nucl 9.5, cyto_nucl 7.5, extr 6, E.R._mito 6,
mito_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000662623 (
ENST00000548654
)
(Hypothetical protein.)
genome : 49,760,688 - 49,854,820 (94,133)
query : 1 - 546 (546/546)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 9.66667, cyto 7,
extr_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000662673 (
ENST00000548710
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,760,692 - 49,883,344 (122,653)
query : 1 - 558 (558/558)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 13, mito 5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000663082 (
ENST00000549179
)
(Non-protein coding transcript.)
genome : 49,760,712 - 49,854,811 (94,100)
query : 1 - 570 (570/570)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000662386 (
ENST00000548377
)
(Conserved hypothetical protein.)
genome : 49,760,745 - 49,854,820 (94,076)
query : 1 - 552 (552/552)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto_nucl 4.5, cyto 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000663184 (
ENST00000549298
)
(Hypothetical protein.)
genome : 49,761,167 - 49,878,456 (117,290)
query : 1 - 643 (643/643)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 10.5, extr 7, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000089391
(
BC017767
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,761,245 - 49,884,927 (123,683)
query : 1 - 1,046 (1,046/1,074)
5 exons
identity = 0.983
5'(1.000;0.996;1.000;1.000;0.963)3'
coverage = 1.000
InterPro :
IPR009060 : UBA-like
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, mito 6, nucl 3, E.R._mito 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000663258 (
ENST00000549375
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,761,245 - 49,884,927 (123,683)
query : 1 - 1,046 (1,046/1,061)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, mito 6, nucl 3, E.R._mito 3, mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000028526
(
AL833614
)
Representative transcript
(Spermatogenesis-associated serine-rich protein 2; Serine-rich spermatocytes and round spermatid 59 kDa protein; p59scr;)
genome : 49,761,248 - 49,921,205 (159,958)
query : 2 - 3,318 (3,317/3,347)
15 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.997)3'
coverage = 0.999
InterPro :
IPR009060 : UBA-like
IPR009816 : Protein of unknown function DUF1387
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC072579
Danio
sp. (Zebrafish) : ENSDART00000098001
Oryzias
sp. (Medaka) : ENSORLT00000018978
Pongo
sp. (Orangutan) : ENSPPYT00000005323
Pan
sp. (Chimpanzee) : ENSPTRT00000009071
Tetraodon
sp. (Tetraodon) : GSTENT00023571001
Takifugu
sp. (Fugu) : SINFRUT00000129697
Rattus
sp. (Rat) : XM_001061947
Macaca
sp. (Macaque) : XM_001101258
Equus
sp. (Horse) : XM_001915886
Canis
sp. (Dog) : XM_534811
Bos
sp. (Cow) : XM_870184
HIX0021855
HIT000666529 (
ENST00000553127
)
(Spermatogenesis-associated serine-rich protein 2; Serine-rich spermatocytes and round spermatid 59 kDa protein; p59scr;)
genome : 49,761,248 - 49,921,205 (159,958)
query : 1 - 3,318 (3,318/3,318)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000122936 (
ENST00000321898
)
(Spermatogenesis-associated serine-rich protein 2; Serine-rich spermatocytes and round spermatid 59 kDa protein; p59scr;)
genome : 49,761,258 - 49,921,202 (159,945)
query : 1 - 3,158 (3,158/3,158)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000053321
(
BC048299
)
(Spermatogenesis-associated serine-rich protein 2; Serine-rich spermatocytes and round spermatid 59 kDa protein; p59scr;)
genome : 49,761,258 - 49,920,719 (159,462)
query : 1 - 2,675 (2,675/2,689)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR009060 : UBA-like
IPR009816 : Protein of unknown function DUF1387
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000665139 (
ENST00000551540
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,761,279 - 49,883,359 (122,081)
query : 1 - 713 (713/720)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.990
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13.5, nucl 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000425131
(
AK292334
)
(Spermatogenesis-associated serine-rich protein 2; Serine-rich spermatocytes and round spermatid 59 kDa protein; p59scr;)
genome : 49,761,288 - 49,920,163 (158,876)
query : 1 - 2,089 (2,089/2,089)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.995;1.000)3'
coverage = 1.000
InterPro :
IPR009060 : UBA-like
IPR009816 : Protein of unknown function DUF1387
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000006476
(
AK023202
)
(Spermatogenesis-associated serine-rich protein 2; Serine-rich spermatocytes and round spermatid 59 kDa protein; p59scr;)
genome : 49,761,293 - 49,921,009 (159,717)
query : 5 - 2,996 (2,992/2,996)
14 exons
identity = 0.997
5'(1.000;0.984;0.993;1.000;1.000;1.000;0.996;
1.000;1.000;1.000;1.000;1.000;1.000;0.996)3'
coverage = 0.999
InterPro :
IPR009060 : UBA-like
IPR009816 : Protein of unknown function DUF1387
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000666342 (
ENST00000552918
)
(Spermatogenesis-associated serine-rich protein 2; Serine-rich spermatocytes and round spermatid 59 kDa protein; p59scr;)
genome : 49,761,293 - 49,921,009 (159,717)
query : 1 - 2,993 (2,993/2,993)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000662728 (
ENST00000548777
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,761,301 - 49,878,446 (117,146)
query : 1 - 505 (505/505)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 10, nucl 9, extr 8, mito 4,
extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000057563
(
BX648916
)
(Spermatogenesis-associated serine-rich protein 2; Serine-rich spermatocytes and round spermatid 59 kDa protein; p59scr;)
genome : 49,761,317 - 49,921,198 (159,882)
query : 2 - 3,099 (3,098/3,116)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.996;1.000;
0.993;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR009060 : UBA-like
IPR009816 : Protein of unknown function DUF1387
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000092664
(
BC032441
)
(Conserved hypothetical protein.)
genome : 49,761,330 - 49,857,408 (96,079)
query : 1 - 1,814 (1,814/1,841)
5 exons
identity = 0.991
5'(1.000;1.000;1.000;1.000;0.988)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 8.5, extr_plas 8.5, cyto_nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000661943 (
ENST00000547865
)
(Conserved hypothetical protein.)
genome : 49,761,330 - 49,857,408 (96,079)
query : 1 - 1,810 (1,810/1,810)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 8.5, extr_plas 8.5, cyto_nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000662396 (
ENST00000548388
)
(Hypothetical protein.)
genome : 49,761,330 - 49,855,012 (93,683)
query : 1 - 564 (564/564)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 8.5, cyto_nucl 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000665693 (
ENST00000552171
)
(Non-protein coding transcript.)
genome : 49,761,330 - 49,854,820 (93,491)
query : 1 - 459 (459/465)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.987
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0211112
HIT000658736 (
NR_033267
)
(Suppressor of IKBKE 1 family protein.)
genome : 49,782,957 - 49,786,118 (3,162)
query : 1 - 3,162 (3,162/3,162)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16.1667, cyto_plas 10.8333,
nucl 10
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211112)
HIX0211112
HIT000665457 (
ENST00000551907
)
(Suppressor of IKBKE 1 family protein.)
genome : 49,783,299 - 49,783,945 (647)
query : 1 - 647 (647/647)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16.1667, cyto_plas 10.8333,
nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211112)
HIX0220400
HIT000663424 (
ENST00000549563
)
(Conserved hypothetical protein.)
genome : 49,836,207 - 49,836,435 (229)
query : 1 - 229 (229/229)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 12, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220400)
HIX0021855
HIT000662967 (
ENST00000549045
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,854,662 - 49,888,727 (34,066)
query : 1 - 701 (701/701)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 11, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000328577
(
AB075515
)
(Spermatogenesis-associated serine-rich protein 2; Serine-rich spermatocytes and round spermatid 59 kDa protein; p59scr;)
genome : 49,854,779 - 49,921,014 (66,236)
query : 1 - 2,631 (2,631/2,631)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR009060 : UBA-like
IPR009816 : Protein of unknown function DUF1387
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000006453
(
AK023179
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,883,246 - 49,921,207 (37,962)
query : 2 - 2,706 (2,705/2,706)
10 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR009816 : Protein of unknown function DUF1387
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, mito_nucl 15, cyto_nucl 12.8333, mito 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000666031 (
ENST00000552557
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,883,898 - 49,908,396 (24,499)
query : 1 - 727 (727/727)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 14, extr 5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000666115 (
ENST00000552655
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,883,905 - 49,890,672 (6,768)
query : 1 - 562 (562/562)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 6, extr 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000007952
(
AK024678
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,893,865 - 49,921,198 (27,334)
query : 1 - 2,082 (2,082/2,099)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.995;0.999)3'
coverage = 1.000
InterPro :
IPR009816 : Protein of unknown function DUF1387
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, mito_nucl 16.3333, nucl 14,
cyto_nucl 7.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000662687 (
ENST00000548727
)
(SPATS2-like protein isoform b.)
genome : 49,908,225 - 49,916,636 (8,412)
query : 1 - 275 (275/275)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 12, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0021855
HIT000661194 (
ENST00000547003
)
(Spermatogenesis-associated serine-rich protein 2.)
genome : 49,916,532 - 49,919,981 (3,450)
query : 1 - 441 (441/441)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, extr 12, cyto_nucl 10.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021855)
HIX0010605
HIT000107211 (
ENST00000257981
)
(Potassium voltage-gated channel subfamily H member 3; Brain-specific eag-like channel 1; BEC1; Ether-a-go-go-like potassium channel 2; ELK channel 2; ELK2; Voltage-gated potassium channel subunit Kv12.2;)
genome : 49,932,940 - 49,952,091 (19,152)
query : 1 - 3,867 (3,867/3,867)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010605)
HIX0010605
HIT000000998
(
AB033108
)
Representative transcript
(Potassium voltage-gated channel subfamily H member 3; Brain-specific eag-like channel 1; BEC1; Ether-a-go-go-like potassium channel 2; ELK channel 2; ELK2; Voltage-gated potassium channel subunit Kv12.2;)
genome : 49,932,940 - 49,952,077 (19,138)
query : 1 - 3,853 (3,853/3,853)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010605)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB022697
Mus
sp. (Mouse) : AY380579
Oryzias
sp. (Medaka) : ENSORLT00000005614
Pongo
sp. (Orangutan) : ENSPPYT00000005324
Tetraodon
sp. (Tetraodon) : GSTENT00027123001
Takifugu
sp. (Fugu) : SINFRUT00000157649
Takifugu
sp. (Fugu) : SINFRUT00000181935
Macaca
sp. (Macaque) : XM_001109598
Equus
sp. (Horse) : XM_001504202
Danio
sp. (Zebrafish) : XM_001919401
Pan
sp. (Chimpanzee) : XM_509046
Canis
sp. (Dog) : XM_543682
Bos
sp. (Cow) : XM_592255
Danio
sp. (Zebrafish) : XM_690738
HIX0010605
HIT000317096 (
NM_012284
)
(Potassium voltage-gated channel subfamily H member 3; Brain-specific eag-like channel 1; BEC1; Ether-a-go-go-like potassium channel 2; ELK channel 2; ELK2; Voltage-gated potassium channel subunit Kv12.2;)
genome : 49,932,940 - 49,952,077 (19,138)
query : 1 - 3,853 (3,853/3,853)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010605)
HIX0010605
HIT000502680
(
BC144254
)
(Potassium voltage-gated channel subfamily H member 3.)
genome : 49,933,059 - 49,952,042 (18,984)
query : 1 - 3,695 (3,695/3,695)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000014 : PAS domain
IPR000595 : Cyclic nucleotide-binding domain
IPR000700 : PAS-associated, C-terminal
IPR001610 : PAC motif
IPR003938 : Potassium channel, voltage-dependent, EAG/ELK/ERG
IPR003950 : Potassium channel, voltage-dependent, ELK
IPR005821 : Ion transport domain
IPR014710 : RmlC-like jelly roll fold
IPR018490 : Cyclic nucleotide-binding-like
GO :
0000155 : Molecular Function : phosphorelay sensor kinase activity
0000160 : Biological Process : phosphorelay signal transduction system
0004871 : Molecular Function : signal transducer activity
0005216 : Molecular Function : ion channel activity
0005249 : Molecular Function : voltage-gated potassium channel activity
0006811 : Biological Process : ion transport
0006813 : Biological Process : potassium ion transport
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010605)
HIX0010605
HIT000503298
(
BC150602
)
(Potassium voltage-gated channel subfamily H member 3; Brain-specific eag-like channel 1; BEC1; Ether-a-go-go-like potassium channel 2; ELK channel 2; ELK2; Voltage-gated potassium channel subunit Kv12.2;)
genome : 49,933,059 - 49,952,034 (18,976)
query : 1 - 3,691 (3,691/3,691)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000014 : PAS domain
IPR000595 : Cyclic nucleotide-binding domain
IPR000700 : PAS-associated, C-terminal
IPR001610 : PAC motif
IPR003938 : Potassium channel, voltage-dependent, EAG/ELK/ERG
IPR003950 : Potassium channel, voltage-dependent, ELK
IPR005821 : Ion transport domain
IPR014710 : RmlC-like jelly roll fold
IPR018490 : Cyclic nucleotide-binding-like
GO :
0000155 : Molecular Function : phosphorelay sensor kinase activity
0000160 : Biological Process : phosphorelay signal transduction system
0004871 : Molecular Function : signal transducer activity
0005216 : Molecular Function : ion channel activity
0005249 : Molecular Function : voltage-gated potassium channel activity
0006811 : Biological Process : ion transport
0006813 : Biological Process : potassium ion transport
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010605)
HIX0010605
HIT000058751
(
AB022696
)
(Potassium voltage-gated channel subfamily H member 3; Brain-specific eag-like channel 1; BEC1; Ether-a-go-go-like potassium channel 2; ELK channel 2; ELK2; Voltage-gated potassium channel subunit Kv12.2;)
genome : 49,933,165 - 49,952,059 (18,895)
query : 1 - 3,610 (3,610/3,610)
15 exons
identity = 1.000
5'(0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000014 : PAS domain
IPR000595 : Cyclic nucleotide-binding domain
IPR000700 : PAS-associated, C-terminal
IPR001610 : PAC motif
IPR003938 : Potassium channel, voltage-dependent, EAG/ELK/ERG
IPR003950 : Potassium channel, voltage-dependent, ELK
IPR005821 : Ion transport domain
IPR014710 : RmlC-like jelly roll fold
IPR018490 : Cyclic nucleotide-binding-like
GO :
0000155 : Molecular Function : phosphorelay sensor kinase activity
0000160 : Biological Process : phosphorelay signal transduction system
0004871 : Molecular Function : signal transducer activity
0005216 : Molecular Function : ion channel activity
0005249 : Molecular Function : voltage-gated potassium channel activity
0006811 : Biological Process : ion transport
0006813 : Biological Process : potassium ion transport
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010605)
HIX0010605
HIT000664180 (
ENST00000550434
)
(Potassium voltage-gated channel subfamily H member 3.)
genome : 49,934,877 - 49,937,661 (2,785)
query : 1 - 649 (649/649)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R. 5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010605)
HIX0010605
HIT000665034 (
ENST00000551415
)
(Potassium voltage-gated channel subfamily H member 3.)
genome : 49,938,037 - 49,940,023 (1,987)
query : 1 - 232 (232/232)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010605)
HIX0010605
HIT000092949
(
BC033141
)
(Potassium voltage-gated channel subfamily H member 3.)
genome : 49,949,462 - 49,952,090 (2,629)
query : 1 - 1,411 (1,411/1,432)
4 exons
identity = 0.999
5'(1.000;1.000;0.987;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 17, cyto 8.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010605)
HIX0010605
HIT000662642 (
ENST00000548675
)
(Potassium voltage-gated channel subfamily H member 3.)
genome : 49,949,955 - 49,951,420 (1,466)
query : 1 - 666 (666/666)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 5.83333, cyto 5.5, mito 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010605)
HIX0010606
HIT000665189 (
ENST00000551598
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,950,327 - 49,953,755 (3,429)
query : 4 - 636 (633/636)
6 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.971)5'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, cyto 18.5, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000054863
(
BX538079
)
(Conserved hypothetical protein.)
genome : 49,952,084 - 49,961,914 (9,831)
query : 2 - 1,667 (1,666/1,687)
13 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, extr 10, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000062344
(
AF015308
)
(Microspherule protein 1; 58 kDa microspherule protein; Cell cycle-regulated factor p78; INO80 complex subunit J; MCRS2;)
genome : 49,952,087 - 49,960,625 (8,539)
query : 6 - 1,845 (1,840/1,866)
14 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000;1.000;1.000;1.000;1.000;0.992)5'
coverage = 0.997
InterPro :
IPR000253 : Forkhead-associated (FHA) domain
IPR008984 : SMAD/FHA domain
IPR025999 : Microspherule protein, N-terminal domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000035457
(
BC011794
)
Representative transcript
(Microspherule protein 1; 58 kDa microspherule protein; Cell cycle-regulated factor p78; INO80 complex subunit J; MCRS2;)
genome : 49,952,087 - 49,961,911 (9,825)
query : 1 - 1,919 (1,919/1,937)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000253 : Forkhead-associated (FHA) domain
IPR008984 : SMAD/FHA domain
IPR025999 : Microspherule protein, N-terminal domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000202941 (
NM_006337
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,952,087 - 49,961,911 (9,825)
query : 1 - 1,919 (1,919/1,937)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000316860 (
NM_001012300
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,952,087 - 49,960,222 (8,136)
query : 1 - 1,767 (1,767/1,785)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, mito 11, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000065587
(
AF068007
)
(Conserved hypothetical protein.)
genome : 49,952,089 - 49,961,533 (9,445)
query : 22 - 2,474 (2,453/2,490)
14 exons
identity = 0.990
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.983;0.899)5'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, extr 10, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000662577 (
ENST00000548602
)
(Conserved hypothetical protein.)
genome : 49,952,084 - 49,961,914 (9,831)
query : 1 - 1,666 (1,666/1,666)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, extr 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000665211 (
ENST00000551625
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,952,085 - 49,961,533 (9,449)
query : 1 - 2,450 (2,450/2,450)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000645289 (
ENST00000546244
)
(Conserved hypothetical protein.)
genome : 49,952,088 - 49,961,914 (9,827)
query : 1 - 1,662 (1,662/1,662)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, extr 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000136440 (
ENST00000343810
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,952,103 - 49,961,936 (9,834)
query : 1 - 1,928 (1,928/1,928)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000663941 (
ENST00000550165
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,952,146 - 49,961,884 (9,739)
query : 1 - 1,936 (1,936/1,936)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000666064 (
ENST00000552596
)
(Conserved hypothetical protein.)
genome : 49,952,262 - 49,953,043 (782)
query : 1 - 669 (669/669)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, extr 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000662615 (
ENST00000548646
)
(Conserved hypothetical protein.)
genome : 49,952,287 - 49,953,563 (1,277)
query : 1 - 608 (608/608)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, extr 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000661344 (
ENST00000547182
)
(Conserved hypothetical protein.)
genome : 49,952,356 - 49,956,858 (4,503)
query : 1 - 724 (724/724)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, extr 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000251918
(
AY336730
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,952,426 - 49,960,222 (7,797)
query : 1 - 1,428 (1,428/1,428)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000253 : Forkhead-associated (FHA) domain
IPR008984 : SMAD/FHA domain
IPR025999 : Microspherule protein, N-terminal domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, mito 11, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000311016 (
ENST00000357123
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,952,426 - 49,960,222 (7,797)
query : 1 - 1,428 (1,428/1,428)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, mito 11, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000427447
(
AK308581
)
(Hypothetical protein.)
genome : 49,952,796 - 49,961,915 (9,120)
query : 1 - 1,074 (1,074/1,074)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 13, mito 13, extr_plas 8.5, extr 2, nucl 2,
cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000662923 (
ENST00000549000
)
(Hypothetical protein.)
genome : 49,952,796 - 49,961,915 (9,120)
query : 1 - 1,074 (1,074/1,074)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 13, mito 13, extr_plas 8.5, extr 2, nucl 2,
cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000666572 (
ENST00000553173
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,953,521 - 49,961,883 (8,363)
query : 1 - 1,037 (1,037/1,037)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 2, cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000662347 (
ENST00000548334
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,957,270 - 49,961,615 (4,346)
query : 1 - 876 (876/876)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000662571 (
ENST00000548596
)
(Microspherule protein, N-terminal domain containing protein.)
genome : 49,958,264 - 49,961,656 (3,393)
query : 1 - 894 (894/894)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000663391 (
ENST00000549528
)
(Conserved hypothetical protein.)
genome : 49,958,546 - 49,961,633 (3,088)
query : 1 - 646 (646/646)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0010606
HIT000665723 (
ENST00000552206
)
(Conserved hypothetical protein.)
genome : 49,959,313 - 49,961,911 (2,599)
query : 1 - 984 (984/984)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010606)
HIX0210553
HIT000665804 (
ENST00000552301
)
(Conserved hypothetical protein.)
genome : 49,962,001 - 49,977,047 (15,047)
query : 1 - 912 (912/912)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0210553
HIT000661860 (
ENST00000547764
)
(Conserved hypothetical protein.)
genome : 49,962,019 - 49,993,925 (31,907)
query : 1 - 803 (803/803)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0210553
HIT000664732 (
ENST00000551063
)
(Conserved hypothetical protein.)
genome : 49,962,155 - 50,024,408 (62,254)
query : 1 - 531 (531/531)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0220450
HIT000664365 (
ENST00000550644
)
(Conserved hypothetical protein.)
genome : 49,970,623 - 49,971,288 (666)
query : 1 - 570 (570/570)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, mito 6, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220450)
HIX0010607
HIT000563508 (
NR_027450
)
(Protein FAM186B.)
genome : 49,976,658 - 49,999,410 (22,753)
query : 1 - 3,099 (3,099/3,106)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 10.8333, cyto_mito 7.83333,
nucl 6.5, pero 4, plas 2, E.R. 2, golg 2, E.R._golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0010607
HIT000662781 (
ENST00000548841
)
(Protein FAM186B.)
genome : 49,976,668 - 49,992,572 (15,905)
query : 1 - 621 (621/621)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 8, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0010607
HIT000497326
(
AK302702
)
(Protein FAM186B.)
genome : 49,976,669 - 49,999,410 (22,742)
query : 1 - 3,088 (3,088/3,088)
7 exons
identity = 0.999
3'(1.000;1.000;1.000;0.999;1.000;1.000;0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 10.8333, cyto_mito 7.83333,
nucl 7.5, pero 4, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0010607
HIT000632454 (
ENST00000533372
)
(Protein FAM186B.)
genome : 49,976,669 - 49,999,410 (22,742)
query : 1 - 3,088 (3,088/3,088)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 10.8333, cyto_mito 7.83333,
nucl 6.5, pero 4, plas 2, E.R. 2, golg 2, E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0010607
HIT000643186 (
ENST00000544141
)
(Protein FAM186B.)
genome : 49,976,669 - 49,999,410 (22,742)
query : 1 - 3,088 (3,088/3,088)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 10.8333, cyto_mito 7.83333,
nucl 6.5, pero 4, plas 2, E.R. 2, golg 2, E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0010607
HIT000664718 (
ENST00000551047
)
(Protein FAM186B.)
genome : 49,976,991 - 49,999,401 (22,411)
query : 1 - 2,173 (2,173/2,173)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, extr 9, nucl 7, cyto_mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0210553
HIT000626456 (
ENST00000527253
)
(Conserved hypothetical protein.)
genome : 49,977,344 - 49,998,514 (21,171)
query : 1 - 742 (742/742)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0010607
HIT000026598
(
AL713673
)
(Protein FAM186B.)
genome : 49,978,064 - 49,994,261 (16,198)
query : 1 - 1,898 (1,898/1,907)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0010607
HIT000631370 (
ENST00000532262
)
(Protein FAM186B.)
genome : 49,978,061 - 49,994,261 (16,201)
query : 1 - 1,901 (1,901/1,901)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0010607
HIT000051445
(
BC035621
)
(Protein FAM186B;)
genome : 49,981,289 - 49,999,391 (18,103)
query : 1 - 2,912 (2,912/2,980)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;0.999;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 16, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0010607
HIT000025344
(
AL136748
)
Representative transcript
(Protein FAM186B;)
genome : 49,981,289 - 49,999,354 (18,066)
query : 1 - 2,875 (2,875/2,932)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 16, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB070032
Pongo
sp. (Orangutan) : CR859314
Canis
sp. (Dog) : ENSCAFT00000013551
Mus
sp. (Mouse) : NM_001081254
Rattus
sp. (Rat) : XM_001063531
Pan
sp. (Chimpanzee) : XM_001157738
Equus
sp. (Horse) : XM_001492150
Bos
sp. (Cow) : XM_582220
HIX0010607
HIT000210413 (
NM_032130
)
(Protein FAM186B;)
genome : 49,981,289 - 49,999,433 (18,145)
query : 1 - 2,954 (2,954/2,979)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 16, cyto 11
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0010607
HIT000107188 (
ENST00000257894
)
(Protein FAM186B;)
genome : 49,981,288 - 49,999,422 (18,135)
query : 1 - 2,944 (2,944/2,944)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 16, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0010607
HIT000018109
(
AK093242
)
(Protein FAM186B;)
genome : 49,981,290 - 49,999,422 (18,133)
query : 1 - 2,942 (2,942/2,942)
7 exons
identity = 0.999
3'(1.000;0.988;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 16, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010607)
HIX0220590
HIT000666616 (
ENST00000553226
)
(RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 family protein.)
genome : 49,987,874 - 49,988,041 (168)
query : 1 - 168 (168/168)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220590)
HIX0220296
HIT000661767 (
ENST00000547655
)
(ThiJ/PfpI domain containing protein.)
genome : 49,988,931 - 49,989,471 (541)
query : 1 - 541 (541/541)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25.5, cyto_nucl 14.5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220296)
HIX0210553
HIT000608647 (
ENST00000508736
)
(Conserved hypothetical protein.)
genome : 49,993,609 - 49,998,502 (4,894)
query : 1 - 1,861 (1,861/1,861)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0220453
HIT000664427 (
ENST00000550710
)
(Hypoxia induced protein, domain containing protein.)
genome : 50,013,117 - 50,013,395 (279)
query : 1 - 279 (279/279)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, mito 8.5, E.R._mito 6.5, E.R. 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220453)
HIX0210553
HIT000665037 (
ENST00000551418
)
(Conserved hypothetical protein.)
genome : 50,017,197 - 50,025,820 (8,624)
query : 1 - 583 (583/583)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.5, nucl 14.5, cyto 11.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0210553
HIT000043226
(
AK123353
)
Representative transcript
(WW domain containing protein.)
genome : 50,017,353 - 50,028,602 (11,250)
query : 1 - 2,059 (2,059/2,059)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001202 : WW domain
IPR002713 : FF domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto_nucl 3.5, cyto 3, nucl 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0210553
HIT000662434 (
ENST00000548436
)
(WW domain containing protein.)
genome : 50,017,353 - 50,028,602 (11,250)
query : 1 - 2,059 (2,059/2,059)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto_nucl 3.5, cyto 3, nucl 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0210553
HIT000664777 (
ENST00000551111
)
(WW domain containing protein.)
genome : 50,024,327 - 50,027,600 (3,274)
query : 1 - 1,061 (1,061/1,061)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 20, cyto 15.5, nucl 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0210553
HIT000064182
(
AF049525
)
(WW domain containing protein.)
genome : 50,025,269 - 50,027,441 (2,173)
query : 1 - 433 (433/433)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001202 : WW domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 5.5, nucl 5, E.R._mito 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0210553
HIT000664957 (
ENST00000551320
)
(WW domain containing protein.)
genome : 50,026,512 - 50,027,714 (1,203)
query : 1 - 455 (455/455)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto_nucl 3.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210553)
HIX0219749
HIT000025747
(
AL137459
)
Representative transcript
(Pre-mRNA-processing factor 40 homolog B; Huntingtin yeast partner C; Huntingtin-interacting protein C;)
genome : 50,029,671 - 50,038,448 (8,778)
query : 1 - 1,832 (1,832/1,937)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR002713 : FF domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 15, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219749)
HIX0219749
HIT000010391
(
AK027117
)
(Pre-mRNA-processing factor 40 homolog B.)
genome : 50,031,244 - 50,038,448 (7,205)
query : 10 - 1,611 (1,602/1,647)
10 exons
identity = 0.996
5'(0.984;0.989;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.993)3'
coverage = 0.994
InterPro :
IPR002713 : FF domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219749)
HIX0219749
HIT000662402 (
ENST00000548399
)
(FF domain containing protein.)
genome : 50,031,340 - 50,036,087 (4,748)
query : 1 - 455 (455/455)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219749)
HIX0010610
HIT000436119
(
BC159100
)
Representative transcript
(Formin-like protein 3 isoform 1.)
genome : 50,031,723 - 50,101,197 (69,475)
query : 1 - 11,192 (11,192/11,221)
26 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.953;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010472 : Formin, FH3 domain
IPR010473 : Formin, GTPase-binding domain
IPR014768 : Formin, GTPase-binding and FH3 domain
IPR015425 : Formin, FH2 domain
IPR027655 : Formin-like protein 3
GO :
0003779 : Molecular Function : actin binding
0007010 : Biological Process : cytoskeleton organization
0008360 : Biological Process : regulation of cell shape
0016043 : Biological Process : cellular component organization
0016477 : Biological Process : cell migration
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 11.5, nucl 10.5, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK155331
Bos
sp. (Cow) : ENSBTAT00000022075
Equus
sp. (Horse) : ENSECAT00000007057
Pongo
sp. (Orangutan) : ENSPPYT00000005329
Rattus
sp. (Rat) : ENSRNOT00000055452
Tetraodon
sp. (Tetraodon) : GSTENT00028063001
Takifugu
sp. (Fugu) : SINFRUT00000158711
Macaca
sp. (Macaque) : XM_001101726
Gallus
sp. (Chicken) : XM_001234980
Pan
sp. (Chimpanzee) : XM_509048
Canis
sp. (Dog) : XM_543681
HIX0010610
HIT000042433
(
AB095934
)
(Formin-like protein 3 isoform 1.)
genome : 50,031,724 - 50,101,197 (69,474)
query : 1 - 11,191 (11,191/11,191)
26 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.953;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010472 : Formin, FH3 domain
IPR010473 : Formin, GTPase-binding domain
IPR014768 : Formin, GTPase-binding and FH3 domain
IPR015425 : Formin, FH2 domain
IPR027655 : Formin-like protein 3
GO :
0003779 : Molecular Function : actin binding
0007010 : Biological Process : cytoskeleton organization
0008360 : Biological Process : regulation of cell shape
0016043 : Biological Process : cellular component organization
0016477 : Biological Process : cell migration
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 11.5, nucl 10.5, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000129400 (
ENST00000335154
)
(Formin-like protein 3 isoform 1.)
genome : 50,031,724 - 50,101,197 (69,474)
query : 1 - 11,192 (11,192/11,192)
26 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.953;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 11.5, nucl 10.5, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000215301 (
NM_175736
)
(Formin-like protein 3 isoform 1.)
genome : 50,031,724 - 50,101,197 (69,474)
query : 1 - 11,192 (11,192/11,192)
26 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.953;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 11.5, nucl 10.5, mito 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000319529 (
NM_198900
)
(Formin-like protein 3 isoform 2.)
genome : 50,031,724 - 50,101,197 (69,474)
query : 1 - 11,039 (11,039/11,039)
25 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.953;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto_nucl 10, nucl 9.5, cyto 9.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000664388 (
ENST00000550668
)
(Conserved hypothetical protein.)
genome : 50,031,725 - 50,032,926 (1,202)
query : 1 - 720 (720/720)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 25, extr 3, nucl 2, extr_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000020729
(
AK095874
)
(Conserved hypothetical protein.)
genome : 50,031,778 - 50,034,506 (2,729)
query : 1 - 2,730 (2,730/2,730)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 25, extr 3, nucl 2, extr_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0219749
HIT000663409 (
ENST00000549547
)
(FF domain containing protein.)
genome : 50,035,689 - 50,037,697 (2,009)
query : 5 - 697 (693/697)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 12, nucl 4, mito 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219749)
HIX0219749
HIT000660848 (
ENST00000546626
)
(FF domain containing protein.)
genome : 50,035,729 - 50,037,028 (1,300)
query : 1 - 630 (630/630)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 13, plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219749)
HIX0219749
HIT000664911 (
ENST00000551269
)
(Conserved hypothetical protein.)
genome : 50,036,418 - 50,037,594 (1,177)
query : 1 - 923 (923/923)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, extr 11, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219749)
HIX0010610
HIT000334317
(
BC090955
)
(Formin-like protein 3 isoform 1.)
genome : 50,038,716 - 50,055,822 (17,107)
query : 1 - 3,703 (3,703/3,856)
23 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.953;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010472 : Formin, FH3 domain
IPR010473 : Formin, GTPase-binding domain
IPR014768 : Formin, GTPase-binding and FH3 domain
IPR015425 : Formin, FH2 domain
IPR027655 : Formin-like protein 3
GO :
0003779 : Molecular Function : actin binding
0007010 : Biological Process : cytoskeleton organization
0008360 : Biological Process : regulation of cell shape
0016043 : Biological Process : cellular component organization
0016477 : Biological Process : cell migration
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 13.6667, cyto 11.5,
cyto_golg 8.33333, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000026232
(
AL162062
)
(Formin-like protein 3 isoform 2.)
genome : 50,038,716 - 50,044,649 (5,934)
query : 1 - 2,270 (2,270/2,368)
11 exons
identity = 0.996
3'(0.998;1.000;1.000;1.000;1.000;0.953;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR015425 : Formin, FH2 domain
IPR027655 : Formin-like protein 3
GO :
0007010 : Biological Process : cytoskeleton organization
0008360 : Biological Process : regulation of cell shape
0016477 : Biological Process : cell migration
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 8, nucl 4, E.R._mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000041830
(
BC033181
)
(Formin-like protein 3 isoform 2.)
genome : 50,038,735 - 50,043,713 (4,979)
query : 14 - 2,081 (2,068/2,139)
10 exons
identity = 0.994
3'(0.998;1.000;1.000;1.000;1.000;0.953;1.000;
1.000;1.000;0.992)5'
coverage = 0.994
InterPro :
IPR015425 : Formin, FH2 domain
IPR027655 : Formin-like protein 3
GO :
0007010 : Biological Process : cytoskeleton organization
0008360 : Biological Process : regulation of cell shape
0016477 : Biological Process : cell migration
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 13.5, nucl 4.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000664228 (
ENST00000550488
)
(Formin-like protein 3; Formin homology 2 domain-containing protein 3; WW domain-binding protein 3; WBP-3;)
genome : 50,038,716 - 50,101,003 (62,288)
query : 1 - 4,118 (4,118/4,118)
27 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.960;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 11.5, nucl 9.5, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000048068
(
AK128195
)
(Formin-like protein 3 isoform 2.)
genome : 50,038,736 - 50,101,176 (62,441)
query : 2 - 4,007 (4,006/4,007)
25 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.953;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010472 : Formin, FH3 domain
IPR010473 : Formin, GTPase-binding domain
IPR014768 : Formin, GTPase-binding and FH3 domain
IPR015425 : Formin, FH2 domain
IPR027655 : Formin-like protein 3
GO :
0003779 : Molecular Function : actin binding
0007010 : Biological Process : cytoskeleton organization
0008360 : Biological Process : regulation of cell shape
0016043 : Biological Process : cellular component organization
0016477 : Biological Process : cell migration
0017048 : Molecular Function : Rho GTPase binding
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto_nucl 10, nucl 9.5, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000308197 (
ENST00000352151
)
(Formin-like protein 3 isoform 2.)
genome : 50,038,736 - 50,101,176 (62,441)
query : 1 - 4,006 (4,006/4,006)
25 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.953;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto_nucl 10, nucl 9.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000047073
(
AK127200
)
(Formin-like protein 3 isoform 2.)
genome : 50,038,736 - 50,046,025 (7,290)
query : 1 - 2,654 (2,654/2,654)
13 exons
identity = 0.995
3'(0.998;1.000;1.000;1.000;0.953;1.000;1.000;
1.000;0.996;1.000;1.000;1.000;0.997)5'
coverage = 1.000
InterPro :
IPR015425 : Formin, FH2 domain
IPR027655 : Formin-like protein 3
GO :
0007010 : Biological Process : cytoskeleton organization
0008360 : Biological Process : regulation of cell shape
0016477 : Biological Process : cell migration
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 14, pero 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000663046 (
ENST00000549137
)
(Formin-like protein 3 isoform 2.)
genome : 50,038,736 - 50,046,025 (7,290)
query : 1 - 2,650 (2,650/2,650)
13 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;0.960;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 14, pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000113711 (
ENST00000293590
)
(Formin-like protein 3; Formin homology 2 domain-containing protein 3; WW domain-binding protein 3; WBP-3;)
genome : 50,040,445 - 50,101,197 (60,753)
query : 1 - 3,321 (3,321/3,321)
26 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.953;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 11.5, nucl 9.5, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000664653 (
ENST00000550970
)
(Formin-like protein 3 isoform 2.)
genome : 50,055,518 - 50,062,337 (6,820)
query : 1 - 557 (557/557)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, nucl 14.5, cyto 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0010610
HIT000664172 (
ENST00000550424
)
(Formin-like protein 1; Formin-related protein;)
genome : 50,059,942 - 50,101,948 (42,007)
query : 1 - 547 (547/547)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 12.5, nucl 10.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010610)
HIX0219999
HIT000662754 (
ENST00000548809
)
(Conserved hypothetical protein.)
genome : 50,101,508 - 50,146,309 (44,802)
query : 1 - 469 (469/469)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 7.5, extr_plas 7.5, cyto_nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000664813 (
ENST00000551154
)
(Bax inhibitor 1-related family protein.)
genome : 50,101,516 - 50,146,822 (45,307)
query : 1 - 423 (423/423)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 9.83333,
cyto_plas 6.83333, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000662565 (
ENST00000548589
)
(Conserved hypothetical protein.)
genome : 50,101,516 - 50,109,560 (8,045)
query : 1 - 504 (504/504)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, plas 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0220395
HIT000663352 (
ENST00000549485
)
(Non-protein coding transcript.)
genome : 50,103,020 - 50,103,119 (100)
query : 1 - 100 (100/100)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220395)
HIX0219999
HIT000661007 (
ENST00000546796
)
(Bax inhibitor 1-related family protein.)
genome : 50,132,776 - 50,152,266 (19,491)
query : 1 - 556 (556/556)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000663765 (
ENST00000549966
)
(Bax inhibitor 1-related family protein.)
genome : 50,135,327 - 50,152,048 (16,722)
query : 1 - 538 (538/538)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000661913 (
ENST00000547832
)
(Bax inhibitor 1-related family protein.)
genome : 50,135,330 - 50,152,245 (16,916)
query : 1 - 640 (640/640)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000661349 (
ENST00000547187
)
(Bax inhibitor 1-related family protein.)
genome : 50,135,332 - 50,149,539 (14,208)
query : 1 - 669 (669/669)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000666097 (
ENST00000552635
)
(Bax inhibitor 1-related family protein.)
genome : 50,135,340 - 50,152,490 (17,151)
query : 1 - 574 (574/574)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000661115 (
ENST00000546914
)
(Bax inhibitor 1-related family protein.)
genome : 50,135,340 - 50,149,539 (14,200)
query : 1 - 521 (521/521)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000662827 (
ENST00000548894
)
(Non-protein coding transcript.)
genome : 50,135,340 - 50,146,325 (10,986)
query : 1 - 373 (373/373)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000663318 (
ENST00000549445
)
(Bax inhibitor 1-related family protein.)
genome : 50,135,351 - 50,149,539 (14,189)
query : 1 - 759 (759/759)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000664638 (
ENST00000550951
)
(Bax inhibitor 1-related family protein.)
genome : 50,135,354 - 50,146,832 (11,479)
query : 1 - 533 (533/533)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 14.3333, cyto_plas 10.5, extr 6,
nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000661089 (
ENST00000546885
)
(Conserved hypothetical protein.)
genome : 50,135,354 - 50,136,271 (918)
query : 1 - 578 (578/578)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 7.83333, nucl 7.5, cyto 5,
cyto_pero 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000662234 (
ENST00000548201
)
(Bax inhibitor 1-related family protein.)
genome : 50,135,391 - 50,152,221 (16,831)
query : 1 - 582 (582/582)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000662675 (
ENST00000548713
)
(Hypothetical short protein.)
genome : 50,135,391 - 50,146,307 (10,917)
query : 1 - 551 (551/551)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 13, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000664191 (
ENST00000550445
)
(Bax inhibitor 1-related family protein.)
genome : 50,135,605 - 50,152,266 (16,662)
query : 1 - 760 (760/761)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000663040 (
ENST00000549130
)
(Bax inhibitor 1-related family protein.)
genome : 50,137,200 - 50,149,519 (12,320)
query : 1 - 446 (446/446)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, cyto 5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0219999
HIT000666436 (
ENST00000553022
)
(Bax inhibitor 1-related family protein.)
genome : 50,146,821 - 50,152,491 (5,671)
query : 1 - 540 (540/540)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, mito 3, nucl 2, E.R._mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219999)
HIX0220067
HIT000663831 (
ENST00000550040
)
(Conserved hypothetical protein.)
genome : 50,152,587 - 50,155,920 (3,334)
query : 1 - 952 (952/952)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26.5, extr_plas 14, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220067)
HIX0220067
HIT000663341 (
ENST00000549471
)
(Bax inhibitor 1-related family protein.)
genome : 50,152,919 - 50,156,877 (3,959)
query : 1 - 484 (484/484)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, nucl 4, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220067)
HIX0220107
HIT000009879
(
AK026605
)
Representative transcript
(Hypothetical short protein.)
genome : 50,157,081 - 50,158,716 (1,636)
query : 1 - 1,636 (1,636/1,653)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 10, nucl 4, cyto_nucl 4, cyto 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220107)
HIX0220532
HIT000665725 (
ENST00000552208
)
(Conserved hypothetical protein.)
genome : 50,164,743 - 50,164,919 (177)
query : 1 - 177 (177/177)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220532)
HIX0010612
HIT000086978
(
BC007998
)
Representative transcript
(Nck-associated protein 5-like.)
genome : 50,184,935 - 50,189,429 (4,495)
query : 1 - 2,287 (2,287/2,348)
8 exons
identity = 0.995
3'(1.000;0.969;1.000;1.000;1.000;1.000;0.999;
0.991)5'
coverage = 1.000
InterPro :
IPR026163 : Nck-associated protein 5-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC072572
Bos
sp. (Cow) : ENSBTAT00000006377
Oryzias
sp. (Medaka) : ENSORLT00000020700
Pongo
sp. (Orangutan) : ENSPPYT00000005335
Rattus
sp. (Rat) : ENSRNOT00000022937
Tetraodon
sp. (Tetraodon) : GSTENT00010324001
Takifugu
sp. (Fugu) : SINFRUT00000159171
Equus
sp. (Horse) : XM_001915608
Canis
sp. (Dog) : XM_543680
Danio
sp. (Zebrafish) : XM_691806
Macaca
sp. (Macaque) : XR_013809
Pan
sp. (Chimpanzee) : XR_023558
HIX0010612
HIT000093009
(
BC033253
)
(Nck-associated protein 5-like.)
genome : 50,184,935 - 50,190,360 (5,426)
query : 1 - 3,410 (3,410/3,463)
6 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026163 : Nck-associated protein 5-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000090122
(
BC020433
)
(Hypothetical short protein.)
genome : 50,184,933 - 50,185,361 (429)
query : 1 - 429 (429/463)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000366355 (
NM_001037806
)
(Nck-associated protein 5-like; NCKAP5-like;)
genome : 50,184,929 - 50,222,208 (37,280)
query : 1 - 4,900 (4,900/4,918)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000242922
(
AF370366
)
(Nck-associated protein 5-like.)
genome : 50,184,933 - 50,189,152 (4,220)
query : 1 - 2,202 (2,202/2,222)
6 exons
identity = 0.994
3'(0.996;1.000;0.997;0.988;0.988;0.992)5'
coverage = 1.000
InterPro :
IPR026163 : Nck-associated protein 5-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 13, cyto_mito 10, mito 9.5,
cyto 8.5, cyto_pero 6.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000129887 (
ENST00000335999
)
(Nck-associated protein 5-like; NCKAP5-like;)
genome : 50,184,929 - 50,222,208 (37,280)
query : 1 - 4,900 (4,900/4,900)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000001317
(
AB046822
)
(Nck-associated protein 5-like; NCKAP5-like;)
genome : 50,184,929 - 50,190,785 (5,857)
query : 1 - 4,235 (4,235/4,235)
5 exons
identity = 1.000
3'(1.000;1.000;0.988;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000531882 (
ENST00000433948
)
(Nck-associated protein 5-like.)
genome : 50,184,929 - 50,190,785 (5,857)
query : 1 - 4,235 (4,235/4,235)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000018763
(
AK093900
)
(Nck-associated protein 5-like.)
genome : 50,196,051 - 50,199,502 (3,452)
query : 1 - 2,596 (2,596/2,596)
3 exons
identity = 0.999
3'(1.000;1.000;0.998)5'
coverage = 1.000
InterPro :
IPR026163 : Nck-associated protein 5-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 10, cyto_nucl 9, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000581510 (
ENST00000477361
)
(Nck-associated protein 5-like.)
genome : 50,196,051 - 50,199,502 (3,452)
query : 1 - 2,596 (2,596/2,596)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 10, cyto_nucl 9, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000339636
(
BC110599
)
(Nck-associated protein 5-like.)
genome : 50,196,507 - 50,199,173 (2,667)
query : 1 - 1,911 (1,911/1,911)
2 exons
identity = 0.999
3'(1.000;0.999)5'
coverage = 1.000
InterPro :
IPR026163 : Nck-associated protein 5-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 9, cyto_nucl 7.5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000594965 (
ENST00000491441
)
(Nck-associated protein 5-like.)
genome : 50,196,507 - 50,199,173 (2,667)
query : 1 - 1,911 (1,911/1,911)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 9, cyto_nucl 7.5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
HIT000584915 (
ENST00000480927
)
(Hypothetical short protein.)
genome : 50,199,721 - 50,222,533 (22,813)
query : 1 - 533 (533/533)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
HIX0010612
pHIT000021636 ( pHIT000021636 )
(Hypothetical short protein.)
genome : 50,201,623 - 50,222,155 (20,533)
query : 1 - 72 (72/72)
2 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
CAGE tag :
H04BA67C1803
HIX0010612
pHIT000085837 ( pHIT000085837 )
(Hypothetical short protein.)
genome : 50,216,926 - 50,222,155 (5,230)
query : 1 - 108 (108/108)
2 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010612)
CAGE tag :
H04BA67C1803
HIX0010614
HIT000662809 (
ENST00000548872
)
(Pre-miRNA 5'-monophosphate methyltransferase.)
genome : 50,222,325 - 50,234,926 (12,602)
query : 1 - 3,078 (3,078/3,078)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 13, cyto 11, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010614)
HIX0010614
HIT000563541 (
NR_027499
)
(Pre-miRNA 5'-monophosphate methyltransferase.)
genome : 50,222,326 - 50,234,937 (12,612)
query : 1 - 3,088 (3,088/3,109)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 13, cyto 11, extr 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010614)
HIX0010614
HIT000563542 (
NR_027500
)
(Conserved hypothetical protein.)
genome : 50,222,326 - 50,234,937 (12,612)
query : 1 - 1,598 (1,598/1,619)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 13, cyto 11, extr 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010614)
HIX0010614
HIT000563543 (
NR_027501
)
(Pre-miRNA 5'-monophosphate methyltransferase.)
genome : 50,222,326 - 50,234,937 (12,612)
query : 1 - 3,084 (3,084/3,105)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 13, cyto 11, extr 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010614)
HIX0010614
HIT000011756
(
AK055142
)
(Pre-miRNA 5'-monophosphate methyltransferase.)
genome : 50,222,326 - 50,234,235 (11,910)
query : 1 - 2,386 (2,386/2,387)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 14, nucl 8.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010614)
HIX0010614
HIT000664806 (
ENST00000551146
)
(Activating molecule in BECN1-regulated autophagy protein 1 isoform 1.)
genome : 50,222,376 - 50,226,249 (3,874)
query : 1 - 813 (813/813)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, cyto_nucl 12.8333, cyto 9.5, nucl 8,
cyto_pero 6.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010614)
HIX0010614
HIT000088508
(
BC014925
)
Representative transcript
(Pre-miRNA 5'-monophosphate methyltransferase.)
genome : 50,222,395 - 50,234,937 (12,543)
query : 1 - 3,019 (3,019/3,040)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 9, cyto_nucl 6.83333, mito 6, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010614)
HIX0010614
HIT000663034 (
ENST00000549124
)
(Pre-miRNA 5'-monophosphate methyltransferase.)
genome : 50,222,506 - 50,233,987 (11,482)
query : 1 - 468 (468/468)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010614)
HIX0026393
HIT000318447 (
NM_181708
)
(Pre-miRNA 5'-monophosphate methyltransferase; EC=2.1.1.-; BCDIN3 domain-containing protein;)
genome : 50,229,826 - 50,236,912 (7,087)
query : 1 - 3,249 (3,249/3,266)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11, extr 10, nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026393)
HIX0026393
HIT000096482
(
BC040957
)
(Conserved hypothetical protein.)
genome : 50,231,576 - 50,236,878 (5,303)
query : 1 - 1,465 (1,465/1,555)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, extr 7, nucl 3.5, extr_plas 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026393)
HIX0026393
HIT000053918
(
BC053560
)
Representative transcript
(Pre-miRNA 5'-monophosphate methyltransferase; EC=2.1.1.-; BCDIN3 domain-containing protein;)
genome : 50,231,559 - 50,236,875 (5,317)
query : 1 - 1,479 (1,479/1,495)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.1.1.-
InterPro :
IPR010675 : Bicoid-interacting 3
IPR024160 : Bin3-type S-adenosyl-L-methionine binding domain
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0008168 : Molecular Function : methyltransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11, extr 10, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026393)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB171655
Mus
sp. (Mouse) : AK016154
Bos
sp. (Cow) : BC113219
Pongo
sp. (Orangutan) : CR857173
Canis
sp. (Dog) : ENSCAFT00000013318
Equus
sp. (Horse) : ENSECAT00000022160
Oryzias
sp. (Medaka) : ENSORLT00000008561
Tetraodon
sp. (Tetraodon) : GSTENT00033852001
Takifugu
sp. (Fugu) : SINFRUT00000134989
Rattus
sp. (Rat) : XM_001063816
Pan
sp. (Chimpanzee) : XM_001157619
Monodelphis
sp. (Opossum) : XM_001374476
Danio
sp. (Zebrafish) : XM_691701
HIX0026393
HIT000128633 (
ENST00000333924
)
(Pre-miRNA 5'-monophosphate methyltransferase; EC=2.1.1.-; BCDIN3 domain-containing protein;)
genome : 50,231,573 - 50,236,912 (5,340)
query : 1 - 1,502 (1,502/1,502)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11, extr 10, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026393)
HIX0026393
HIT000424991
(
AK292194
)
(Pre-miRNA 5'-monophosphate methyltransferase; EC=2.1.1.-; BCDIN3 domain-containing protein;)
genome : 50,231,620 - 50,236,889 (5,270)
query : 1 - 1,432 (1,432/1,432)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.1.1.-
InterPro :
IPR010675 : Bicoid-interacting 3
IPR024160 : Bin3-type S-adenosyl-L-methionine binding domain
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0008168 : Molecular Function : methyltransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11, extr 10, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026393)
HIX0026393
HIT000664562 (
ENST00000550861
)
(Conserved hypothetical protein.)
genome : 50,232,379 - 50,236,877 (4,499)
query : 1 - 1,129 (1,129/1,129)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, extr 8, cyto_nucl 2, nucl 1.5, cyto 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026393)
HIX0220309
HIT000661979 (
ENST00000547902
)
(Hypothetical short protein.)
genome : 50,254,990 - 50,259,528 (4,539)
query : 1 - 665 (665/665)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220309)
HIX0210684
HIT000564689 (
ENST00000459730
)
(Ribosomal protein L35A family protein.)
genome : 50,256,956 - 50,257,286 (331)
query : 1 - 331 (331/331)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 12, cyto_mito 9.83333,
E.R._mito 6.83333, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210684)
HIX0010615
HIT000055866
(
BX647219
)
(Conserved hypothetical protein.)
genome : 50,260,686 - 50,264,273 (3,588)
query : 1 - 3,323 (3,323/3,340)
2 exons
identity = 0.998
3'(0.998;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 22, extr 5, plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000204075 (
NM_012306
)
(Bax inhibitor 1-related family protein.)
genome : 50,260,679 - 50,297,760 (37,082)
query : 1 - 4,744 (4,744/4,744)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000122496 (
ENST00000320634
)
(Bax inhibitor 1-related family protein.)
genome : 50,260,679 - 50,297,670 (36,992)
query : 1 - 4,654 (4,654/4,654)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000000667
(
AB023167
)
Representative transcript
(Conserved hypothetical protein.)
genome : 50,260,680 - 50,297,657 (36,978)
query : 1 - 4,640 (4,640/4,640)
12 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000422828
(
AK290031
)
(Bax inhibitor 1-related family protein.)
genome : 50,263,786 - 50,297,663 (33,878)
query : 1 - 1,540 (1,540/1,540)
12 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.990)5'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000029310
(
BC000051
)
(Bax inhibitor 1-related family protein.)
genome : 50,264,187 - 50,297,658 (33,472)
query : 1 - 1,134 (1,134/1,198)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000073232
(
AF190461
)
(Bax inhibitor 1-related family protein.)
genome : 50,264,187 - 50,297,666 (33,480)
query : 1 - 1,142 (1,142/1,170)
12 exons
identity = 0.994
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.945;0.985;0.981;1.000;0.991)5'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000015595
(
AK090728
)
(Bax inhibitor 1-related family protein.)
genome : 50,264,183 - 50,296,162 (31,980)
query : 1 - 2,094 (2,094/2,094)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.998)5'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000664588 (
ENST00000550890
)
(Bax inhibitor 1-related family protein.)
genome : 50,264,183 - 50,296,162 (31,980)
query : 1 - 2,094 (2,094/2,094)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000663970 (
ENST00000550195
)
(Bax inhibitor 1-related family protein.)
genome : 50,264,198 - 50,297,652 (33,455)
query : 1 - 1,047 (1,047/1,047)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000666127 (
ENST00000552669
)
(Bax inhibitor 1-related family protein.)
genome : 50,264,314 - 50,294,040 (29,727)
query : 1 - 815 (815/815)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000666292 (
ENST00000552863
)
(Bax inhibitor 1-related family protein.)
genome : 50,264,356 - 50,290,852 (26,497)
query : 1 - 433 (433/433)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0171626
HIT000046757
(
AK126884
)
Representative transcript
(Conserved hypothetical protein.)
genome : 50,268,875 - 50,272,799 (3,925)
query : 1 - 3,448 (3,448/3,448)
2 exons
identity = 0.956
5'(0.958;0.939)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, extr 16, extr_plas 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171626)
HIX0171626
HIT000047474
(
AK127601
)
(Conserved hypothetical protein.)
genome : 50,271,365 - 50,274,457 (3,093)
query : 3 - 1,821 (1,819/1,821)
2 exons
identity = 0.955
5'(0.992;0.941)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171626)
HIX0010615
HIT000664358 (
ENST00000550635
)
(Bax inhibitor 1-related family protein.)
genome : 50,282,891 - 50,298,000 (15,110)
query : 1 - 980 (980/980)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010615
HIT000661949 (
ENST00000547871
)
(Bax inhibitor 1-related family protein.)
genome : 50,284,860 - 50,296,698 (11,839)
query : 1 - 547 (547/547)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11, extr_plas 8.5, mito 7, cyto 6, plas 4,
cyto_nucl 4, E.R._mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010615)
HIX0010616
HIT000563121 (
NR_026948
)
(Conserved hypothetical protein.)
genome : 50,302,667 - 50,305,646 (2,980)
query : 1 - 2,339 (2,339/2,353)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 8, cyto_nucl 6.16667, nucl 5.5,
cyto 5.5, extr_plas 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010616)
HIX0010616
HIT000666211 (
ENST00000552768
)
(Hypothetical short protein.)
genome : 50,302,665 - 50,305,646 (2,982)
query : 1 - 282 (282/282)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010616)
HIX0010616
HIT000665472 (
ENST00000551922
)
(Hypothetical protein.)
genome : 50,302,665 - 50,305,625 (2,961)
query : 1 - 525 (525/525)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 5.66667, cyto 5.5, nucl 4.5,
cyto_pero 4.33333, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010616)
HIX0010616
HIT000661112 (
ENST00000546911
)
(Hypothetical short protein.)
genome : 50,302,665 - 50,305,061 (2,397)
query : 1 - 300 (300/300)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010616)
HIX0010616
HIT000018082
(
AK093215
)
Representative transcript
(Conserved hypothetical protein.)
genome : 50,302,676 - 50,305,640 (2,965)
query : 1 - 2,324 (2,324/2,324)
3 exons
identity = 0.997
3'(0.998;0.983;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, mito 8, cyto_nucl 6.16667, nucl 5.5,
cyto 5.5, cyto_pero 4.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010616)
HIX0010616
HIT000664359 (
ENST00000550636
)
(Conserved hypothetical protein.)
genome : 50,302,676 - 50,305,640 (2,965)
query : 1 - 2,324 (2,324/2,324)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 8, cyto_nucl 6.16667, nucl 5.5,
cyto 5.5, extr_plas 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010616)
HIX0010616
HIT000666090 (
ENST00000552628
)
(Conserved hypothetical protein.)
genome : 50,304,228 - 50,305,641 (1,414)
query : 1 - 891 (891/891)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 3, cyto 2.5, cyto_pero 2.5,
mito_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010616)
HIX0010616
HIT000388292
(
BC121095
)
(Conserved hypothetical protein.)
genome : 50,304,228 - 50,305,070 (843)
query : 1 - 843 (843/843)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 3, cyto 2.5, cyto_pero 2.5,
mito_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010616)
HIX0010616
HIT000388293
(
BC121096
)
(Conserved hypothetical protein.)
genome : 50,304,228 - 50,305,070 (843)
query : 1 - 725 (725/725)
2 exons
identity = 0.997
3'(0.998;0.991)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, mito 8, cyto_nucl 6.16667, nucl 5.5,
cyto 5.5, cyto_pero 4.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010616)
HIX0037059
HIT000093497
(
BC034605
)
Representative transcript
(Hypothetical short protein.)
genome : 50,305,736 - 50,320,121 (14,386)
query : 1 - 3,156 (3,156/3,171)
6 exons
identity = 0.998
5'(1.000;0.998;1.000;1.000;0.992;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, extr 9, cyto 7, mito_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037059)
HIX0037059
HIT000661031 (
ENST00000546821
)
(Hypothetical short protein.)
genome : 50,305,736 - 50,320,122 (14,387)
query : 1 - 3,157 (3,157/3,157)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 11, cyto 8.5, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037059)
HIX0037059
HIT000663565 (
ENST00000549734
)
(Conserved hypothetical protein.)
genome : 50,305,763 - 50,314,301 (8,539)
query : 1 - 617 (617/617)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 9.5, cyto_nucl 9.5, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037059)
HIX0037059
HIT000662023 (
ENST00000547954
)
(Hypothetical short protein.)
genome : 50,318,141 - 50,320,272 (2,132)
query : 1 - 717 (717/717)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037059)
HIX0037059
HIT000661576 (
ENST00000547443
)
(Conserved hypothetical protein.)
genome : 50,318,783 - 50,323,793 (5,011)
query : 1 - 724 (724/724)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037059)
HIX0037059
HIT000665138 (
ENST00000551539
)
(Hypothetical short protein.)
genome : 50,323,181 - 50,324,103 (923)
query : 1 - 525 (525/525)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037059)
HIX0010617
HIT000197521 (
NM_000486
)
(Aquaporin-2; AQP-2; ADH water channel; Aquaporin-CD; AQP-CD; Collecting duct water channel protein; WCH-CD; Water channel protein for renal collecting duct;)
genome : 50,344,524 - 50,352,663 (8,140)
query : 1 - 4,178 (4,178/4,288)
4 exons
identity = 1.000
5'(1.000;0.994;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
HIX0010617
HIT000385070
(
AK225940
)
(Aquaporin-2; AQP-2; ADH water channel; Aquaporin-CD; AQP-CD; Collecting duct water channel protein; WCH-CD; Water channel protein for renal collecting duct;)
genome : 50,344,524 - 50,352,663 (8,140)
query : 1 - 2,043 (2,043/2,096)
6 exons
identity = 0.990
5'(1.000;0.994;1.000;0.927;0.992;1.000)3'
coverage = 1.000
InterPro :
IPR000425 : Major intrinsic protein
IPR022357 : Major intrinsic protein, conserved site
IPR023271 : Aquaporin-like
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R. 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
HIX0010617
HIT000665127 (
ENST00000551526
)
(Aquaporin-2; AQP-2; ADH water channel; Aquaporin-CD; AQP-CD; Collecting duct water channel protein; WCH-CD; Water channel protein for renal collecting duct;)
genome : 50,344,524 - 50,352,156 (7,633)
query : 1 - 1,762 (1,762/1,762)
5 exons
identity = 0.992
5'(1.000;1.000;1.000;0.922;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
HIX0010617
HIT000052701
(
BC042496
)
Representative transcript
(Aquaporin-2; AQP-2; ADH water channel; Aquaporin-CD; AQP-CD; Collecting duct water channel protein; WCH-CD; Water channel protein for renal collecting duct;)
genome : 50,344,529 - 50,352,663 (8,135)
query : 1 - 4,173 (4,173/4,283)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000425 : Major intrinsic protein
IPR022357 : Major intrinsic protein, conserved site
IPR023271 : Aquaporin-like
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK142567
Danio
sp. (Zebrafish) : BC077129
Bos
sp. (Cow) : BC151512
Tetraodon
sp. (Tetraodon) : CR688490
Rattus
sp. (Rat) : D13906
Equus
sp. (Horse) : ENSECAT00000025517
Pongo
sp. (Orangutan) : ENSPPYT00000005339
Takifugu
sp. (Fugu) : SINFRUT00000127844
Macaca
sp. (Macaque) : XM_001110572
Pan
sp. (Chimpanzee) : XM_001157396
Canis
sp. (Dog) : XM_543677
HIX0010617
HIT000102688 (
ENST00000199280
)
(Aquaporin-2; AQP-2; ADH water channel; Aquaporin-CD; AQP-CD; Collecting duct water channel protein; WCH-CD; Water channel protein for renal collecting duct;)
genome : 50,344,529 - 50,352,664 (8,136)
query : 1 - 4,174 (4,174/4,174)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
HIX0010617
HIT000664563 (
ENST00000550862
)
(Aquaporin-2; AQP-2; ADH water channel; Aquaporin-CD; AQP-CD; Collecting duct water channel protein; WCH-CD; Water channel protein for renal collecting duct;)
genome : 50,344,537 - 50,348,493 (3,957)
query : 1 - 809 (809/809)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
HIX0010617
HIT000216468
(
S73196
)
(Aquaporin-2; AQP-2; ADH water channel; Aquaporin-CD; AQP-CD; Collecting duct water channel protein; WCH-CD; Water channel protein for renal collecting duct;)
genome : 50,344,544 - 50,349,404 (4,861)
query : 1 - 899 (899/899)
4 exons
identity = 0.998
5'(1.000;0.994;0.988;1.000)3'
coverage = 1.000
InterPro :
IPR000425 : Major intrinsic protein
IPR022357 : Major intrinsic protein, conserved site
IPR023271 : Aquaporin-like
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
HIX0010617
HIT000216469
(
S73197
)
(Aquaporin-2; AQP-2; ADH water channel; Aquaporin-CD; AQP-CD; Collecting duct water channel protein; WCH-CD; Water channel protein for renal collecting duct;)
genome : 50,344,544 - 50,349,404 (4,861)
query : 1 - 899 (899/899)
4 exons
identity = 0.998
5'(0.998;0.994;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000425 : Major intrinsic protein
IPR022357 : Major intrinsic protein, conserved site
IPR023271 : Aquaporin-like
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
HIX0010617
HIT000268893
(
CR542024
)
(Aquaporin-2; AQP-2; ADH water channel; Aquaporin-CD; AQP-CD; Collecting duct water channel protein; WCH-CD; Water channel protein for renal collecting duct;)
genome : 50,344,614 - 50,349,388 (4,775)
query : 1 - 813 (813/813)
4 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000425 : Major intrinsic protein
IPR022357 : Major intrinsic protein, conserved site
IPR023271 : Aquaporin-like
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
HIX0220071
HIT000664264 (
ENST00000550530
)
(Hypothetical protein.)
genome : 50,345,295 - 50,356,566 (11,272)
query : 1 - 445 (445/445)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 12, cyto_mito 10.5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220071)
HIX0220071
HIT000665875 (
ENST00000552379
)
(Conserved hypothetical protein.)
genome : 50,345,751 - 50,356,705 (10,955)
query : 1 - 592 (592/592)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10.5, cyto_nucl 9.5, extr 9, cyto 7.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220071)
HIX0010617
HIT000666243 (
ENST00000552806
)
(Hypothetical protein.)
genome : 50,349,367 - 50,349,908 (542)
query : 19 - 560 (542/560)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.968
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
HIX0010617
HIT000012438
(
AK055824
)
(Conserved hypothetical protein.)
genome : 50,350,411 - 50,352,662 (2,252)
query : 1 - 2,248 (2,248/2,248)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 13, extr 10, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010617)
HIX0220071
HIT000663987 (
ENST00000550214
)
(Hypothetical short protein.)
genome : 50,352,655 - 50,356,707 (4,053)
query : 1 - 1,031 (1,031/1,031)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, extr 10, mito 9, cyto_nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220071)
HIX0010618
HIT000198591 (
NM_001651
)
(Major intrinsic protein family protein.)
genome : 50,355,279 - 50,359,465 (4,187)
query : 1 - 1,825 (1,825/1,840)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010618)
HIX0010618
HIT000113712 (
ENST00000293599
)
(Major intrinsic protein family protein.)
genome : 50,355,653 - 50,359,464 (3,812)
query : 1 - 1,450 (1,450/1,450)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010618)
HIX0010618
HIT000041743
(
BC032946
)
Representative transcript
(Major intrinsic protein family protein.)
genome : 50,355,734 - 50,359,464 (3,731)
query : 6 - 1,374 (1,369/1,388)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.997)3'
coverage = 0.996
InterPro :
IPR000425 : Major intrinsic protein
IPR022357 : Major intrinsic protein, conserved site
IPR023271 : Aquaporin-like
IPR023276 : Aquaporin 5
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010618)
HIX0010618
HIT000268858
(
CR541989
)
(Major intrinsic protein family protein.)
genome : 50,355,801 - 50,358,960 (3,160)
query : 1 - 798 (798/798)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000425 : Major intrinsic protein
IPR022357 : Major intrinsic protein, conserved site
IPR023271 : Aquaporin-like
IPR023276 : Aquaporin 5
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010618)
HIX0010618
HIT000268891
(
CR542022
)
(Major intrinsic protein family protein.)
genome : 50,355,801 - 50,358,957 (3,157)
query : 1 - 795 (795/795)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000425 : Major intrinsic protein
IPR022357 : Major intrinsic protein, conserved site
IPR023271 : Aquaporin-like
IPR023276 : Aquaporin 5
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010618)
HIX0010618
HIT000666532 (
ENST00000553132
)
(Major intrinsic protein family protein.)
genome : 50,357,358 - 50,358,998 (1,641)
query : 1 - 825 (825/825)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010618)
HIX0010619
HIT000026004
(
AL137716
)
Representative transcript
(Aquaporin-6; AQP-6; Aquaporin-2-like; Kidney-specific aquaporin; hKID;)
genome : 50,360,977 - 50,370,922 (9,946)
query : 1 - 5,129 (5,129/5,178)
7 exons
identity = 0.999
5'(0.995;1.000;1.000;0.999;0.998;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000425 : Major intrinsic protein
IPR022357 : Major intrinsic protein, conserved site
IPR023254 : Aquaporin 6
IPR023271 : Aquaporin-like
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14, mito 7, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010619)
HIX0010619
HIT000593377 (
ENST00000489786
)
(Aquaporin-6; AQP-6; Aquaporin-2-like; Kidney-specific aquaporin; hKID;)
genome : 50,360,977 - 50,370,922 (9,946)
query : 1 - 5,129 (5,129/5,129)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14, mito 7, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010619)
HIX0010619
HIT000261838
(
BC065275
)
(Aquaporin-6; AQP-6; Aquaporin-2-like; Kidney-specific aquaporin; hKID;)
genome : 50,361,020 - 50,370,922 (9,903)
query : 1 - 2,223 (2,223/2,245)
7 exons
identity = 0.998
5'(0.993;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000425 : Major intrinsic protein
IPR023254 : Aquaporin 6
IPR023271 : Aquaporin-like
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10, mito 8.5, E.R._mito 7.5, lyso 4, E.R. 3.5,
plas 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010619)
HIX0010619
HIT000665305 (
ENST00000551733
)
(Aquaporin-6; AQP-6; Aquaporin-2-like; Kidney-specific aquaporin; hKID;)
genome : 50,361,022 - 50,369,478 (8,457)
query : 1 - 849 (849/849)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10, mito 8.5, E.R._mito 7.5, lyso 4, E.R. 3.5,
plas 3, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010619)
HIX0010619
HIT000198592 (
NM_001652
)
(Aquaporin-6; AQP-6; Aquaporin-2-like; Kidney-specific aquaporin; hKID;)
genome : 50,366,620 - 50,370,922 (4,303)
query : 1 - 2,654 (2,654/2,654)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010619)
HIX0010619
HIT000120541 (
ENST00000315520
)
(Aquaporin-6; AQP-6; Aquaporin-2-like; Kidney-specific aquaporin; hKID;)
genome : 50,366,620 - 50,369,666 (3,047)
query : 1 - 1,398 (1,398/1,398)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010619)
HIX0010619
HIT000220058
(
U48408
)
(Aquaporin-6; AQP-6; Aquaporin-2-like; Kidney-specific aquaporin; hKID;)
genome : 50,366,620 - 50,369,620 (3,001)
query : 1 - 1,347 (1,347/1,347)
4 exons
identity = 0.979
5'(0.981;0.987;0.988;0.968)3'
coverage = 1.000
InterPro :
IPR000425 : Major intrinsic protein
IPR022357 : Major intrinsic protein, conserved site
IPR023254 : Aquaporin 6
IPR023271 : Aquaporin-like
GO :
0005215 : Molecular Function : transporter activity
0006810 : Biological Process : transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010619)
HIX0219723
HIT000662890 (
ENST00000548961
)
(Rho GTPase-activating protein domain containing protein.)
genome : 50,370,706 - 50,386,141 (15,436)
query : 1 - 387 (387/387)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 13, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219723)
HIX0219723
HIT000006000
(
AK022726
)
Representative transcript
(Rho GTPase-activating protein domain containing protein.)
genome : 50,382,975 - 50,388,059 (5,085)
query : 85 - 1,866 (1,782/1,866)
6 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.955
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto 2, pero 2, cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219723)
HIX0219994
HIT000661240 (
ENST00000547061
)
(Protein kinase C-like, phorbol ester/diacylglycerol-binding domain containing protein.)
genome : 50,390,852 - 50,396,474 (5,623)
query : 1 - 581 (581/581)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, mito 7, extr_plas 7, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000662336 (
ENST00000548320
)
(Conserved hypothetical protein.)
genome : 50,390,914 - 50,419,276 (28,363)
query : 1 - 554 (554/554)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 10.5, mito 9, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000662573 (
ENST00000548598
)
(Conserved hypothetical protein.)
genome : 50,390,943 - 50,419,244 (28,302)
query : 1 - 582 (582/582)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 11.5, extr 9, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000665811 (
ENST00000552310
)
(Conserved hypothetical protein.)
genome : 50,392,922 - 50,419,231 (26,310)
query : 1 - 932 (932/932)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 17, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000662195 (
ENST00000548158
)
(Conserved hypothetical protein.)
genome : 50,393,093 - 50,398,054 (4,962)
query : 1 - 596 (596/596)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000663926 (
ENST00000550149
)
(Conserved hypothetical protein.)
genome : 50,393,458 - 50,419,260 (25,803)
query : 1 - 570 (570/570)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 6.5, cyto_nucl 6, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000660997 (
ENST00000546786
)
(Conserved hypothetical protein.)
genome : 50,394,954 - 50,419,246 (24,293)
query : 1 - 568 (568/568)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 6, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000660817 (
ENST00000546595
)
(Conserved hypothetical protein.)
genome : 50,394,955 - 50,419,199 (24,245)
query : 1 - 634 (634/634)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000664805 (
ENST00000551145
)
(Conserved hypothetical protein.)
genome : 50,396,031 - 50,419,301 (23,271)
query : 1 - 584 (584/584)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 13.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000662766 (
ENST00000548824
)
(Conserved hypothetical protein.)
genome : 50,396,055 - 50,419,217 (23,163)
query : 1 - 586 (586/586)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, nucl 15.5, cyto 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000662613 (
ENST00000548644
)
(Conserved hypothetical protein.)
genome : 50,398,017 - 50,419,234 (21,218)
query : 1 - 624 (624/624)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 11, extr 7, nucl 5.5, mito 3,
E.R._mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000664904 (
ENST00000551260
)
(Conserved hypothetical protein.)
genome : 50,398,017 - 50,419,218 (21,202)
query : 1 - 555 (555/555)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13, extr 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000660939 (
ENST00000546723
)
(Conserved hypothetical protein.)
genome : 50,398,048 - 50,419,219 (21,172)
query : 1 - 574 (574/574)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, cyto 16, nucl 12,
cyto_plas 10.1667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000666345 (
ENST00000552921
)
(Conserved hypothetical protein.)
genome : 50,398,061 - 50,419,340 (21,280)
query : 1 - 563 (563/563)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19.1667, cyto 18, cyto_plas 11.3333,
nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000662274 (
ENST00000548247
)
(Conserved hypothetical protein.)
genome : 50,399,039 - 50,426,919 (27,881)
query : 1 - 564 (564/564)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000665680 (
ENST00000552157
)
(Conserved hypothetical protein.)
genome : 50,399,039 - 50,419,226 (20,188)
query : 1 - 386 (386/386)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, mito 7, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000660977 (
ENST00000546764
)
(Conserved hypothetical protein.)
genome : 50,399,047 - 50,419,266 (20,220)
query : 1 - 581 (581/581)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 17.6667, cyto_plas 11.8333,
nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000665430 (
ENST00000551876
)
(Conserved hypothetical protein.)
genome : 50,399,074 - 50,410,867 (11,794)
query : 1 - 539 (539/539)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 17, cyto_plas 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000663606 (
ENST00000549777
)
(Conserved hypothetical protein.)
genome : 50,399,077 - 50,419,218 (20,142)
query : 1 - 570 (570/570)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 17.5, cyto_plas 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000664372 (
ENST00000550651
)
(Conserved hypothetical protein.)
genome : 50,399,130 - 50,419,277 (20,148)
query : 1 - 551 (551/551)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26.5, cyto_nucl 16.5, cyto_plas 15.8333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0219994
HIT000665546 (
ENST00000552004
)
(Conserved hypothetical protein.)
genome : 50,399,141 - 50,419,271 (20,131)
query : 1 - 530 (530/530)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.1667, nucl 15, cyto 13,
cyto_plas 8.16667, mito_nucl 8.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219994)
HIX0036785
HIT000104086 (
ENST00000228468
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,451,331 - 50,477,394 (26,064)
query : 1 - 4,072 (4,072/4,072)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14.5, extr_plas 11.5, extr 7.5, mito 3.5, E.R. 3,
cyto_mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000198100 (
NM_001095
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,451,420 - 50,477,405 (25,986)
query : 1 - 3,856 (3,856/3,873)
12 exons
identity = 1.000
5'(1.000;0.997;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14.5, extr_plas 11.5, extr 7.5, mito 3.5,
cyto_mito 3.5, cyto 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000207707 (
NM_020039
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,451,420 - 50,477,405 (25,986)
query : 1 - 3,994 (3,994/4,011)
12 exons
identity = 1.000
5'(1.000;0.997;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14.5, extr_plas 11.5, extr 7.5, mito 3.5, E.R. 3,
cyto_mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000726677 (
NR_046389
)
(Acid-sensing ion channel 1 isoform a.)
genome : 50,451,420 - 50,477,405 (25,986)
query : 1 - 3,938 (3,938/3,955)
13 exons
identity = 1.000
5'(1.000;0.997;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 12.5, extr_plas 12.5, extr 11.5, mito 2.5,
cyto_mito 2.5, E.R. 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000221414
(
U78180
)
(Acid-sensing ion channel 1 isoform a.)
genome : 50,451,487 - 50,477,394 (25,908)
query : 1 - 3,916 (3,916/3,923)
12 exons
identity = 0.998
5'(1.000;0.997;1.000;0.993;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.998
InterPro :
IPR001873 : Na+ channel, amiloride-sensitive
IPR020903 : Na+ channel, amiloride-sensitive, conserved site
GO :
0005272 : Molecular Function : sodium channel activity
0006814 : Biological Process : sodium ion transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14.5, extr_plas 11.5, extr 7.5, mito 3.5, E.R. 3,
cyto_mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000221415
(
U78181
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,451,487 - 50,477,394 (25,908)
query : 1 - 3,778 (3,778/3,785)
12 exons
identity = 0.998
5'(1.000;0.997;1.000;0.993;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.998
InterPro :
IPR001873 : Na+ channel, amiloride-sensitive
IPR004724 : Epithelial sodium channel
IPR020903 : Na+ channel, amiloride-sensitive, conserved site
GO :
0005272 : Molecular Function : sodium channel activity
0006814 : Biological Process : sodium ion transport
0015280 : Molecular Function : ligand-gated sodium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14.5, extr_plas 11.5, extr 7.5, mito 3.5,
cyto_mito 3.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000545900 (
ENST00000447966
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,451,487 - 50,477,394 (25,908)
query : 1 - 3,778 (3,778/3,778)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14.5, extr_plas 11.5, extr 7.5, mito 3.5,
cyto_mito 3.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000091653
(
BC028722
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,451,528 - 50,477,394 (25,867)
query : 1 - 3,817 (3,817/3,830)
13 exons
identity = 0.997
5'(0.977;0.997;1.000;1.000;1.000;1.000;1.000;
1.000;0.987;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR001873 : Na+ channel, amiloride-sensitive
GO :
0005272 : Molecular Function : sodium channel activity
0006814 : Biological Process : sodium ion transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 12.5, extr_plas 12.5, extr 11.5, mito 2.5,
cyto_mito 2.5, E.R. 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000664291 (
ENST00000550558
)
(Acid-sensing ion channel 1 isoform a.)
genome : 50,451,528 - 50,477,394 (25,867)
query : 1 - 3,819 (3,819/3,819)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 12.5, extr_plas 12.5, extr 11.5, mito 2.5,
cyto_mito 2.5, E.R. 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000422807
(
AK290010
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,451,637 - 50,475,775 (24,139)
query : 3 - 2,011 (2,009/2,011)
12 exons
identity = 0.999
5'(1.000;0.997;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.999
InterPro :
IPR001873 : Na+ channel, amiloride-sensitive
IPR004724 : Epithelial sodium channel
IPR020903 : Na+ channel, amiloride-sensitive, conserved site
GO :
0005272 : Molecular Function : sodium channel activity
0006814 : Biological Process : sodium ion transport
0015280 : Molecular Function : ligand-gated sodium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 15.5, extr_plas 12, extr 7.5, mito 3.5,
cyto_mito 3, E.R. 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000391131
(
BC133707
)
Representative transcript
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,452,527 - 50,476,882 (24,356)
query : 2 - 3,061 (3,060/3,061)
11 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001873 : Na+ channel, amiloride-sensitive
IPR004724 : Epithelial sodium channel
IPR020903 : Na+ channel, amiloride-sensitive, conserved site
GO :
0005272 : Molecular Function : sodium channel activity
0006814 : Biological Process : sodium ion transport
0015280 : Molecular Function : ligand-gated sodium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14.5, extr_plas 11.5, extr 7.5, mito 3.5,
cyto_mito 3.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AJ309926
Mus
sp. (Mouse) : BC067025
Danio
sp. (Zebrafish) : ENSDART00000105867
Gallus
sp. (Chicken) : ENSGALT00000035516
Oryzias
sp. (Medaka) : ENSORLT00000008662
Pongo
sp. (Orangutan) : ENSPPYT00000005343
Tetraodon
sp. (Tetraodon) : GSTENT00023664001
Equus
sp. (Horse) : XM_001915905
Danio
sp. (Zebrafish) : XM_001921328
Pan
sp. (Chimpanzee) : XM_509053
Canis
sp. (Dog) : XM_845307
HIX0036785
HIT000484312
(
EU078959
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,452,550 - 50,475,432 (22,883)
query : 1 - 1,587 (1,587/1,587)
11 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001873 : Na+ channel, amiloride-sensitive
IPR004724 : Epithelial sodium channel
IPR020903 : Na+ channel, amiloride-sensitive, conserved site
GO :
0005272 : Molecular Function : sodium channel activity
0006814 : Biological Process : sodium ion transport
0015280 : Molecular Function : ligand-gated sodium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14.5, extr_plas 11.5, extr 7.5, mito 3.5,
cyto_mito 3.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000488584
(
AK293960
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,453,670 - 50,475,723 (22,054)
query : 1 - 1,481 (1,481/1,481)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR001873 : Na+ channel, amiloride-sensitive
IPR004724 : Epithelial sodium channel
IPR020903 : Na+ channel, amiloride-sensitive, conserved site
GO :
0005272 : Molecular Function : sodium channel activity
0006814 : Biological Process : sodium ion transport
0015280 : Molecular Function : ligand-gated sodium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, extr 5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000551261 (
ENST00000453327
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,453,670 - 50,475,723 (22,054)
query : 1 - 1,481 (1,481/1,481)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, extr 5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000429913
(
AK311047
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,464,523 - 50,474,565 (10,043)
query : 1 - 1,223 (1,223/1,223)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001873 : Na+ channel, amiloride-sensitive
IPR020903 : Na+ channel, amiloride-sensitive, conserved site
GO :
0005272 : Molecular Function : sodium channel activity
0006814 : Biological Process : sodium ion transport
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto_nucl 6.5, cyto 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000664853 (
ENST00000551199
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,464,523 - 50,474,565 (10,043)
query : 1 - 1,223 (1,223/1,223)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto_nucl 6.5, cyto 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000665924 (
ENST00000552438
)
(Acid-sensing ion channel 1 isoform c.)
genome : 50,467,358 - 50,477,060 (9,703)
query : 1 - 3,327 (3,327/3,327)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 16, mito 9, cyto_plas 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000723890 (
NM_001256830
)
(Acid-sensing ion channel 1 isoform c.)
genome : 50,467,368 - 50,477,405 (10,038)
query : 1 - 3,662 (3,662/3,679)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 16, mito 9, cyto_plas 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000651185
(
HM991481
)
(Acid-sensing ion channel 1 isoform c.)
genome : 50,467,368 - 50,475,432 (8,065)
query : 1 - 1,689 (1,689/1,689)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001873 : Na+ channel, amiloride-sensitive
IPR004724 : Epithelial sodium channel
IPR020903 : Na+ channel, amiloride-sensitive, conserved site
GO :
0005272 : Molecular Function : sodium channel activity
0006814 : Biological Process : sodium ion transport
0015280 : Molecular Function : ligand-gated sodium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 16, mito 9, cyto_plas 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000663620 (
ENST00000549792
)
(Conserved hypothetical protein.)
genome : 50,470,533 - 50,471,045 (513)
query : 1 - 350 (350/350)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13, cyto 10, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000088220
(
BC013891
)
(Acid-sensing ion channel 1 isoform a.)
genome : 50,471,782 - 50,476,510 (4,729)
query : 19 - 2,113 (2,095/2,182)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 0.991
InterPro :
IPR001873 : Na+ channel, amiloride-sensitive
IPR020903 : Na+ channel, amiloride-sensitive, conserved site
GO :
0005272 : Molecular Function : sodium channel activity
0006814 : Biological Process : sodium ion transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, cyto 12.5, cyto_nucl 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000662363 (
ENST00000548350
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,472,245 - 50,473,725 (1,481)
query : 1 - 560 (560/560)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 12, nucl 11.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0036785
HIT000666095 (
ENST00000552633
)
(Acid-sensing ion channel 1; ASIC1; Amiloride-sensitive cation channel 2, neuronal; Brain sodium channel 2; BNaC2;)
genome : 50,474,281 - 50,476,601 (2,321)
query : 1 - 614 (614/614)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 25.5, cyto_nucl 15.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036785)
HIX0010621
HIT000478357 (
ENST00000394963
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,478,755 - 50,494,495 (15,741)
query : 1 - 3,658 (3,658/3,658)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 9, mito 9, mito_nucl 9, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000199940 (
NM_003076
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,478,983 - 50,494,494 (15,512)
query : 1 - 3,429 (3,429/3,431)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, nucl 6.5, mito 3,
E.R._mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000212671 (
NM_139071
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform b.)
genome : 50,478,983 - 50,494,494 (15,512)
query : 1 - 3,306 (3,306/3,308)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14, nucl 9.5, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000362791 (
ENST00000381513
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform b.)
genome : 50,478,983 - 50,494,425 (15,443)
query : 1 - 3,237 (3,237/3,237)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14, nucl 9.5, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000220957
(
U66617
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2; 60 kDa BRG-1/Brm-associated factor subunit B; BRG1-associated factor 60B; BAF60B;)
genome : 50,479,007 - 50,494,056 (15,050)
query : 6 - 2,841 (2,836/2,841)
12 exons
identity = 0.993
5'(0.991;1.000;1.000;0.992;1.000;0.991;0.971;
1.000;0.990;1.000;1.000;0.991)3'
coverage = 0.998
InterPro :
IPR003121 : SWIB/MDM2 domain
IPR019835 : SWIB domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14, nucl 9.5, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000034314
(
BC009368
)
Representative transcript
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,479,033 - 50,494,424 (15,392)
query : 1 - 3,309 (3,309/3,326)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003121 : SWIB/MDM2 domain
IPR019835 : SWIB domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, nucl 6.5, mito 3,
E.R._mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB173811
Mus
sp. (Mouse) : BC059921
Danio
sp. (Zebrafish) : BC068407
Bos
sp. (Cow) : BC109890
Oryzias
sp. (Medaka) : ENSORLT00000008633
Pongo
sp. (Orangutan) : ENSPPYT00000005344
Takifugu
sp. (Fugu) : SINFRUT00000134998
Rattus
sp. (Rat) : XM_001062988
Pan
sp. (Chimpanzee) : XM_001148448
Equus
sp. (Horse) : XM_001915905
Pan
sp. (Chimpanzee) : XM_509054
Canis
sp. (Dog) : XM_543674
HIX0010621
HIT000665512 (
ENST00000551966
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,479,108 - 50,484,109 (5,002)
query : 1 - 881 (881/881)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 14.5, cyto 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000664218 (
ENST00000550477
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,479,111 - 50,484,349 (5,239)
query : 1 - 911 (911/911)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 15.5, nucl 7.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000425497
(
AK292700
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3; 60 kDa BRG-1/Brm-associated factor subunit C; BRG1-associated factor 60C; BAF60C;)
genome : 50,479,122 - 50,493,163 (14,042)
query : 3 - 1,762 (1,760/1,762)
12 exons
identity = 0.986
5'(0.847;0.989;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR003121 : SWIB/MDM2 domain
IPR019835 : SWIB domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 14.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000488556
(
AK293932
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,479,125 - 50,483,205 (4,081)
query : 1 - 1,584 (1,584/1,584)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000661402 (
ENST00000547247
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,479,125 - 50,483,205 (4,081)
query : 1 - 1,584 (1,584/1,584)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000049788
(
AK130517
)
(Brahma-associated protein of 60 kDa; BRM-associated protein 60;)
genome : 50,479,135 - 50,494,423 (15,289)
query : 1 - 3,098 (3,098/3,098)
13 exons
identity = 0.991
5'(1.000;0.726;0.907;1.000;1.000;0.992;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003121 : SWIB/MDM2 domain
IPR019835 : SWIB domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000661750 (
ENST00000547637
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,479,136 - 50,480,700 (1,565)
query : 1 - 587 (587/587)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, nucl 15, cyto 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000085779
(
BC000063
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,479,164 - 50,494,424 (15,261)
query : 1 - 3,179 (3,179/3,197)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.992;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR003121 : SWIB/MDM2 domain
IPR019835 : SWIB domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000069614
(
AF109733
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,479,195 - 50,494,026 (14,832)
query : 1 - 2,746 (2,746/2,746)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR003121 : SWIB/MDM2 domain
IPR019835 : SWIB domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000665104 (
ENST00000551497
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,479,466 - 50,480,655 (1,190)
query : 1 - 536 (536/536)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 14, mito 4, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000662551 (
ENST00000548573
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,482,018 - 50,493,932 (11,915)
query : 1 - 2,095 (2,095/2,095)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13.6667, cyto_plas 11.6667,
mito 3, pero 3, mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000663161 (
ENST00000549274
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,488,289 - 50,493,627 (5,339)
query : 1 - 611 (611/611)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 7, nucl 6.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000664038 (
ENST00000550280
)
(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1; 60 kDa BRG-1/Brm-associated factor subunit A; BRG1-associated factor 60A; BAF60A; SWI/SNF complex 60 kDa subunit;)
genome : 50,490,442 - 50,492,880 (2,439)
query : 1 - 567 (567/567)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 12, nucl 9, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000664984 (
ENST00000551352
)
(Conserved hypothetical protein.)
genome : 50,492,278 - 50,493,029 (752)
query : 1 - 621 (621/621)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 9.5, cyto_nucl 9, nucl 7.5,
extr_plas 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010621
HIT000663389 (
ENST00000549526
)
(Hypothetical short protein.)
genome : 50,493,213 - 50,494,101 (889)
query : 1 - 401 (401/401)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010621)
HIX0010622
HIT000201981 (
NM_005276
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,602 - 50,505,103 (7,502)
query : 1 - 3,083 (3,083/3,083)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 13.5, mito 3, pero 3, mito_pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000723984 (
NM_001257199
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,602 - 50,505,103 (7,502)
query : 1 - 3,014 (3,014/3,014)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 13, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000115785 (
ENST00000301149
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,602 - 50,505,102 (7,501)
query : 1 - 3,082 (3,082/3,082)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 13.5, mito 3, pero 3, mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000662031 (
ENST00000547964
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,765 - 50,500,170 (2,406)
query : 1 - 573 (573/573)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 14.3333, cyto_plas 12.6667,
nucl 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000049433
(
AK130162
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,791 - 50,503,869 (6,079)
query : 1 - 1,591 (1,591/1,591)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
InterPro :
IPR006109 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal
IPR006168 : Glycerol-3-phosphate dehydrogenase, NAD-dependent
IPR008927 : 6-phosphogluconate dehydrogenase, C-terminal-like
IPR011128 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
IPR013328 : Dehydrogenase, multihelical
IPR016040 : NAD(P)-binding domain
IPR017751 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, eukaryotic
GO :
0004367 : Molecular Function : glycerol-3-phosphate dehydrogenase [NAD+] activity
0005737 : Cellular Component : cytoplasm
0005975 : Biological Process : carbohydrate metabolic process
0006072 : Biological Process : glycerol-3-phosphate metabolic process
0009331 : Cellular Component : glycerol-3-phosphate dehydrogenase complex
0016491 : Molecular Function : oxidoreductase activity
0016616 : Molecular Function : oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
0042803 : Molecular Function : protein homodimerization activity
0046168 : Biological Process : glycerol-3-phosphate catabolic process
0050662 : Molecular Function : coenzyme binding
0051287 : Molecular Function : NAD binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 13, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000662758 (
ENST00000548814
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,791 - 50,503,869 (6,079)
query : 1 - 1,591 (1,591/1,591)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 13, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000661351 (
ENST00000547190
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,791 - 50,501,891 (4,101)
query : 1 - 740 (740/740)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_plas 11.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000665488 (
ENST00000551939
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,791 - 50,499,825 (2,035)
query : 1 - 757 (757/757)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22.5, mito_nucl 13, cyto_nucl 4.83333, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000041457
(
BC032234
)
Representative transcript
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,801 - 50,505,094 (7,294)
query : 1 - 2,875 (2,875/2,909)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
InterPro :
IPR006109 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal
IPR006168 : Glycerol-3-phosphate dehydrogenase, NAD-dependent
IPR008927 : 6-phosphogluconate dehydrogenase, C-terminal-like
IPR011128 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
IPR013328 : Dehydrogenase, multihelical
IPR016040 : NAD(P)-binding domain
IPR017751 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, eukaryotic
GO :
0004367 : Molecular Function : glycerol-3-phosphate dehydrogenase [NAD+] activity
0005737 : Cellular Component : cytoplasm
0005975 : Biological Process : carbohydrate metabolic process
0006072 : Biological Process : glycerol-3-phosphate metabolic process
0009331 : Cellular Component : glycerol-3-phosphate dehydrogenase complex
0016491 : Molecular Function : oxidoreductase activity
0016616 : Molecular Function : oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
0042803 : Molecular Function : protein homodimerization activity
0046168 : Biological Process : glycerol-3-phosphate catabolic process
0050662 : Molecular Function : coenzyme binding
0051287 : Molecular Function : NAD binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 13.5, mito 3, pero 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK137134
Danio
sp. (Zebrafish) : BC053116
Danio
sp. (Zebrafish) : BC067596
Rattus
sp. (Rat) : BC088396
Danio
sp. (Zebrafish) : BC093259
Bos
sp. (Cow) : BT020681
Gallus
sp. (Chicken) : BX935983
Tetraodon
sp. (Tetraodon) : CR695353
Equus
sp. (Horse) : ENSECAT00000001556
Oryzias
sp. (Medaka) : ENSORLT00000008606
Oryzias
sp. (Medaka) : ENSORLT00000015569
Takifugu
sp. (Fugu) : SINFRUT00000168067
Macaca
sp. (Macaque) : XM_001102726
Pan
sp. (Chimpanzee) : XM_001154996
Monodelphis
sp. (Opossum) : XM_001373345
Canis
sp. (Dog) : XM_845287
HIX0010622
HIT000193116
(
L34041
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,808 - 50,503,637 (5,830)
query : 4 - 1,410 (1,407/1,413)
8 exons
identity = 0.993
5'(1.000;0.994;0.993;1.000;1.000;1.000;1.000;
0.981)3'
coverage = 0.996
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
InterPro :
IPR006109 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal
IPR006168 : Glycerol-3-phosphate dehydrogenase, NAD-dependent
IPR008927 : 6-phosphogluconate dehydrogenase, C-terminal-like
IPR011128 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
IPR013328 : Dehydrogenase, multihelical
IPR016040 : NAD(P)-binding domain
IPR017751 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, eukaryotic
GO :
0004367 : Molecular Function : glycerol-3-phosphate dehydrogenase [NAD+] activity
0005737 : Cellular Component : cytoplasm
0005975 : Biological Process : carbohydrate metabolic process
0006072 : Biological Process : glycerol-3-phosphate metabolic process
0009331 : Cellular Component : glycerol-3-phosphate dehydrogenase complex
0016491 : Molecular Function : oxidoreductase activity
0016616 : Molecular Function : oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
0042803 : Molecular Function : protein homodimerization activity
0046168 : Biological Process : glycerol-3-phosphate catabolic process
0050662 : Molecular Function : coenzyme binding
0051287 : Molecular Function : NAD binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 13.5, mito 3, pero 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000490535
(
AK295911
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,805 - 50,499,825 (2,021)
query : 1 - 743 (743/743)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
InterPro :
IPR006168 : Glycerol-3-phosphate dehydrogenase, NAD-dependent
IPR011128 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
IPR016040 : NAD(P)-binding domain
GO :
0004367 : Molecular Function : glycerol-3-phosphate dehydrogenase [NAD+] activity
0005737 : Cellular Component : cytoplasm
0006072 : Biological Process : glycerol-3-phosphate metabolic process
0009331 : Cellular Component : glycerol-3-phosphate dehydrogenase complex
0016616 : Molecular Function : oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
0046168 : Biological Process : glycerol-3-phosphate catabolic process
0051287 : Molecular Function : NAD binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 5.5, cyto_nucl 5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000431382
(
AK312516
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,497,820 - 50,503,302 (5,483)
query : 1 - 1,064 (1,064/1,064)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;0.993;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
InterPro :
IPR006109 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal
IPR006168 : Glycerol-3-phosphate dehydrogenase, NAD-dependent
IPR008927 : 6-phosphogluconate dehydrogenase, C-terminal-like
IPR011128 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
IPR013328 : Dehydrogenase, multihelical
IPR016040 : NAD(P)-binding domain
IPR017751 : Glycerol-3-phosphate dehydrogenase, NAD-dependent, eukaryotic
GO :
0004367 : Molecular Function : glycerol-3-phosphate dehydrogenase [NAD+] activity
0005737 : Cellular Component : cytoplasm
0005975 : Biological Process : carbohydrate metabolic process
0006072 : Biological Process : glycerol-3-phosphate metabolic process
0009331 : Cellular Component : glycerol-3-phosphate dehydrogenase complex
0016491 : Molecular Function : oxidoreductase activity
0016616 : Molecular Function : oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
0042803 : Molecular Function : protein homodimerization activity
0046168 : Biological Process : glycerol-3-phosphate catabolic process
0050662 : Molecular Function : coenzyme binding
0051287 : Molecular Function : NAD binding
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 13.5, mito 3, pero 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000662190 (
ENST00000548152
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic; GPD-C; GPDH-C; EC=1.1.1.8;)
genome : 50,498,130 - 50,501,296 (3,167)
query : 1 - 585 (585/585)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 14.3333, cyto_plas 13.1667,
mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000663948 (
ENST00000550172
)
(Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic isoform 2.)
genome : 50,498,929 - 50,500,699 (1,771)
query : 1 - 794 (794/794)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 1.1.1.8
KEGG pathway :
00564 : Glycerophospholipid metabolism (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 7, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0010622
HIT000089288
(
BC017429
)
(Conserved hypothetical protein.)
genome : 50,501,883 - 50,502,918 (1,036)
query : 3 - 1,038 (1,036/1,066)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 10, mito 7, cyto_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010622)
HIX0201879
HIT000664227 (
ENST00000550487
)
(Cytochrome c oxidase assembly protein COX14;)
genome : 50,505,762 - 50,514,234 (8,473)
query : 1 - 739 (739/739)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, cyto_nucl 7.5, cyto 6.5, nucl 5.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0201879
HIT000210982 (
NM_032901
)
(Cytochrome c oxidase assembly protein COX14;)
genome : 50,505,764 - 50,514,240 (8,477)
query : 1 - 743 (743/754)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, cyto_nucl 7.5, cyto 6.5, nucl 5.5, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0201879
HIT000723958 (
NM_001257133
)
(Cytochrome c oxidase assembly protein COX14;)
genome : 50,505,764 - 50,514,240 (8,477)
query : 1 - 803 (803/814)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, cyto_nucl 7.5, cyto 6.5, nucl 5.5, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0201879
HIT000723959 (
NM_001257134
)
(Cytochrome c oxidase assembly protein COX14;)
genome : 50,505,764 - 50,514,240 (8,477)
query : 1 - 939 (939/950)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 10.5, cyto_mito 10, cyto_nucl 8.5, extr 8,
cyto 7.5, cyto_pero 5.66667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0201879
HIT000121493 (
ENST00000317943
)
(Cytochrome c oxidase assembly protein COX14;)
genome : 50,505,865 - 50,514,234 (8,370)
query : 1 - 708 (708/708)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, cyto_nucl 7.5, cyto 6.5, nucl 5.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0201879
HIT000033488
(
BC007849
)
Representative transcript
(Cytochrome c oxidase assembly protein COX14;)
genome : 50,505,900 - 50,514,234 (8,335)
query : 1 - 601 (601/643)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.998
InterPro :
IPR029208 : Cytochrome c oxidase assembly protein COX14
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, cyto_nucl 7.5, cyto 6.5, nucl 5.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK009401
Rattus
sp. (Rat) : BC084716
Bos
sp. (Cow) : BC114898
Danio
sp. (Zebrafish) : BC134058
Tetraodon
sp. (Tetraodon) : CR717533
Canis
sp. (Dog) : ENSCAFT00000013131
Equus
sp. (Horse) : ENSECAT00000008006
Pongo
sp. (Orangutan) : ENSPPYT00000005347
HIX0201879
HIT000662462 (
ENST00000548468
)
(Conserved hypothetical protein.)
genome : 50,505,980 - 50,559,203 (53,224)
query : 1 - 500 (500/500)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 9.5, cyto_nucl 8.33333, cyto 4,
cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0201879
HIT000431046
(
AK312180
)
(Cytochrome c oxidase assembly protein COX14;)
genome : 50,505,981 - 50,514,000 (8,020)
query : 1 - 286 (286/286)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR029208 : Cytochrome c oxidase assembly protein COX14
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, cyto_nucl 7.5, cyto 6.5, nucl 5.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0201879
HIT000664375 (
ENST00000550654
)
(Cytochrome c oxidase assembly protein COX14;)
genome : 50,505,987 - 50,514,240 (8,254)
query : 1 - 580 (580/580)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, cyto_nucl 7.5, cyto 6.5, nucl 5.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0201879
HIT000662912 (
ENST00000548985
)
(Cytochrome c oxidase assembly protein COX14;)
genome : 50,506,020 - 50,514,234 (8,215)
query : 1 - 677 (677/677)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 10.5, cyto_mito 10, cyto_nucl 8.5, extr 8,
cyto 7.5, cyto_pero 5.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0201879
HIT000666251 (
ENST00000552815
)
(Conserved hypothetical protein.)
genome : 50,506,037 - 50,517,565 (11,529)
query : 1 - 467 (467/467)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0201879
HIT000459981
(
DQ593450
)
(Non-protein coding transcript.)
genome : 50,514,058 - 50,514,087 (30)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
5'(0.967)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201879)
HIX0219748
HIT000010361
(
AK027087
)
(Conserved hypothetical protein.)
genome : 50,523,307 - 50,524,105 (799)
query : 1 - 795 (795/814)
1 exon
identity = 0.991
3'(0.991)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 8.66667, nucl 7.5, cyto 6.5,
cyto_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219748)
HIX0219748
HIT000012354
(
AK055740
)
Representative transcript
(Conserved hypothetical protein.)
genome : 50,523,582 - 50,525,547 (1,966)
query : 1 - 1,960 (1,960/1,960)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219748)
HIX0219938
HIT000427796
(
AK308930
)
Representative transcript
(Conserved hypothetical protein.)
genome : 50,526,862 - 50,528,489 (1,628)
query : 10 - 1,160 (1,151/1,160)
2 exons
identity = 0.998
3'(0.999;0.994)5'
coverage = 0.992
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12.5, extr_plas 10, cyto 9, plas 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219938)
HIX0219938
HIT000665327 (
ENST00000551757
)
(Conserved hypothetical protein.)
genome : 50,526,862 - 50,528,489 (1,628)
query : 1 - 1,151 (1,151/1,151)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 9.5, cyto_nucl 8.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219938)
HIX0220038
HIT000662863 (
ENST00000548930
)
(Conserved hypothetical protein.)
genome : 50,535,863 - 50,538,282 (2,420)
query : 1 - 565 (565/565)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 13.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220038)
HIX0220038
HIT000665005 (
ENST00000551384
)
(Conserved hypothetical protein.)
genome : 50,536,855 - 50,538,154 (1,300)
query : 1 - 553 (553/553)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, extr 11, cyto_mito 10, mito 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220038)
HIX0220038
HIT000663745 (
ENST00000549942
)
(Conserved hypothetical protein.)
genome : 50,537,802 - 50,561,288 (23,487)
query : 1 - 522 (522/522)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 7, nucl 5, cyto_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220038)
HIX0220038
HIT000664596 (
ENST00000550899
)
(Conserved hypothetical protein.)
genome : 50,538,534 - 50,561,152 (22,619)
query : 1 - 578 (578/578)
2 exons
identity = 0.990
3'(0.981;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10, pero 7, cyto 6, nucl 4, mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220038)
HIX0036926
HIT000067551
(
AF088003
)
Representative transcript
(Conserved hypothetical protein.)
genome : 50,551,207 - 50,551,844 (638)
query : 1 - 638 (638/647)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12.5, extr 8, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0036926)
HIX0220038
HIT000661931 (
ENST00000547852
)
(Conserved hypothetical protein.)
genome : 50,559,719 - 50,561,083 (1,365)
query : 1 - 581 (581/581)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 7.5, cyto 7, pero 7, cyto_pero 7, nucl 6,
extr_plas 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220038)
HIX0010625
HIT000002810
(
AK000335
)
(Conserved hypothetical protein.)
genome : 50,569,572 - 50,616,131 (46,560)
query : 1 - 3,253 (3,253/3,277)
8 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000206080 (
NM_016357
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,563 - 50,677,353 (107,791)
query : 1 - 3,738 (3,738/3,745)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000485927 (
NM_001113546
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,563 - 50,677,353 (107,791)
query : 1 - 3,741 (3,741/3,748)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000025507
(
AL136911
)
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,569,572 - 50,677,272 (107,701)
query : 1 - 3,648 (3,648/3,664)
11 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000485928 (
NM_001113547
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,563 - 50,616,488 (46,926)
query : 1 - 3,622 (3,622/3,629)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000723029 (
NM_001243775
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,563 - 50,595,316 (25,754)
query : 1 - 3,349 (3,349/3,356)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000002532
(
AK000057
)
(Conserved hypothetical protein.)
genome : 50,569,572 - 50,594,630 (25,059)
query : 5 - 2,651 (2,647/2,667)
5 exons
identity = 0.992
3'(0.991;1.000;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000339706
(
BC110815
)
Representative transcript
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,569,572 - 50,677,290 (107,719)
query : 1 - 3,666 (3,666/3,681)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK049350
Rattus
sp. (Rat) : AY601122
Canis
sp. (Dog) : ENSCAFT00000013083
Oryzias
sp. (Medaka) : ENSORLT00000020843
Pongo
sp. (Orangutan) : ENSPPYT00000005349
Takifugu
sp. (Fugu) : SINFRUT00000146356
Macaca
sp. (Macaque) : XM_001102909
Pan
sp. (Chimpanzee) : XM_001154478
Monodelphis
sp. (Opossum) : XM_001374642
Equus
sp. (Horse) : XM_001504250
Bos
sp. (Cow) : XM_612416
HIX0010625
HIT000087533
(
BC010664
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,572 - 50,571,677 (2,106)
query : 1 - 2,106 (2,106/2,121)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
InterPro :
IPR028740 : LIM domain and actin-binding protein 1
GO :
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 10, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000002053
(
AF157325
)
(Conserved hypothetical protein.)
genome : 50,569,571 - 50,595,316 (25,746)
query : 1 - 3,341 (3,341/3,348)
5 exons
identity = 0.997
3'(0.997;1.000;1.000;1.000;0.997)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000133877 (
ENST00000341247
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,571 - 50,677,329 (107,759)
query : 1 - 3,706 (3,706/3,706)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000478339 (
ENST00000394943
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,571 - 50,677,289 (107,719)
query : 1 - 3,669 (3,669/3,669)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000666259 (
ENST00000552823
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,571 - 50,616,131 (46,561)
query : 1 - 3,254 (3,254/3,254)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000661908 (
ENST00000547825
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,571 - 50,595,895 (26,325)
query : 1 - 3,920 (3,920/3,920)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000665975 (
ENST00000552491
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,571 - 50,594,630 (25,060)
query : 1 - 2,652 (2,652/2,652)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000073698
(
AF198454
)
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,569,573 - 50,677,272 (107,700)
query : 9 - 3,655 (3,647/3,655)
11 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.986)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000666223 (
ENST00000552783
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,569,573 - 50,616,488 (46,916)
query : 1 - 3,612 (3,612/3,612)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000073699
(
AF198455
)
(LIM domain and actin-binding protein 1 isoform 3.)
genome : 50,569,573 - 50,616,426 (46,854)
query : 1 - 3,550 (3,550/3,550)
8 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000030255
(
BC001247
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,570,692 - 50,616,139 (45,448)
query : 1 - 2,138 (2,138/2,164)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000666335 (
ENST00000552909
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,570,668 - 50,616,139 (45,472)
query : 1 - 2,162 (2,162/2,162)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000002847
(
AK000372
)
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,570,698 - 50,677,263 (106,566)
query : 1 - 2,512 (2,512/2,536)
11 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.967)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000074270
(
AF218025
)
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,570,698 - 50,598,487 (27,790)
query : 20 - 1,737 (1,718/1,754)
6 exons
identity = 0.997
3'(0.999;0.970;0.991;1.000;1.000;1.000)5'
coverage = 0.989
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000006923
(
AK023649
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,570,693 - 50,595,304 (24,612)
query : 1 - 2,207 (2,207/2,207)
5 exons
identity = 1.000
3'(1.000;0.993;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000492390
(
AK297766
)
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,570,699 - 50,616,430 (45,732)
query : 1 - 2,198 (2,198/2,198)
9 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.991;1.000;1.000;
1.000;0.977)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000021027
(
AK096172
)
(Conserved hypothetical protein.)
genome : 50,570,699 - 50,595,895 (25,197)
query : 1 - 2,793 (2,793/2,793)
5 exons
identity = 0.995
3'(0.998;1.000;1.000;1.000;0.990)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000500754
(
BC136763
)
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,570,789 - 50,677,239 (106,451)
query : 1 - 2,398 (2,398/2,398)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000502815
(
BC144403
)
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,570,789 - 50,677,239 (106,451)
query : 1 - 2,457 (2,457/2,457)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;0.983;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028740 : LIM domain and actin-binding protein 1
GO :
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000666172 (
ENST00000552720
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,570,789 - 50,677,239 (106,451)
query : 1 - 2,457 (2,457/2,457)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000502814
(
BC144402
)
(LIM domain and actin-binding protein 1 isoform 4.)
genome : 50,570,794 - 50,677,239 (106,446)
query : 1 - 2,449 (2,449/2,449)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR028740 : LIM domain and actin-binding protein 1
GO :
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000330751
(
AK222971
)
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,570,806 - 50,677,276 (106,471)
query : 1 - 2,418 (2,418/2,418)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.988;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000329447
(
AB209512
)
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,570,821 - 50,677,289 (106,469)
query : 1 - 2,419 (2,419/2,419)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000433313
(
AK314447
)
(LIM domain and actin-binding protein 1; Epithelial protein lost in neoplasm;)
genome : 50,570,847 - 50,677,265 (106,419)
query : 1 - 2,366 (2,366/2,366)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
IPR028740 : LIM domain and actin-binding protein 1
GO :
0008270 : Molecular Function : zinc ion binding
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000662984 (
ENST00000549064
)
(Conserved hypothetical protein.)
genome : 50,571,481 - 50,575,962 (4,482)
query : 1 - 648 (648/648)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000665836 (
ENST00000552338
)
(Conserved hypothetical protein.)
genome : 50,571,557 - 50,589,830 (18,274)
query : 1 - 555 (555/555)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0026524
HIT000055841
(
BX647194
)
Representative transcript
(Conserved hypothetical protein.)
genome : 50,579,364 - 50,584,049 (4,686)
query : 46 - 4,730 (4,685/4,748)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 2, cyto 2, cyto_nucl 2, golg 2,
cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026524)
HIX0220525
HIT000665596 (
ENST00000552061
)
(Conserved hypothetical protein.)
genome : 50,579,363 - 50,584,049 (4,687)
query : 1 - 4,687 (4,687/4,713)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11, nucl 8.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220525)
HIX0010625
HIT000665550 (
ENST00000552008
)
(Conserved hypothetical protein.)
genome : 50,586,235 - 50,614,339 (28,105)
query : 1 - 566 (566/566)
6 exons
identity = 0.982
3'(1.000;1.000;0.952;0.974;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 13.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000665582 (
ENST00000552045
)
(Conserved hypothetical protein.)
genome : 50,589,401 - 50,594,675 (5,275)
query : 1 - 386 (386/386)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 7.5, cyto_nucl 4.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000665095 (
ENST00000551486
)
(Conserved hypothetical protein.)
genome : 50,598,127 - 50,615,948 (17,822)
query : 1 - 587 (587/587)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 15.5, nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000662634 (
ENST00000548666
)
(Ribosomal protein S26e family protein.)
genome : 50,611,445 - 50,612,126 (682)
query : 1 - 354 (354/354)
2 exons
identity = 0.989
3'(1.000;0.973)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000008207
(
AK024933
)
(Conserved hypothetical protein.)
genome : 50,611,707 - 50,614,726 (3,020)
query : 1 - 2,586 (2,586/2,604)
2 exons
identity = 0.997
3'(0.995;0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 23, cyto_nucl 13, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0220485
HIT000664924 (
ENST00000551284
)
(Hypothetical short protein.)
genome : 50,613,387 - 50,623,767 (10,381)
query : 1 - 325 (325/325)
2 exons
identity = 0.988
5'(1.000;0.981)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto_nucl 9, extr 6, E.R._mito 6, nucl 5.5,
cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220485)
HIX0010625
HIT000664335 (
ENST00000550611
)
(Conserved hypothetical protein.)
genome : 50,615,950 - 50,618,264 (2,315)
query : 1 - 543 (543/543)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto 9, extr 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000665267 (
ENST00000551691
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,616,043 - 50,677,267 (61,225)
query : 1 - 583 (583/583)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, nucl 4.5, cyto_nucl 3.5, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000389426
(
BC127805
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,616,093 - 50,677,237 (61,145)
query : 9 - 407 (399/416)
4 exons
identity = 0.995
3'(1.000;0.978;1.000;0.971)5'
coverage = 0.959
InterPro :
IPR028740 : LIM domain and actin-binding protein 1
GO :
0030835 : Biological Process : negative regulation of actin filament depolymerization
0051015 : Molecular Function : actin filament binding
0051017 : Biological Process : actin filament bundle assembly
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, nucl 5.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0010625
HIT000664318 (
ENST00000550592
)
(LIM domain and actin-binding protein 1 family protein.)
genome : 50,616,101 - 50,643,676 (27,576)
query : 1 - 567 (567/567)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, nucl 5.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010625)
HIX0171715
HIT000506756 (
ENST00000408677
)
(Non-protein coding transcript.)
genome : 50,627,925 - 50,627,995 (71)
query : 1 - 71 (71/71)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171715)
HIX0171715
HIT000658541 (
NR_031625
)
(Non-protein coding transcript.)
genome : 50,627,925 - 50,627,995 (71)
query : 1 - 71 (71/71)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171715)
HIX0018810
HIT000021094
(
AK096239
)
Representative transcript
(Conserved hypothetical protein.)
genome : 50,691,304 - 50,699,144 (7,841)
query : 1 - 2,227 (2,227/2,227)
2 exons
identity = 0.988
5'(0.993;0.975)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto_nucl 14.5, cyto 8, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018810)
HIX0018810
HIT000710196 (
ENST00000598429
)
(Conserved hypothetical protein.)
genome : 50,691,350 - 50,691,718 (369)
query : 1 - 369 (369/369)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 16, cyto 7.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018810)
HIX0010627
HIT000642156 (
ENST00000543111
)
(Protein FAM186A;)
genome : 50,720,013 - 50,790,405 (70,393)
query : 1 - 8,200 (8,200/8,200)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.8333, cyto 9,
cyto_mito 5.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010627)
HIX0010627
HIT000501460
(
BC140703
)
Representative transcript
(Protein FAM186A;)
genome : 50,720,013 - 50,744,668 (24,656)
query : 1 - 2,116 (2,116/2,116)
5 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010627)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK133226
Macaca
sp. (Macaque) : ENSMMUT00000006914
Rattus
sp. (Rat) : XM_001064275
Pan
sp. (Chimpanzee) : XM_001153945
HIX0010627
HIT000642141 (
ENST00000543096
)
(Protein FAM186A;)
genome : 50,720,013 - 50,744,668 (24,656)
query : 1 - 2,116 (2,116/2,116)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010627)
HIX0010627
HIT000638796 (
ENST00000539751
)
(Protein FAM186A;)
genome : 50,721,092 - 50,727,886 (6,795)
query : 1 - 463 (463/463)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 8, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010627)
HIX0010627
HIT000561403 (
NM_001145475
)
(Protein FAM186A;)
genome : 50,721,095 - 50,790,405 (69,311)
query : 1 - 7,265 (7,265/7,265)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.8333, cyto 9,
cyto_mito 5.33333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010627)
HIX0010627
HIT000124932 (
ENST00000327337
)
(Protein FAM186A;)
genome : 50,721,095 - 50,790,267 (69,173)
query : 1 - 7,127 (7,127/7,127)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.8333, cyto 9,
cyto_mito 5.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010627)
HIX0010627
HIT000028245
(
AL833333
)
(Protein FAM186A;)
genome : 50,747,427 - 50,790,405 (42,979)
query : 1 - 3,326 (3,326/3,418)
4 exons
identity = 0.998
3'(0.998;0.988;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 17.5, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010627)
HIX0010627
HIT000259405
(
BC054024
)
(Protein FAM186A;)
genome : 50,756,926 - 50,790,392 (33,467)
query : 5 - 543 (539/615)
2 exons
identity = 0.998
3'(0.995;1.000)5'
coverage = 0.914
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25.5, cyto_nucl 14.5, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010627)
HIX0210784
HIT000601996 (
ENST00000498788
)
(Ribosomal protein L26/L24P, eukaryotic/archaeal family protein.)
genome : 50,759,435 - 50,759,869 (435)
query : 1 - 435 (435/435)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11, mito 8, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210784)
HIX0219877
HIT000664257 (
ENST00000550522
)
(Conserved hypothetical protein.)
genome : 50,786,166 - 50,824,334 (38,169)
query : 1 - 567 (567/567)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 12.5, cyto_nucl 11.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000654707 (
NM_001170804
)
(RNA-binding protein Lupus La domain containing protein.)
genome : 50,794,592 - 50,855,272 (60,681)
query : 1 - 1,678 (1,678/1,681)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, nucl 12, mito 2, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000658699 (
NR_033200
)
(RNA-binding protein Lupus La domain containing protein.)
genome : 50,794,592 - 50,855,272 (60,681)
query : 1 - 1,727 (1,727/1,727)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, nucl 17, cyto 13
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000662209 (
ENST00000548174
)
(Conserved hypothetical protein.)
genome : 50,794,672 - 50,822,874 (28,203)
query : 1 - 584 (584/584)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13.5, extr 6, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000662663 (
ENST00000548697
)
(Conserved hypothetical protein.)
genome : 50,794,678 - 50,822,869 (28,192)
query : 1 - 587 (587/587)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, nucl 13.5, cyto 10.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000662917 (
ENST00000548993
)
(RNA-binding protein Lupus La domain containing protein.)
genome : 50,794,679 - 50,831,568 (36,890)
query : 1 - 790 (790/790)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 12, cyto 10, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000260938
(
BC063479
)
(La-related protein 4 isoform e.)
genome : 50,794,691 - 50,855,267 (60,577)
query : 1 - 1,573 (1,573/1,627)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.990;0.997)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006630 : RNA-binding protein Lupus La
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, nucl 12, mito 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000621392 (
ENST00000522085
)
(RNA-binding protein Lupus La domain containing protein.)
genome : 50,794,691 - 50,855,270 (60,580)
query : 1 - 1,577 (1,577/1,577)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, nucl 12, mito 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000665438 (
ENST00000551886
)
(RNA-binding protein Lupus La domain containing protein.)
genome : 50,794,715 - 50,829,382 (34,668)
query : 1 - 586 (586/586)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11, nucl 7.5, extr 6, mito 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000622670 (
ENST00000523389
)
(Conserved hypothetical protein.)
genome : 50,794,733 - 50,822,872 (28,140)
query : 1 - 588 (588/588)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, extr 12, nucl 11, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000082769
(
AY004310
)
Representative transcript
(La-related protein 4 isoform e.)
genome : 50,794,739 - 50,855,269 (60,531)
query : 1 - 1,579 (1,579/1,615)
12 exons
identity = 0.999
5'(0.973;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006630 : RNA-binding protein Lupus La
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, nucl 17, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000617936 (
ENST00000518561
)
(RNA-binding protein Lupus La domain containing protein.)
genome : 50,794,739 - 50,855,270 (60,532)
query : 1 - 1,578 (1,578/1,578)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, nucl 17, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000664022 (
ENST00000550260
)
(RNA-binding protein Lupus La domain containing protein.)
genome : 50,794,784 - 50,831,561 (36,778)
query : 1 - 583 (583/583)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 8, nucl 4, extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000616956 (
ENST00000517559
)
(RNA-binding protein Lupus La domain containing protein.)
genome : 50,794,891 - 50,829,335 (34,445)
query : 1 - 559 (559/559)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, extr 12, nucl 11.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000665930 (
ENST00000552445
)
(Conserved hypothetical protein.)
genome : 50,794,976 - 50,824,348 (29,373)
query : 1 - 722 (722/722)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 11.5, cyto_nucl 10.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219877
HIT000620441 (
ENST00000521120
)
(Conserved hypothetical protein.)
genome : 50,834,262 - 50,848,745 (14,484)
query : 1 - 987 (987/987)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, nucl 15, cyto 12, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219877)
HIX0219794
HIT000092665
(
BC032444
)
Representative transcript
(Conserved hypothetical protein.)
genome : 50,867,196 - 50,871,301 (4,106)
query : 1 - 2,287 (2,287/2,332)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 14.5, cyto 10.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219794)
HIX0219794
HIT000089269
(
BC017395
)
(Conserved hypothetical protein.)
genome : 50,867,887 - 50,870,237 (2,351)
query : 3 - 996 (994/1,025)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, cyto_nucl 8, nucl 7, cyto 7, extr 3, pero 2,
golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219794)
HIX0219794
HIT000070760
(
AF131755
)
(Hypothetical short protein.)
genome : 50,869,644 - 50,871,759 (2,116)
query : 1 - 2,117 (2,117/2,135)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, E.R. 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219794)
HIX0219794
HIT000024081
(
AL050205
)
(Hypothetical short protein.)
genome : 50,871,486 - 50,873,787 (2,302)
query : 1 - 2,303 (2,303/2,312)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 6, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219794)
HIX0219773
HIT000016464
(
AK091597
)
Representative transcript
(DMAP1-binding domain containing protein.)
genome : 50,898,768 - 51,074,043 (175,276)
query : 1 - 2,654 (2,654/2,690)
8 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;0.987;0.992;
0.997)3'
coverage = 1.000
InterPro :
IPR010506 : DMAP1-binding
GO :
0005634 : Cellular Component : nucleus
0008134 : Molecular Function : transcription factor binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219773)
HIX0219773
HIT000663474 (
ENST00000549620
)
(DMAP1-binding domain containing protein.)
genome : 50,898,768 - 51,074,043 (175,276)
query : 1 - 2,654 (2,654/2,676)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219773)
HIX0219773
HIT000265534
(
BC075027
)
(DMAP1-binding domain containing protein.)
genome : 50,898,890 - 51,072,726 (173,837)
query : 1 - 1,215 (1,215/1,215)
8 exons
identit