bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0010314
HIT000642131 (
ENST00000543086
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,374 - 1,600,251 (499,878)
query : 1 - 4,393 (4,393/4,393)
18 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000641347 (
ENST00000542302
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,399 - 1,599,895 (499,497)
query : 1 - 4,323 (4,323/4,323)
20 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000645276 (
ENST00000546231
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,399 - 1,599,895 (499,497)
query : 1 - 4,390 (4,390/4,390)
20 exons
identity = 0.998
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000317987 (
NM_178039
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,404 - 1,605,099 (504,696)
query : 1 - 9,211 (9,211/9,229)
18 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000317988 (
NM_178040
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,404 - 1,605,099 (504,696)
query : 1 - 9,295 (9,295/9,313)
19 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000563690 (
NR_027946
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,404 - 1,605,099 (504,696)
query : 1 - 9,321 (9,321/9,339)
18 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000563691 (
NR_027948
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,404 - 1,605,099 (504,696)
query : 1 - 9,453 (9,453/9,471)
19 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000563692 (
NR_027949
)
(ELKS/Rab6-interacting/CAST family member 1 isoform delta.)
genome : 1,100,404 - 1,605,099 (504,696)
query : 1 - 8,472 (8,472/8,490)
15 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000480502 (
ENST00000397203
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,404 - 1,605,090 (504,687)
query : 1 - 9,451 (9,451/9,451)
19 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000307513 (
ENST00000347735
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,404 - 1,600,733 (500,330)
query : 1 - 4,955 (4,955/4,955)
18 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000058436
(
AB015617
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,416 - 1,600,733 (500,318)
query : 1 - 4,943 (4,943/4,943)
18 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000059698
(
AB053470
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,432 - 1,599,787 (499,356)
query : 1 - 3,871 (3,871/3,871)
18 exons
identity = 0.999
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR019018 : Rab-binding domain FIP-RBD
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000538328 (
ENST00000440394
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,433 - 1,602,698 (502,266)
query : 1 - 7,023 (7,023/7,040)
19 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000059696
(
AB053468
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,433 - 1,599,543 (499,111)
query : 1 - 3,868 (3,868/3,868)
19 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000059697
(
AB053469
)
(ELKS/Rab6-interacting/CAST family member 1 isoform delta.)
genome : 1,100,439 - 1,599,543 (499,105)
query : 1 - 2,881 (2,881/2,881)
15 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000644993 (
ENST00000545948
)
(ELKS/Rab6-interacting/CAST family member 1 isoform delta.)
genome : 1,100,439 - 1,599,543 (499,105)
query : 1 - 2,881 (2,881/2,881)
15 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000314210 (
ENST00000360905
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,464 - 1,601,653 (501,190)
query : 1 - 5,789 (5,789/5,789)
19 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000059699
(
AB053471
)
Representative transcript
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,100,464 - 1,599,787 (499,324)
query : 1 - 3,923 (3,923/3,923)
19 exons
identity = 0.999
5'(0.990;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR019018 : Rab-binding domain FIP-RBD
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AF340028
Rattus
sp. (Rat) : AY174115
Danio
sp. (Zebrafish) : AY916778
Monodelphis
sp. (Opossum) : ENSMODT00000037073
Oryzias
sp. (Medaka) : ENSORLT00000013150
Pongo
sp. (Orangutan) : ENSPPYT00000004903
Pan
sp. (Chimpanzee) : ENSPTRT00000008363
Tetraodon
sp. (Tetraodon) : GSTENT00022753001
Takifugu
sp. (Fugu) : SINFRUT00000162450
Bos
sp. (Cow) : XM_001250211
Equus
sp. (Horse) : XM_001491831
Danio
sp. (Zebrafish) : XM_683604
Canis
sp. (Dog) : XM_862998
Macaca
sp. (Macaque) : XR_011781
HIX0010314
HIT000700868 (
ENST00000589028
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,136,913 - 1,605,090 (468,178)
query : 1 - 9,202 (9,202/9,202)
18 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000435744
(
BC150248
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,136,947 - 1,602,715 (465,769)
query : 22 - 6,807 (6,786/6,830)
18 exons
identity = 0.998
5'(1.000;1.000;1.000;0.999)3'
coverage = 0.994
InterPro :
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000309585 (
ENST00000355446
)
(ELKS/Rab6-interacting/CAST family member 1 isoform delta.)
genome : 1,136,938 - 1,601,653 (464,716)
query : 1 - 5,796 (5,796/5,796)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000390835
(
BC132782
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,136,938 - 1,601,653 (464,716)
query : 1 - 5,741 (5,741/5,741)
18 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR019018 : Rab-binding domain FIP-RBD
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000390837
(
BC132784
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,136,938 - 1,601,653 (464,716)
query : 1 - 5,741 (5,741/5,741)
18 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR019018 : Rab-binding domain FIP-RBD
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000502712
(
BC144287
)
(ELKS/Rab6-interacting/CAST family member 1 isoform delta.)
genome : 1,136,938 - 1,601,653 (464,716)
query : 1 - 5,797 (5,797/5,797)
19 exons
identity = 0.999
5'(1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000000798
(
AB029004
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,136,947 - 1,602,697 (465,751)
query : 1 - 6,768 (6,768/6,768)
18 exons
identity = 0.998
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000488975
(
AK294351
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,192,307 - 1,553,755 (361,449)
query : 2 - 2,268 (2,267/2,268)
15 exons
identity = 0.995
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17.5, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000638016 (
ENST00000538971
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,192,307 - 1,553,755 (361,449)
query : 1 - 2,267 (2,267/2,267)
15 exons
identity = 0.996
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 17, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000017068
(
AK092201
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,299,062 - 1,600,245 (301,184)
query : 1 - 2,071 (2,071/2,071)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000700252 (
ENST00000588412
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,299,062 - 1,600,245 (301,184)
query : 1 - 2,071 (2,071/2,071)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000094831
(
BC037377
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,299,074 - 1,600,246 (301,173)
query : 1 - 1,995 (1,995/2,009)
8 exons
identity = 0.999
5'(1.000;0.995;0.999)3'
coverage = 1.000
InterPro :
IPR019018 : Rab-binding domain FIP-RBD
IPR019323 : Active zone protein ELKS
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000002623
(
AK000148
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,372,198 - 1,600,244 (228,047)
query : 7 - 1,720 (1,714/1,738)
6 exons
identity = 0.999
5'(1.000;0.995;1.000)3'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0020734
HIT000017957
(
AK093090
)
Representative transcript
(Conserved hypothetical protein.)
genome : 1,489,226 - 1,500,668 (11,443)
query : 1 - 2,084 (2,084/2,087)
2 exons
identity = 0.998
3'(0.999)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 8, cyto_nucl 5.83333, cyto_pero 5.33333,
mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020734)
HIX0020734
HIT000612680 (
ENST00000513082
)
(Conserved hypothetical protein.)
genome : 1,489,226 - 1,500,668 (11,443)
query : 1 - 2,088 (2,088/2,088)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 6.83333, nucl 6, cyto 5.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020734)
HIX0010314
HIT000638847 (
ENST00000539802
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,517,358 - 1,554,221 (36,864)
query : 1 - 550 (550/550)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12.5, nucl 9.5, mito 4, extr 3,
pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0037095
HIT000096625
(
BC041344
)
Representative transcript
(Conserved hypothetical protein.)
genome : 1,526,664 - 1,529,031 (2,368)
query : 4 - 2,348 (2,345/2,363)
1 exon
identity = 0.979
5'(0.979)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, mito 4, cyto_nucl 2, E.R._mito 2,
mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037095)
HIX0010314
HIT000614657 (
ENST00000515210
)
(Conserved hypothetical protein.)
genome : 1,539,443 - 1,553,796 (14,354)
query : 1 - 591 (591/591)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 11, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000022032
(
AK097177
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,552,457 - 1,600,245 (47,789)
query : 1 - 2,447 (2,447/2,447)
2 exons
identity = 0.999
5'(1.000;0.998)3'
coverage = 1.000
InterPro :
IPR019018 : Rab-binding domain FIP-RBD
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, cyto 12, nucl 11, cysk 4, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000642196 (
ENST00000543151
)
(ELKS/Rab6-interacting/CAST family member 1; ERC-1; Rab6-interacting protein 2;)
genome : 1,552,457 - 1,600,245 (47,789)
query : 1 - 2,447 (2,447/2,447)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, cyto 12, nucl 11, cysk 4, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000440019
(
DQ573488
)
(Non-protein coding transcript.)
genome : 1,599,662 - 1,599,690 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000265109
(
BC073885
)
(Conserved hypothetical protein.)
genome : 1,601,066 - 1,602,698 (1,633)
query : 1 - 1,633 (1,633/1,648)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto_pero 5.16667, cyto_nucl 4.16667, cyto 4,
pero 4, nucl 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000032195
(
BC005065
)
(Conserved hypothetical protein.)
genome : 1,601,128 - 1,602,698 (1,571)
query : 1 - 1,571 (1,571/1,588)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto_pero 5.16667, cyto_nucl 4.16667, cyto 4,
pero 4, nucl 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0010314
HIT000012926
(
AK056312
)
(Hypothetical short protein.)
genome : 1,603,215 - 1,605,096 (1,882)
query : 1 - 1,882 (1,882/1,882)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, extr 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010314)
HIX0017333
HIT000657823 (
NR_028415
)
(Conserved hypothetical protein.)
genome : 1,609,657 - 1,613,590 (3,934)
query : 1 - 2,244 (2,244/2,244)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 8, cyto 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017333)
HIX0017333
HIT000015483
(
AK090616
)
(Conserved hypothetical protein.)
genome : 1,609,691 - 1,616,484 (6,794)
query : 1 - 2,419 (2,419/2,419)
3 exons
identity = 0.986
5'(0.992;0.984;0.986)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 12.5, cyto_nucl 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017333)
HIX0210808
HIT000615031 (
ENST00000515614
)
(Conserved hypothetical protein.)
genome : 1,609,691 - 1,616,484 (6,794)
query : 1 - 2,417 (2,417/2,417)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10.5, cyto 10, cyto_pero 8,
nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210808)
HIX0017333
HIT000089890
(
BC019241
)
Representative transcript
(Conserved hypothetical protein.)
genome : 1,612,440 - 1,613,590 (1,151)
query : 4 - 1,154 (1,151/1,185)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 8, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017333)
HIX0010319
HIT000638243 (
ENST00000539198
)
(Protein Wnt-5b; Precursor;)
genome : 1,639,057 - 1,748,875 (109,819)
query : 1 - 530 (530/530)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000644856 (
ENST00000545811
)
(Protein Wnt-5b; Precursor;)
genome : 1,639,985 - 1,748,993 (109,009)
query : 1 - 661 (661/661)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 18, extr 4, plas 3, cyto 3, lyso 3, cyto_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0020935
HIT000019223
(
AK094368
)
Representative transcript
(Hypothetical protein.)
genome : 1,665,798 - 1,667,887 (2,090)
query : 1 - 2,075 (2,075/2,075)
1 exon
identity = 0.991
3'(0.991)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 10.8333, extr 10,
cyto_pero 8.66667, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020935)
HIX0010318
HIT000040456
(
BC028132
)
Representative transcript
(F-box/LRR-repeat protein 14; F-box and leucine-rich repeat protein 14;)
genome : 1,675,159 - 1,703,331 (28,173)
query : 1 - 2,109 (2,109/2,164)
2 exons
identity = 0.999
3'(0.998;0.999)5'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR001810 : F-box domain
IPR013101 : Leucine-rich repeat 2
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, extr 7, cyto_pero 6.5, nucl 6, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010318)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AF467462
Mus
sp. (Mouse) : AK036124
Bos
sp. (Cow) : BC118093
Oryzias
sp. (Medaka) : ENSORLT00000017204
Pongo
sp. (Orangutan) : ENSPPYT00000004904
Pan
sp. (Chimpanzee) : ENSPTRT00000008367
Tetraodon
sp. (Tetraodon) : GSTENT00034443001
Takifugu
sp. (Fugu) : SINFRUT00000152677
Macaca
sp. (Macaque) : XM_001117874
Monodelphis
sp. (Opossum) : XM_001366624
Equus
sp. (Horse) : XM_001491675
Rattus
sp. (Rat) : XM_232330
Canis
sp. (Dog) : XM_543882
HIX0010318
HIT000131865 (
ENST00000339235
)
(F-box/LRR-repeat protein 14; F-box and leucine-rich repeat protein 14;)
genome : 1,675,159 - 1,703,331 (28,173)
query : 1 - 2,111 (2,111/2,111)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, extr 7, cyto_pero 6.5, nucl 6, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010318)
HIX0010318
HIT000213709 (
NM_152441
)
(F-box/LRR-repeat protein 14; F-box and leucine-rich repeat protein 14;)
genome : 1,675,159 - 1,703,331 (28,173)
query : 1 - 2,111 (2,111/2,111)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, extr 7, cyto_pero 6.5, nucl 6, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010318)
HIX0010319
HIT000423227
(
AK290430
)
Representative transcript
(Protein Wnt-5b; Precursor;)
genome : 1,683,823 - 1,755,533 (71,711)
query : 3 - 1,439 (1,437/1,439)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR005817 : Wnt
IPR018161 : Wnt protein, conserved site
IPR026537 : Wnt-5b protein
GO :
0005102 : Molecular Function : receptor binding
0005576 : Cellular Component : extracellular region
0007275 : Biological Process : multicellular organismal development
0016055 : Biological Process : Wnt signaling pathway
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
Ortholog candidate ( ->
Evola
)
Oryzias
sp. (Medaka) : AB006579
Rattus
sp. (Rat) : AF481944
Mus
sp. (Mouse) : AK013218
Gallus
sp. (Chicken) : AY753289
Pongo
sp. (Orangutan) : CR926024
Canis
sp. (Dog) : ENSCAFT00000025242
Equus
sp. (Horse) : ENSECAT00000017775
Tetraodon
sp. (Tetraodon) : GSTENT00034446001
Takifugu
sp. (Fugu) : SINFRUT00000152673
Danio
sp. (Zebrafish) : U51268
Macaca
sp. (Macaque) : XM_001117880
Monodelphis
sp. (Opossum) : XM_001373396
Pan
sp. (Chimpanzee) : XM_522589
Bos
sp. (Cow) : XM_584724
HIX0010319
HIT000636076 (
ENST00000537031
)
(Protein Wnt-5b; Precursor;)
genome : 1,683,823 - 1,755,533 (71,711)
query : 1 - 1,437 (1,437/1,437)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010318
HIT000642323 (
ENST00000543278
)
(Non-protein coding transcript.)
genome : 1,696,527 - 1,702,204 (5,678)
query : 1 - 300 (300/300)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010318)
HIX0010318
HIT000061861
(
AF007128
)
(Hypothetical short protein.)
genome : 1,700,529 - 1,702,052 (1,524)
query : 1 - 1,526 (1,526/1,564)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 5, nucl 4.5, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010318)
HIX0010318
HIT000459817
(
DQ593286
)
(Non-protein coding transcript.)
genome : 1,702,078 - 1,702,107 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010318)
HIX0010319
HIT000637899 (
ENST00000538854
)
(Hypothetical short protein.)
genome : 1,725,826 - 1,740,489 (14,664)
query : 1 - 510 (510/510)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000083165
(
AY009399
)
(Protein Wnt-5b; Precursor;)
genome : 1,726,222 - 1,756,377 (30,156)
query : 1 - 2,188 (2,188/2,190)
5 exons
identity = 0.986
5'(1.000;1.000;0.980;0.986;0.985)3'
coverage = 0.999
InterPro :
IPR005817 : Wnt
IPR026537 : Wnt-5b protein
GO :
0005102 : Molecular Function : receptor binding
0005576 : Cellular Component : extracellular region
0007275 : Biological Process : multicellular organismal development
0016055 : Biological Process : Wnt signaling pathway
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000118752 (
ENST00000310594
)
(Protein Wnt-5b; Precursor;)
genome : 1,726,222 - 1,756,377 (30,156)
query : 1 - 2,184 (2,184/2,184)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000209929 (
NM_030775
)
(Protein Wnt-5b; Precursor;)
genome : 1,726,222 - 1,756,377 (30,156)
query : 1 - 2,184 (2,184/2,184)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000480495 (
ENST00000397196
)
(Protein Wnt-5b; Precursor;)
genome : 1,738,363 - 1,756,409 (18,047)
query : 1 - 2,303 (2,303/2,303)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000030623
(
BC001749
)
(Protein Wnt-5b; Precursor;)
genome : 1,738,412 - 1,756,378 (17,967)
query : 1 - 2,224 (2,224/2,252)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR005817 : Wnt
IPR018161 : Wnt protein, conserved site
IPR026537 : Wnt-5b protein
GO :
0005102 : Molecular Function : receptor binding
0005576 : Cellular Component : extracellular region
0007275 : Biological Process : multicellular organismal development
0016055 : Biological Process : Wnt signaling pathway
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000210789 (
NM_032642
)
(Protein Wnt-5b; Precursor;)
genome : 1,738,412 - 1,756,378 (17,967)
query : 1 - 2,223 (2,223/2,251)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000642608 (
ENST00000543563
)
(Protein Wnt-5b; Precursor;)
genome : 1,739,063 - 1,742,072 (3,010)
query : 1 - 716 (716/716)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 10, nucl 9.5, cyto_nucl 7.5, plas 6, E.R. 3,
extr_plas 3, cysk_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000329163
(
AB209228
)
(Protein Wnt-5b; Precursor;)
genome : 1,739,978 - 1,755,099 (15,122)
query : 1 - 1,304 (1,304/1,304)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR005817 : Wnt
IPR018161 : Wnt protein, conserved site
IPR026537 : Wnt-5b protein
GO :
0005102 : Molecular Function : receptor binding
0005576 : Cellular Component : extracellular region
0007275 : Biological Process : multicellular organismal development
0016055 : Biological Process : Wnt signaling pathway
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, extr 7, cyto 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000642116 (
ENST00000543071
)
(Protein Wnt-5b; Precursor;)
genome : 1,739,978 - 1,755,099 (15,122)
query : 1 - 1,304 (1,304/1,304)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, extr 7, cyto 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000641453 (
ENST00000542408
)
(Protein Wnt-5b; Precursor;)
genome : 1,740,481 - 1,755,099 (14,619)
query : 1 - 508 (508/508)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000059832
(
AB060966
)
(Protein Wnt-5b; Precursor;)
genome : 1,740,516 - 1,755,893 (15,378)
query : 1 - 1,560 (1,560/1,560)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR005817 : Wnt
IPR018161 : Wnt protein, conserved site
IPR026537 : Wnt-5b protein
GO :
0005102 : Molecular Function : receptor binding
0005576 : Cellular Component : extracellular region
0007275 : Biological Process : multicellular organismal development
0016055 : Biological Process : Wnt signaling pathway
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000488720
(
AK294096
)
(Protein Wnt-5b; Precursor;)
genome : 1,753,963 - 1,755,699 (1,737)
query : 1 - 1,005 (1,005/1,005)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR005817 : Wnt
IPR018161 : Wnt protein, conserved site
IPR026537 : Wnt-5b protein
GO :
0005102 : Molecular Function : receptor binding
0005576 : Cellular Component : extracellular region
0007275 : Biological Process : multicellular organismal development
0016055 : Biological Process : Wnt signaling pathway
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0010319
HIT000644792 (
ENST00000545747
)
(Protein Wnt-5b; Precursor;)
genome : 1,753,963 - 1,755,699 (1,737)
query : 1 - 1,005 (1,005/1,005)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010319)
HIX0211117
HIT000659784 (
NR_037422
)
(Non-protein coding transcript.)
genome : 1,769,481 - 1,769,546 (66)
query : 1 - 66 (66/66)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211117)
HIX0211117
HIT000689871 (
ENST00000577921
)
(Non-protein coding transcript.)
genome : 1,769,481 - 1,769,546 (66)
query : 1 - 66 (66/66)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211117)
HIX0010320
HIT000636590 (
ENST00000537545
)
(Adiponectin receptor protein 2.)
genome : 1,797,740 - 1,882,090 (84,351)
query : 1 - 484 (484/484)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 15, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000047069
(
AK127196
)
Representative transcript
(Adiponectin receptor protein 2; Progestin and adipoQ receptor family member II;)
genome : 1,800,147 - 1,897,837 (97,691)
query : 1 - 4,012 (4,012/4,012)
9 exons
identity = 0.999
5'(1.000;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 1.000
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ719411
Mus
sp. (Mouse) : AK161404
Rattus
sp. (Rat) : AY724514
Bos
sp. (Cow) : BC110019
Danio
sp. (Zebrafish) : BC117574
Tetraodon
sp. (Tetraodon) : CR636876
Oryzias
sp. (Medaka) : ENSORLT00000017158
Pongo
sp. (Orangutan) : ENSPPYT00000004906
Pan
sp. (Chimpanzee) : ENSPTRT00000045614
Takifugu
sp. (Fugu) : SINFRUT00000135111
Macaca
sp. (Macaque) : XM_001096740
Monodelphis
sp. (Opossum) : XM_001373430
Equus
sp. (Horse) : XM_001491532
Canis
sp. (Dog) : XM_848936
HIX0010320
HIT000048384
(
AK128511
)
(Adiponectin receptor protein 2; Progestin and adipoQ receptor family member II;)
genome : 1,800,193 - 1,897,844 (97,652)
query : 1 - 4,018 (4,018/4,018)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.995;0.990;
0.999)3'
coverage = 1.000
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000311000 (
ENST00000357103
)
(Adiponectin receptor protein 2; Progestin and adipoQ receptor family member II;)
genome : 1,800,193 - 1,897,844 (97,652)
query : 1 - 4,018 (4,018/4,018)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000046984
(
AK127111
)
(Conserved hypothetical protein.)
genome : 1,800,238 - 1,804,658 (4,421)
query : 1 - 3,595 (3,595/3,595)
2 exons
identity = 0.995
5'(0.997;0.993)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000209263 (
NM_024551
)
(Adiponectin receptor protein 2; Progestin and adipoQ receptor family member II;)
genome : 1,800,247 - 1,897,845 (97,599)
query : 1 - 3,965 (3,965/3,982)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000053715
(
BC051858
)
(Adiponectin receptor protein 2; Progestin and adipoQ receptor family member II;)
genome : 1,800,247 - 1,895,427 (95,181)
query : 1 - 1,547 (1,547/1,573)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.997)3'
coverage = 1.000
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000640019 (
ENST00000540974
)
(Hypothetical short protein.)
genome : 1,800,329 - 1,840,222 (39,894)
query : 1 - 480 (480/480)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, nucl 3.5, cyto_nucl 3.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000254534
(
AY424280
)
(Adiponectin receptor protein 2; Progestin and adipoQ receptor family member II;)
genome : 1,863,434 - 1,897,838 (34,405)
query : 1 - 3,837 (3,837/3,851)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0192470
HIT000596527 (
ENST00000493072
)
(KOW domain containing protein.)
genome : 1,866,397 - 1,867,177 (781)
query : 1 - 781 (781/781)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19.1667, cyto 16.5, cyto_plas 10.8333,
nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0192470)
HIX0192470
pHIT000111236 ( pHIT000111236 )
Representative transcript
(Conserved hypothetical protein.)
genome : 1,866,470 - 1,866,763 (294)
query : 1 - 294 (294/294)
1 exon
InterPro :
IPR000876 : Ribosomal protein S4e
IPR005824 : KOW
IPR013845 : Ribosomal protein S4e, central region
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0192470)
CAGE tag :
T12R001B5529
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : XR_011887
Pan
sp. (Chimpanzee) : XR_021235
HIX0010320
HIT000642501 (
ENST00000543456
)
(Adiponectin receptor protein 2.)
genome : 1,869,895 - 1,887,081 (17,187)
query : 1 - 434 (434/434)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, extr 13, cyto_nucl 8.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000634819 (
ENST00000535774
)
(Adiponectin receptor protein 2.)
genome : 1,881,880 - 1,889,684 (7,805)
query : 1 - 488 (488/488)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 16, mito 6, mito_pero 5.5, nucl 5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000643515 (
ENST00000544470
)
(Adiponectin receptor protein 1.)
genome : 1,882,089 - 1,887,773 (5,685)
query : 1 - 793 (793/793)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 5, cyto_nucl 5, mito 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000008359
(
AK025085
)
(Adiponectin receptor protein 2.)
genome : 1,887,018 - 1,897,838 (10,821)
query : 15 - 3,485 (3,471/3,500)
5 exons
identity = 0.998
5'(1.000;0.995;1.000;1.000;0.997)3'
coverage = 0.996
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000636235 (
ENST00000537190
)
(Adiponectin receptor protein 2.)
genome : 1,889,314 - 1,890,133 (820)
query : 1 - 569 (569/569)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0010320
HIT000032073
(
BC004906
)
(Hypothetical short protein.)
genome : 1,896,233 - 1,897,838 (1,606)
query : 1 - 1,606 (1,606/1,638)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 4.5, cyto_mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010320)
HIX0219978
HIT000640489 (
ENST00000541444
)
(Conserved hypothetical protein.)
genome : 1,902,689 - 1,906,826 (4,138)
query : 1 - 676 (676/676)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, cyto 9.5, extr_plas 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219978)
HIX0219978
HIT000642450 (
ENST00000543405
)
(Conserved hypothetical protein.)
genome : 1,904,226 - 1,906,723 (2,498)
query : 1 - 575 (575/575)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto_nucl 3.5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219978)
HIX0219978
HIT000700736 (
ENST00000588896
)
(Conserved hypothetical protein.)
genome : 1,904,280 - 1,905,115 (836)
query : 1 - 550 (550/550)
2 exons
identity = 0.991
3'(1.000;0.983)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 12.3333, extr 9, mito_nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219978)
HIX0219978
HIT000635863 (
ENST00000536818
)
(Conserved hypothetical protein.)
genome : 1,904,502 - 1,906,690 (2,189)
query : 1 - 552 (552/552)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, cyto 13, cyto_nucl 12.5, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219978)
HIX0219982
HIT000701341 (
ENST00000589502
)
(Conserved hypothetical protein.)
genome : 1,908,842 - 1,920,893 (12,052)
query : 1 - 680 (680/680)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219982)
HIX0219982
HIT000640661 (
ENST00000541616
)
(Hypothetical short protein.)
genome : 1,909,173 - 1,909,922 (750)
query : 1 - 576 (576/576)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219982)
HIX0219982
HIT000640376 (
ENST00000541331
)
(Conserved hypothetical protein.)
genome : 1,909,346 - 1,920,927 (11,582)
query : 1 - 498 (498/498)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, nucl 5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219982)
HIX0219982
HIT000639773 (
ENST00000540728
)
(Conserved hypothetical protein.)
genome : 1,909,373 - 1,920,936 (11,564)
query : 1 - 596 (596/596)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 5.5, cyto_nucl 4.83333, cyto 3,
cyto_pero 2.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219982)
HIX0219982
HIT000641385 (
ENST00000542340
)
(Conserved hypothetical protein.)
genome : 1,909,394 - 1,920,964 (11,571)
query : 1 - 558 (558/558)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 6, cyto_nucl 5.33333, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219982)
HIX0010322
HIT000366378 (
NM_001039029
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,433 - 1,945,918 (16,486)
query : 1 - 3,950 (3,950/3,950)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000642863 (
ENST00000543818
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,433 - 1,945,918 (16,486)
query : 1 - 3,986 (3,986/3,986)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000653876 (
NM_001163925
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,433 - 1,945,918 (16,486)
query : 1 - 3,986 (3,986/3,986)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000653877 (
NM_001163926
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,433 - 1,945,918 (16,486)
query : 1 - 3,953 (3,953/3,953)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000644202 (
ENST00000545157
)
(Hypothetical short protein.)
genome : 1,929,649 - 1,936,894 (7,246)
query : 1 - 654 (654/654)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000045275
(
AK125402
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,676 - 1,945,914 (16,239)
query : 1 - 2,770 (2,770/2,770)
2 exons
identity = 0.993
5'(0.997;0.992)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 11, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000642775 (
ENST00000543730
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,676 - 1,945,914 (16,239)
query : 1 - 2,787 (2,787/2,787)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, mito 9, plas 6, extr 3, cysk_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000641574 (
ENST00000542529
)
(Hypothetical short protein.)
genome : 1,929,676 - 1,936,963 (7,288)
query : 1 - 559 (559/559)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000020465
(
AK095610
)
Representative transcript
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,695 - 1,945,918 (16,224)
query : 1 - 3,688 (3,688/3,688)
5 exons
identity = 0.999
5'(0.990;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK045494
Danio
sp. (Zebrafish) : CU468758
Canis
sp. (Dog) : ENSCAFT00000025354
Gallus
sp. (Chicken) : ENSGALT00000021245
Monodelphis
sp. (Opossum) : ENSMODT00000023377
Oryzias
sp. (Medaka) : ENSORLT00000000901
Oryzias
sp. (Medaka) : ENSORLT00000017531
Pongo
sp. (Orangutan) : ENSPPYT00000004908
Pan
sp. (Chimpanzee) : ENSPTRT00000008374
Tetraodon
sp. (Tetraodon) : GSTENT00007785001
Tetraodon
sp. (Tetraodon) : GSTENT00014504001
Takifugu
sp. (Fugu) : SINFRUT00000158569
Takifugu
sp. (Fugu) : SINFRUT00000161237
Rattus
sp. (Rat) : XM_001060528
Macaca
sp. (Macaque) : XM_001097396
Equus
sp. (Horse) : XM_001491391
Bos
sp. (Cow) : XM_608437
HIX0010322
HIT000115282 (
ENST00000299194
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,695 - 1,945,918 (16,224)
query : 1 - 3,688 (3,688/3,688)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000643534 (
ENST00000544489
)
(Conserved hypothetical protein.)
genome : 1,929,738 - 1,940,134 (10,397)
query : 1 - 638 (638/638)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000639423 (
ENST00000540378
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,740 - 1,940,396 (10,657)
query : 1 - 537 (537/537)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, mito 5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000638904 (
ENST00000539859
)
(Hypothetical short protein.)
genome : 1,929,750 - 1,936,982 (7,233)
query : 1 - 540 (540/540)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000503151
(
BC146894
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,797 - 1,945,565 (15,769)
query : 1 - 3,236 (3,236/3,236)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000503167
(
BC146910
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,797 - 1,945,565 (15,769)
query : 1 - 3,236 (3,236/3,236)
5 exons
identity = 0.999
5'(1.000;0.995;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000634086 (
ENST00000535041
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,797 - 1,945,565 (15,769)
query : 1 - 3,236 (3,236/3,236)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000044560
(
AK124687
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,929,862 - 1,945,918 (16,057)
query : 1 - 3,557 (3,557/3,557)
5 exons
identity = 0.999
5'(1.000;1.000;0.993;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000645212 (
ENST00000546167
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,931,248 - 1,940,312 (9,065)
query : 1 - 597 (597/597)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, mito 8, cyto 6, cyto_nucl 5.5,
cyto_pero 5.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000642739 (
ENST00000543694
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,932,402 - 1,940,320 (7,919)
query : 1 - 587 (587/587)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, mito 8, cyto 6, cyto_nucl 5.5,
cyto_pero 5.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000645202 (
ENST00000546157
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,936,729 - 1,940,267 (3,539)
query : 1 - 560 (560/560)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 7.5, mito 7, cyto_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000390044
(
BC129997
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,937,265 - 1,943,926 (6,662)
query : 1 - 1,202 (1,202/1,202)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000435890
(
BC150567
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,937,265 - 1,943,926 (6,662)
query : 1 - 1,202 (1,202/1,202)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000435891
(
BC150568
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,937,265 - 1,943,926 (6,662)
query : 1 - 1,202 (1,202/1,202)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 8, nucl 5, pero 5, cyto_mito 5, E.R. 4, plas 3,
extr 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000046739
(
AK126866
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,941,941 - 1,945,918 (3,978)
query : 1 - 3,978 (3,978/3,978)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, mito 6.5, cyto 5, pero 5, extr_plas 5,
cyto_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0010322
HIT000094669
(
BC036868
)
(Leucine-rich repeat and transmembrane domain-containing protein 2 precursor.)
genome : 1,943,512 - 1,945,915 (2,404)
query : 1 - 2,404 (2,404/2,530)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, cyto 2.5, cyto_mito 2.5, nucl 2, E.R. 2,
mito 1.5, E.R._golg 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010322)
HIX0220209
HIT000638093 (
ENST00000539048
)
(Conserved hypothetical protein.)
genome : 1,953,591 - 1,983,793 (30,203)
query : 1 - 499 (499/499)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 12.5, cyto 12.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220209)
HIX0220623
HIT000702706 (
ENST00000590880
)
(Conserved hypothetical protein.)
genome : 1,993,196 - 1,994,045 (850)
query : 1 - 404 (404/404)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 11, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220623)
HIX0220118
HIT000044702
(
AK124829
)
Representative transcript
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 2,027,014 - 2,029,505 (2,492)
query : 1 - 2,492 (2,492/2,492)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220118)
HIX0171624
HIT000643208 (
ENST00000544163
)
(Hypothetical short protein.)
genome : 2,027,117 - 2,032,033 (4,917)
query : 1 - 315 (315/315)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 14.5, cyto 10.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171624)
HIX0010323
HIT000659639 (
NR_036546
)
(Pollen-specific leucine-rich repeat extensin-like protein 3; AtPEX3; Pollen-specific LRR/EXTENSIN3; Cell wall hydroxyproline-rich glycoprotein; Precursor;)
genome : 2,038,368 - 2,045,742 (7,375)
query : 1 - 2,352 (2,352/2,352)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010323)
HIX0010323
HIT000499649
(
AK316036
)
Representative transcript
(Pollen-specific leucine-rich repeat extensin-like protein 3; AtPEX3; Pollen-specific LRR/EXTENSIN3; Cell wall hydroxyproline-rich glycoprotein; Precursor;)
genome : 2,038,368 - 2,045,740 (7,373)
query : 1 - 2,350 (2,350/2,350)
2 exons
identity = 1.000
3'(1.000;0.992)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010323)
HIX0010323
HIT000515940 (
ENST00000418006
)
(Pollen-specific leucine-rich repeat extensin-like protein 3; AtPEX3; Pollen-specific LRR/EXTENSIN3; Cell wall hydroxyproline-rich glycoprotein; Precursor;)
genome : 2,038,368 - 2,045,740 (7,373)
query : 1 - 2,350 (2,350/2,350)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010323)
HIX0010323
HIT000014516
(
AK057909
)
(Leucine-rich repeat extensin-like protein 3; AtLRX3; LRR/EXTENSIN3; Cell wall hydroxyproline-rich glycoprotein; Precursor;)
genome : 2,038,371 - 2,045,700 (7,330)
query : 1 - 2,289 (2,289/2,289)
2 exons
identity = 0.989
3'(0.989;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010323)
HIX0010323
HIT000490910
(
AK296286
)
(Formin-like protein 20; AtFH20;)
genome : 2,038,717 - 2,045,700 (6,984)
query : 1 - 1,961 (1,961/1,961)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010323)
HIX0219885
HIT000088641
(
BC015368
)
Representative transcript
(Dcp1-like decapping family protein.)
genome : 2,055,227 - 2,074,832 (19,606)
query : 25 - 1,613 (1,589/1,628)
5 exons
identity = 0.998
3'(1.000;1.000;0.997;1.000;1.000)5'
coverage = 0.985
InterPro :
IPR010334 : Dcp1-like decapping
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 10, mito_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219885)
HIX0219885
HIT000639667 (
ENST00000540622
)
(Dcp1-like decapping family protein.)
genome : 2,059,202 - 2,077,076 (17,875)
query : 1 - 1,547 (1,547/1,547)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 17, nucl 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219885)
HIX0219885
HIT000635710 (
ENST00000536665
)
(Conserved hypothetical protein.)
genome : 2,061,943 - 2,075,307 (13,365)
query : 1 - 839 (839/839)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, nucl 9, mito 6, cyto_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219885)
HIX0219792
HIT000642159 (
ENST00000543114
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; MELC-CC; Mouse brain class C; MBC; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,079,952 - 2,224,550 (144,599)
query : 1 - 577 (577/577)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto_nucl 7, nucl 6.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219792
HIT000255724
(
AY604867
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Smooth muscle calcium channel blocker receptor; CACB-receptor; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,080,229 - 2,080,366 (138)
query : 1 - 138 (138/138)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto_nucl 4, nucl 3.5, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219953
HIT000634918 (
ENST00000535873
)
(Dcp1-like decapping family protein.)
genome : 2,101,660 - 2,113,701 (12,042)
query : 1 - 1,193 (1,193/1,193)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 11, mito_pero 9.5, E.R._mito 8, extr 6, cyto 6,
pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219953)
HIX0219953
HIT000495733
(
AK301109
)
Representative transcript
(Dcp1-like decapping family protein.)
genome : 2,101,769 - 2,113,621 (11,853)
query : 6 - 1,009 (1,004/1,009)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR010334 : Dcp1-like decapping
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 11, mito_pero 9.5, E.R._mito 8, extr 6, cyto 6,
pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219953)
HIX0220142
HIT000308724 (
ENST00000354425
)
(Conserved hypothetical protein.)
genome : 2,113,832 - 2,120,558 (6,727)
query : 1 - 629 (629/629)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220142)
HIX0211020
HIT000642029 (
ENST00000542984
)
(Hypothetical short protein.)
genome : 2,127,379 - 2,129,698 (2,320)
query : 1 - 687 (687/687)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211020)
HIX0210987
HIT000640916 (
ENST00000541871
)
(Hypothetical short protein.)
genome : 2,157,518 - 2,158,629 (1,112)
query : 1 - 589 (589/589)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210987)
HIX0219792
HIT000427977
(
AK309111
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,162,451 - 2,229,863 (67,413)
query : 1 - 1,022 (1,022/1,029)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.993
InterPro :
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9.5, plas 7.5, nucl 6.5,
extr_plas 5, mito 2, E.R. 2, E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219792
HIT000080310_02
(
AF465484
)
Representative transcript
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,162,464 - 2,802,027 (639,564)
query : 1 - 8,358 (8,358/8,374)
47 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.997;
1.000;1.000;1.000;1.000;0.992)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB168904
Mus
sp. (Mouse) : AB259049
Danio
sp. (Zebrafish) : AF305689
Rattus
sp. (Rat) : DQ538522
Oryzias
sp. (Medaka) : ENSORLT00000017939
Pongo
sp. (Orangutan) : ENSPPYT00000004912
Pan
sp. (Chimpanzee) : ENSPTRT00000048492
Tetraodon
sp. (Tetraodon) : GSTENT00014510001
Takifugu
sp. (Fugu) : SINFRUT00000141323
Monodelphis
sp. (Opossum) : XM_001373551
Equus
sp. (Horse) : XM_001490657
HIX0219792
HIT000427518
(
AK308652
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,162,492 - 2,229,863 (67,372)
query : 1 - 981 (981/982)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9.5, plas 7.5, nucl 6.5,
extr_plas 5, mito 2, E.R. 2, E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0129989
HIT000448345
(
DQ581814
)
Representative transcript
(Non-protein coding transcript.)
genome : 2,313,144 - 2,313,173 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0129989)
HIX0211059
HIT000726796 (
NR_046578
)
(Hypothetical short protein.)
genome : 2,329,703 - 2,332,647 (2,945)
query : 1 - 737 (737/737)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 7, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211059)
HIX0211059
HIT000643460 (
ENST00000544415
)
(Hypothetical short protein.)
genome : 2,329,703 - 2,332,645 (2,943)
query : 1 - 735 (735/735)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 7, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211059)
HIX0211007
HIT000641725 (
ENST00000542680
)
(Hypothetical short protein.)
genome : 2,378,942 - 2,398,103 (19,162)
query : 1 - 622 (622/622)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 8.16667, nucl 5.5, cyto 5.5,
cyto_pero 4.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211007)
HIX0211007
HIT000726837 (
NR_046769
)
(Hypothetical short protein.)
genome : 2,378,942 - 2,397,911 (18,970)
query : 1 - 430 (430/430)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211007)
HIX0219792
HIT000255498
(
AY562396
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 14.)
genome : 2,613,602 - 2,675,748 (62,147)
query : 1 - 676 (676/676)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12.5, extr_plas 12.5, plas 11.5, E.R. 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219792
HIT000594640 (
ENST00000491104
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 14.)
genome : 2,613,602 - 2,675,748 (62,147)
query : 1 - 669 (669/669)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, plas 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219792
HIT000255497
(
AY562395
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,614,008 - 2,675,748 (61,741)
query : 1 - 631 (631/631)
6 exons
identity = 0.998
5'(1.000;1.000;0.987;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005821 : Ion transport domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219792
HIT000248563
(
AJ536834
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Smooth muscle calcium channel blocker receptor; CACB-receptor; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,622,090 - 2,675,675 (53,586)
query : 1 - 342 (342/342)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, extr 14, cyto_nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219792
HIT000248567
(
AJ537510
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Smooth muscle calcium channel blocker receptor; CACB-receptor; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,622,090 - 2,675,675 (53,586)
query : 1 - 267 (267/267)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 12, cyto_nucl 8.5, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0010326
HIT000004453
(
AK001979
)
Representative transcript
(Conserved hypothetical protein.)
genome : 2,666,541 - 2,668,101 (1,561)
query : 1 - 1,562 (1,562/1,562)
1 exon
identity = 0.994
5'(0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, extr 9, nucl 3.5, cyto_nucl 3.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010326)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : ENSMMUT00000047335
HIX0219792
HIT000569982 (
ENST00000465278
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,692,050 - 2,705,372 (13,323)
query : 1 - 831 (831/831)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0211034
HIT000642604 (
ENST00000543559
)
(Hypothetical short protein.)
genome : 2,712,516 - 2,712,940 (425)
query : 20 - 444 (425/444)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.957
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.5, nucl 10, cyto 9, mito 7, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211034)
HIX0219792
HIT000600124 (
ENST00000496818
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; MELC-CC; Mouse brain class C; MBC; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,717,046 - 2,719,865 (2,820)
query : 1 - 545 (545/545)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, extr 3, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0026499
HIT000050202
(
AK130931
)
Representative transcript
(Conserved hypothetical protein.)
genome : 2,736,166 - 2,737,906 (1,741)
query : 1 - 1,741 (1,741/1,741)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, nucl 5, cyto_nucl 4.5, mito 3, cyto 2,
lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026499)
HIX0219792
HIT000587038 (
ENST00000483136
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; CHCACHA1C; Voltage-gated calcium channel subunit alpha Cav1.2; Fragment;)
genome : 2,750,624 - 2,760,913 (10,290)
query : 1 - 592 (592/592)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, extr 8, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219792
HIT000497322
(
AK302698
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 20.)
genome : 2,750,633 - 2,800,433 (49,801)
query : 8 - 2,840 (2,833/2,840)
17 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.997)3'
coverage = 0.998
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, pero 2, E.R._mito 2, mito 1.5, E.R. 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219792
HIT000023511
(
AK098681
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 3.)
genome : 2,759,486 - 2,761,537 (2,052)
query : 1 - 1,841 (1,841/1,841)
3 exons
identity = 0.996
5'(1.000;0.996;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto_nucl 9.83333, nucl 9, cyto 6.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219792
HIT000595645 (
ENST00000492150
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; CHCACHA1C; Voltage-gated calcium channel subunit alpha Cav1.2; Fragment;)
genome : 2,760,229 - 2,764,359 (4,131)
query : 1 - 819 (819/819)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, plas 6, cyto 5, nucl 4, E.R._mito 3.83333,
cyto_pero 3.83333, mito_pero 3.66667, mito 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0219792
HIT000326724
(
Z26294
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,760,806 - 2,794,996 (34,191)
query : 1 - 1,723 (1,723/1,723)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
1.000;1.000;1.000;0.997;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, pero 6, E.R._mito 3, cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0171655
HIT000347735 (
ENST00000366455
)
(Ribosomal protein S6e family protein.)
genome : 2,769,103 - 2,770,135 (1,033)
query : 1 - 732 (732/732)
2 exons
identity = 0.999
5'(1.000;0.992)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 5.5, cyto_nucl 5.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171655)
HIX0219792
HIT000570612 (
ENST00000465934
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; MELC-CC; Mouse brain class C; MBC; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,775,782 - 2,786,979 (11,198)
query : 1 - 581 (581/581)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, mito_nucl 12.5, cyto 5, nucl 2.5,
cyto_pero 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0211084
HIT000644571 (
ENST00000545526
)
(Conserved hypothetical protein.)
genome : 2,777,666 - 2,781,386 (3,721)
query : 1 - 609 (609/609)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211084)
HIX0010327
HIT000726409 (
NR_045725
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; MELC-CC; Mouse brain class C; MBC; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,785,167 - 2,800,323 (15,157)
query : 1 - 2,230 (2,230/2,230)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, extr 12, cyto_nucl 10.5, cyto 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010327)
HIX0010327
HIT000018613
(
AK093746
)
Representative transcript
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; MELC-CC; Mouse brain class C; MBC; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,785,167 - 2,800,284 (15,118)
query : 1 - 2,190 (2,190/2,190)
4 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, extr 12, cyto_nucl 10.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010327)
HIX0010327
HIT000602477 (
ENST00000501371
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; MELC-CC; Mouse brain class C; MBC; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,785,167 - 2,800,284 (15,118)
query : 1 - 2,191 (2,191/2,191)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, extr 12, cyto_nucl 10.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010327)
HIX0010327
HIT000643562 (
ENST00000544517
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Smooth muscle calcium channel blocker receptor; CACB-receptor; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,799,029 - 2,800,366 (1,338)
query : 1 - 742 (742/742)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, extr 12, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010327)
HIX0010327
HIT000640718 (
ENST00000541673
)
(Non-protein coding transcript.)
genome : 2,799,064 - 2,800,323 (1,260)
query : 1 - 575 (575/575)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010327)
HIX0219792
HIT000065756
(
AF070589
)
(Hypothetical short protein.)
genome : 2,800,248 - 2,802,108 (1,861)
query : 1 - 1,875 (1,875/1,900)
1 exon
identity = 0.990
5'(0.990)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18.5, extr_plas 15, plas 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219792)
HIX0171619
HIT000250739
(
AY129012
)
Representative transcript
(Conserved hypothetical protein.)
genome : 2,802,597 - 2,805,770 (3,174)
query : 1 - 3,173 (3,173/3,190)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 10.5, cyto_nucl 7.5, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171619)
HIX0171619
HIT000016992
(
AK092125
)
(Conserved hypothetical protein.)
genome : 2,803,591 - 2,805,769 (2,179)
query : 1 - 2,179 (2,179/2,179)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 10.5, cyto_nucl 7.5, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171619)
HIX0171619
HIT000334670
(
BC093695
)
(Conserved hypothetical protein.)
genome : 2,804,313 - 2,804,887 (575)
query : 1 - 575 (575/575)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 10.5, cyto_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171619)
HIX0210950
HIT000639138 (
ENST00000540093
)
(Hypothetical short protein.)
genome : 2,851,792 - 2,881,074 (29,283)
query : 1 - 220 (220/220)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, extr 7, nucl 5, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210950)
HIX0210924
HIT000637844 (
ENST00000538799
)
(Conserved hypothetical protein.)
genome : 2,861,763 - 2,862,298 (536)
query : 1 - 536 (536/536)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 15.5, nucl 11.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210924)
HIX0210592
HIT000659115 (
NR_033958
)
(Hypothetical protein.)
genome : 2,870,366 - 2,880,835 (10,470)
query : 1 - 571 (571/571)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 9, cyto 9, nucl 8, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210592)
HIX0210592
HIT000635542 (
ENST00000536497
)
(Hypothetical protein.)
genome : 2,870,366 - 2,879,621 (9,256)
query : 1 - 550 (550/550)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 9, cyto 9, nucl 8, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210592)
HIX0210701
HIT000572857 (
ENST00000468281
)
(Ribosomal protein L25/L23 family protein.)
genome : 2,891,070 - 2,891,537 (468)
query : 1 - 468 (468/468)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 6.5, cyto_nucl 5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0210701)
HIX0010329
HIT000637954 (
ENST00000538909
)
(Chromo shadow domain containing protein.)
genome : 2,896,097 - 2,896,748 (652)
query : 1 - 354 (354/354)
2 exons
identity = 0.994
3'(1.000;0.993)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010329)
HIX0010329
HIT000639473 (
ENST00000540428
)
(Conserved hypothetical protein.)
genome : 2,896,530 - 2,903,461 (6,932)
query : 1 - 423 (423/423)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, cyto_nucl 2.5, extr 2, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010329)
HIX0010329
HIT000021117
(
AK096262
)
Representative transcript
(Conserved hypothetical protein.)
genome : 2,901,746 - 2,904,044 (2,299)
query : 1 - 2,299 (2,299/2,299)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, cyto_nucl 10, nucl 9, cyto 7, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010329)
HIX0010330
HIT000198940 (
NM_002014
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,904,108 - 2,914,586 (10,479)
query : 1 - 3,740 (3,740/3,757)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 16.3333, cyto_pero 11.5, nucl 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000102094 (
ENST00000001008
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,904,119 - 2,913,124 (9,006)
query : 1 - 2,267 (2,267/2,267)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 16.3333, cyto_pero 11.5, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000432784
(
AK313918
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,904,144 - 2,912,424 (8,281)
query : 1 - 1,543 (1,543/1,543)
10 exons
identity = 0.998
5'(0.996;1.000;1.000;0.992;1.000;1.000;1.000;
1.000;0.996;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0005515 : Molecular Function : protein binding
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 16.3333, cyto_pero 11.5, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000030649
(
BC001786
)
Representative transcript
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,904,153 - 2,913,105 (8,953)
query : 1 - 2,214 (2,214/2,234)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0005515 : Molecular Function : protein binding
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 16.3333, cyto_pero 11.5, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169439
Rattus
sp. (Rat) : AF531427
Gallus
sp. (Chicken) : AJ720350
Mus
sp. (Mouse) : AK089972
Danio
sp. (Zebrafish) : BC045387
Bos
sp. (Cow) : BT030531
Oryzias
sp. (Medaka) : ENSORLT00000011260
Pongo
sp. (Orangutan) : ENSPPYT00000004918
Takifugu
sp. (Fugu) : SINFRUT00000129987
Monodelphis
sp. (Opossum) : XM_001366192
Equus
sp. (Horse) : XM_001490767
Pan
sp. (Chimpanzee) : XM_508927
Canis
sp. (Dog) : XM_534923
Pan
sp. (Chimpanzee) : XR_023335
HIX0010330
HIT000196695
(
M88279
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,904,207 - 2,913,101 (8,895)
query : 1 - 2,156 (2,156/2,156)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0005515 : Molecular Function : protein binding
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 16.3333, cyto_pero 11.5, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000033535
(
BC007924
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,904,208 - 2,913,123 (8,916)
query : 1 - 2,177 (2,177/2,196)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0005515 : Molecular Function : protein binding
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 16.3333, cyto_pero 11.5, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000642814 (
ENST00000543769
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,904,235 - 2,906,448 (2,214)
query : 1 - 425 (425/425)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13.5, extr 9, nucl 4.5,
extr_plas 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000639305 (
ENST00000540260
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,904,823 - 2,906,368 (1,546)
query : 1 - 777 (777/777)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, E.R._mito 5.66667, mito 5.5, cyto_golg 5.5,
mito_pero 5.5, nucl 4, plas 3.5, extr_plas 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000637667 (
ENST00000538622
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,905,847 - 2,907,037 (1,191)
query : 1 - 572 (572/572)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 15.5, cyto_plas 13.5, extr 3,
nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0220036
HIT000661915 (
ENST00000547834
)
(Conserved hypothetical protein.)
genome : 2,906,043 - 2,922,068 (16,026)
query : 1 - 411 (411/411)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 16, cyto 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220036)
HIX0220257
HIT000661225 (
ENST00000547042
)
(Conserved hypothetical protein.)
genome : 2,906,302 - 2,913,104 (6,803)
query : 1 - 287 (287/287)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 10, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220257)
HIX0010330
HIT000050415
(
BC002887
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,907,922 - 2,913,105 (5,184)
query : 1 - 1,618 (1,618/1,636)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0005515 : Molecular Function : protein binding
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, mito 6, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000642082 (
ENST00000543037
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,907,933 - 2,909,631 (1,699)
query : 1 - 727 (727/727)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000638226 (
ENST00000539181
)
(Peptidyl-prolyl cis-trans isomerase FKBP4; PPIase FKBP4; EC=5.2.1.8; 51 kDa FK506-binding protein; FKBP51; 52 kDa FK506-binding protein; 52 kDa FKBP; FKBP-52; 59 kDa immunophilin; p59; FK506-binding protein 4; FKBP-4; FKBP59; HSP-binding immunophilin; HBI; Immunophilin FKBP52; Rotamase; Contains: Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed;)
genome : 2,910,344 - 2,910,969 (626)
query : 1 - 370 (370/370)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, extr 11, cyto_nucl 9, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000643411 (
ENST00000544366
)
(Conserved hypothetical protein.)
genome : 2,912,363 - 2,914,576 (2,214)
query : 1 - 287 (287/287)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0010330
HIT000007968
(
AK024694
)
(Hypothetical protein.)
genome : 2,913,203 - 2,913,979 (777)
query : 1 - 777 (777/794)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 5.5, cyto_nucl 5, nucl 3.5, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010330)
HIX0220036
HIT000661883 (
ENST00000547794
)
(Hypothetical short protein.)
genome : 2,914,300 - 2,921,982 (7,683)
query : 1 - 439 (439/439)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 15, extr 8, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220036)
HIX0220036
HIT000665953 (
ENST00000552469
)
(Conserved hypothetical protein.)
genome : 2,914,300 - 2,921,547 (7,248)
query : 1 - 347 (347/347)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 15, extr 8, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220036)
HIX0010332
HIT000207263 (
NM_018463
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,787 - 2,934,237 (12,451)
query : 1 - 2,362 (2,362/2,379)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, mito 10, cyto_nucl 8.33333,
cyto_pero 7.33333, mito_nucl 7.33333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000104104 (
ENST00000228799
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,788 - 2,934,237 (12,450)
query : 1 - 2,361 (2,361/2,361)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, mito 10, cyto_nucl 8.33333,
cyto_pero 7.33333, mito_nucl 7.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000049590
(
AK130319
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,847 - 2,927,826 (5,980)
query : 1 - 1,459 (1,459/1,459)
3 exons
identity = 0.999
5'(1.000;0.999;1.000)3'
coverage = 1.000
InterPro :
IPR013517 : FG-GAP repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 8.5, cyto_nucl 8.33333, cyto 5,
cyto_pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000642074 (
ENST00000543029
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,847 - 2,927,826 (5,980)
query : 1 - 1,459 (1,459/1,459)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 8.5, cyto_nucl 8.33333, cyto 5,
cyto_pero 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000491813
(
AK297189
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,851 - 2,933,668 (11,818)
query : 1 - 1,419 (1,419/1,419)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
0.994;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 5.33333, nucl 5, cyto 3.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000517712 (
ENST00000419778
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,851 - 2,933,668 (11,818)
query : 1 - 1,419 (1,419/1,419)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 7.5, cyto_nucl 6.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000636896 (
ENST00000537851
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,851 - 2,933,668 (11,818)
query : 1 - 1,419 (1,419/1,419)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 7.5, cyto_nucl 6.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000495529
(
AK300905
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,859 - 2,939,770 (17,912)
query : 1 - 1,935 (1,935/1,935)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.990;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013517 : FG-GAP repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 10.5, cyto_nucl 9.83333, nucl 7,
cyto_pero 6.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000639974 (
ENST00000540929
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,859 - 2,939,770 (17,912)
query : 1 - 1,935 (1,935/1,935)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 16, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000641593 (
ENST00000542548
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,859 - 2,939,770 (17,912)
query : 1 - 1,935 (1,935/1,935)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 16, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000423907
(
AK291110
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,859 - 2,933,718 (11,860)
query : 1 - 1,771 (1,771/1,771)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013517 : FG-GAP repeat
IPR017986 : WD40-repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, mito 10, cyto_nucl 8.33333,
cyto_pero 7.33333, mito_nucl 7.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000010755
(
AK027483
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,863 - 2,934,106 (12,244)
query : 1 - 2,155 (2,155/2,155)
12 exons
identity = 0.999
5'(1.000;1.000;0.976;1.000;1.000;1.000;1.000;
1.000;1.000;0.992;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR013517 : FG-GAP repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, mito 10, cyto_nucl 8.33333,
cyto_pero 7.33333, mito_nucl 7.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000032920
(
BC006552
)
Representative transcript
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,902 - 2,933,835 (11,934)
query : 1 - 1,845 (1,845/1,863)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR013517 : FG-GAP repeat
IPR017986 : WD40-repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, mito 10, cyto_nucl 8.33333,
cyto_pero 7.33333, mito_nucl 7.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000036248
(
BC013399
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,902 - 2,933,835 (11,934)
query : 1 - 1,845 (1,845/1,863)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR013517 : FG-GAP repeat
IPR017986 : WD40-repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, mito 10, cyto_nucl 8.33333,
cyto_pero 7.33333, mito_nucl 7.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000255700
(
AY599883
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,927 - 2,927,624 (5,698)
query : 1 - 587 (587/587)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013517 : FG-GAP repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 10.5, cyto_nucl 9.83333, nucl 7,
cyto_pero 6.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000640704 (
ENST00000541659
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,921,927 - 2,927,624 (5,698)
query : 1 - 587 (587/587)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 10.5, cyto_nucl 9.83333, nucl 7,
cyto_pero 6.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000634609 (
ENST00000535564
)
(Hypothetical short protein.)
genome : 2,926,396 - 2,933,838 (7,443)
query : 1 - 449 (449/449)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000636228 (
ENST00000537183
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,928,824 - 2,932,077 (3,254)
query : 1 - 1,088 (1,088/1,088)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12.5, extr 9, cyto_mito 9,
cyto_pero 9, cyto_plas 9, cyto_golg 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000633980 (
ENST00000534935
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,931,960 - 2,934,107 (2,148)
query : 1 - 715 (715/715)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000639707 (
ENST00000540662
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,933,008 - 2,933,642 (635)
query : 1 - 559 (559/559)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, cyto 14, nucl 11, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000637867 (
ENST00000538822
)
(Integrin-alpha FG-GAP repeat-containing protein 2;)
genome : 2,933,042 - 2,940,060 (7,019)
query : 1 - 292 (292/292)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 9, nucl 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010333
HIT000094239
(
BC036063
)
(Nuclear receptor-interacting protein 2.)
genome : 2,934,512 - 2,944,190 (9,679)
query : 1 - 2,752 (2,752/2,770)
6 exons
identity = 0.996
3'(0.995;1.000;1.000;1.000;0.993;1.000)5'
coverage = 0.999
InterPro :
IPR019103 : Aspartic peptidase, DDI1-type
IPR021109 : Aspartic peptidase domain
GO :
0004190 : Molecular Function : aspartic-type endopeptidase activity
0006508 : Biological Process : proteolysis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 10.8333, cyto_pero 7.5, extr 7,
mito 6, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010333)
HIX0010333
HIT000210208 (
NM_031474
)
(Nuclear receptor-interacting protein 2.)
genome : 2,934,514 - 2,944,221 (9,708)
query : 1 - 2,777 (2,777/2,787)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 10.8333, cyto_pero 7.5, extr 7,
mito 6, nucl 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010333)
HIX0010333
HIT000025153
(
AL136557
)
(Nuclear receptor-interacting protein 2.)
genome : 2,934,514 - 2,944,189 (9,676)
query : 1 - 2,744 (2,744/2,754)
6 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019103 : Aspartic peptidase, DDI1-type
IPR021109 : Aspartic peptidase domain
GO :
0004190 : Molecular Function : aspartic-type endopeptidase activity
0006508 : Biological Process : proteolysis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 10.8333, cyto_pero 7.5, extr 7,
mito 6, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010333)
HIX0010333
HIT000130525 (
ENST00000337508
)
(Nuclear receptor-interacting protein 2.)
genome : 2,934,514 - 2,944,190 (9,677)
query : 1 - 2,746 (2,746/2,746)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 10.8333, cyto_pero 7.5, extr 7,
mito 6, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010333)
HIX0010333
HIT000022917
(
AK098063
)
Representative transcript
(Nuclear receptor-interacting protein 2.)
genome : 2,934,515 - 2,944,192 (9,678)
query : 1 - 2,528 (2,528/2,528)
7 exons
identity = 0.999
3'(1.000;0.997;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019103 : Aspartic peptidase, DDI1-type
IPR021109 : Aspartic peptidase domain
GO :
0004190 : Molecular Function : aspartic-type endopeptidase activity
0006508 : Biological Process : proteolysis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 10.8333, cyto_pero 7.5, extr 7,
mito 6, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010333)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK156526
Canis
sp. (Dog) : ENSCAFT00000024801
Pongo
sp. (Orangutan) : ENSPPYT00000004920
Danio
sp. (Zebrafish) : NM_001123515
Takifugu
sp. (Fugu) : SINFRUT00000175847
Macaca
sp. (Macaque) : XM_001117940
Monodelphis
sp. (Opossum) : XM_001372898
Equus
sp. (Horse) : XM_001490793
Pan
sp. (Chimpanzee) : XM_522318
Bos
sp. (Cow) : XM_872665
HIX0010333
HIT000011354
(
AK054740
)
(Conserved hypothetical protein.)
genome : 2,934,515 - 2,936,826 (2,312)
query : 1 - 1,989 (1,989/1,989)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 13, extr 9, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010333)
HIX0010333
HIT000495568
(
AK300944
)
(Nuclear receptor-interacting protein 2.)
genome : 2,935,765 - 2,944,190 (8,426)
query : 1 - 1,323 (1,323/1,323)
8 exons
identity = 0.998
3'(1.000;1.000;0.981;1.000;1.000;1.000;1.000;
0.996)5'
coverage = 1.000
InterPro :
IPR019103 : Aspartic peptidase, DDI1-type
IPR021109 : Aspartic peptidase domain
GO :
0004190 : Molecular Function : aspartic-type endopeptidase activity
0006508 : Biological Process : proteolysis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, cyto_nucl 10.3333, extr 10, cyto_pero 7,
nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010333)
HIX0010333
HIT000390525
(
BC131562
)
(Nuclear receptor-interacting protein 2.)
genome : 2,936,231 - 2,944,178 (7,948)
query : 1 - 1,017 (1,017/1,017)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019103 : Aspartic peptidase, DDI1-type
IPR021109 : Aspartic peptidase domain
GO :
0004190 : Molecular Function : aspartic-type endopeptidase activity
0006508 : Biological Process : proteolysis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 10.8333, cyto_pero 7.5, extr 7,
mito 6, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010333)
HIX0010333
HIT000642035 (
ENST00000542990
)
(Nuclear receptor-interacting protein 2.)
genome : 2,937,116 - 2,944,710 (7,595)
query : 1 - 591 (591/591)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 15, nucl 5.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010333)
HIX0010333
HIT000641431 (
ENST00000542386
)
(Nuclear receptor-interacting protein 2.)
genome : 2,937,512 - 2,944,702 (7,191)
query : 1 - 578 (578/578)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, extr 12, cyto_nucl 12, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010333)
HIX0010332
HIT000665547 (
ENST00000552005
)
(Nuclear receptor-interacting protein 2.)
genome : 2,939,591 - 2,946,158 (6,568)
query : 1 - 709 (709/709)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 8, extr_plas 8, cyto_nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000435276
(
BC141948
)
(Conserved hypothetical protein.)
genome : 2,945,977 - 2,967,484 (21,508)
query : 16 - 622 (607/629)
3 exons
identity = 0.997
5'(0.986;1.000;1.000)3'
coverage = 0.965
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 4, cyto 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000636755 (
ENST00000537710
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,945,977 - 2,968,957 (22,981)
query : 1 - 878 (878/878)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 7, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000725601 (
NR_038933
)
(Conserved hypothetical protein.)
genome : 2,945,982 - 2,968,961 (22,980)
query : 1 - 877 (877/882)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 4, cyto 3, mito_nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0059167
HIT000046089
(
AK126216
)
Representative transcript
(Conserved hypothetical protein.)
genome : 2,956,230 - 2,959,329 (3,100)
query : 1 - 3,104 (3,104/3,104)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059167)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : BC142441
HIX0059167
HIT000363956 (
ENST00000382678
)
(Protein of unknown function DUF4532 family protein.)
genome : 2,958,397 - 2,966,213 (7,817)
query : 1 - 939 (939/939)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 14, cyto 4.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059167)
HIX0010332
HIT000639345 (
ENST00000540300
)
(Non-protein coding transcript.)
genome : 2,966,418 - 2,966,848 (431)
query : 1 - 278 (278/278)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000222219
(
U90917
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,454 - 2,968,957 (2,504)
query : 1 - 1,302 (1,302/1,318)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, nucl 14, cyto 12, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010332
HIT000644554 (
ENST00000545509
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,454 - 2,968,948 (2,495)
query : 1 - 1,293 (1,293/1,293)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, nucl 14, cyto 12, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010332)
HIX0010334
HIT000093904
(
BC035437
)
(Forkhead box protein M1; INS-1 winged helix; Winged-helix factor from INS-1 cells;)
genome : 2,966,847 - 2,974,020 (7,174)
query : 1 - 2,518 (2,518/2,544)
2 exons
identity = 0.999
3'(0.999;0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000208500 (
NM_021953
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,847 - 2,986,321 (19,475)
query : 1 - 3,532 (3,532/3,551)
9 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000319931 (
NM_202002
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,847 - 2,986,321 (19,475)
query : 1 - 3,646 (3,646/3,665)
10 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000319932 (
NM_202003
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,847 - 2,986,321 (19,475)
query : 1 - 3,487 (3,487/3,506)
8 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000722825 (
NM_001243088
)
(Forkhead box protein M1 isoform 4.)
genome : 2,966,847 - 2,986,321 (19,475)
query : 1 - 3,487 (3,487/3,506)
8 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000722826 (
NM_001243089
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,847 - 2,986,321 (19,475)
query : 1 - 3,484 (3,484/3,503)
8 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000221811
(
U83113
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,850 - 2,983,703 (16,854)
query : 11 - 3,315 (3,305/3,336)
8 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
0.989)5'
coverage = 0.996
InterPro :
IPR001766 : Transcription factor, fork head
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR018122 : Fork head domain conserved site1
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000032657
(
BC006192
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,851 - 2,986,206 (19,356)
query : 1 - 3,368 (3,368/3,388)
8 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001766 : Transcription factor, fork head
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR018122 : Fork head domain conserved site1
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000032902
(
BC006529
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,851 - 2,986,206 (19,356)
query : 1 - 3,368 (3,368/3,388)
8 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001766 : Transcription factor, fork head
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR018122 : Fork head domain conserved site1
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000221244
(
U74612
)
Representative transcript
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,849 - 2,986,152 (19,304)
query : 1 - 3,475 (3,475/3,492)
10 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001766 : Transcription factor, fork head
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR018122 : Fork head domain conserved site1
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000221245
(
U74613
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,849 - 2,986,145 (19,297)
query : 1 - 3,309 (3,309/3,326)
8 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001766 : Transcription factor, fork head
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR018122 : Fork head domain conserved site1
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000192289
(
L16783
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,849 - 2,968,471 (1,623)
query : 1 - 1,623 (1,623/1,640)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 14, cyto 10.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000036004
(
BC012863
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,851 - 2,983,663 (16,813)
query : 1 - 3,264 (3,264/3,281)
8 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001766 : Transcription factor, fork head
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR018122 : Fork head domain conserved site1
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC075723
Pongo
sp. (Orangutan) : ENSPPYT00000004922
Pan
sp. (Chimpanzee) : ENSPTRT00000008397
Oryzias
sp. (Medaka) : FJ792669
Takifugu
sp. (Fugu) : SINFRUT00000129473
Rattus
sp. (Rat) : U83112
Monodelphis
sp. (Opossum) : XM_001372840
Equus
sp. (Horse) : XM_001493432
Canis
sp. (Dog) : XM_862951
Bos
sp. (Cow) : XM_872119
Macaca
sp. (Macaque) : XR_012085
HIX0010334
HIT000635111 (
ENST00000536066
)
(Forkhead box protein M1; INS-1 winged helix; Winged-helix factor from INS-1 cells;)
genome : 2,966,847 - 2,974,020 (7,174)
query : 1 - 2,518 (2,518/2,518)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000315203 (
ENST00000361953
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,849 - 2,986,206 (19,358)
query : 1 - 3,370 (3,370/3,370)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000135258 (
ENST00000342628
)
(Forkhead box protein M1 isoform 3.)
genome : 2,966,849 - 2,986,152 (19,304)
query : 1 - 3,475 (3,475/3,475)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000313313 (
ENST00000359843
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,966,850 - 2,983,703 (16,854)
query : 11 - 3,315 (3,305/3,315)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000424003
(
AK291206
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,967,453 - 2,986,224 (18,772)
query : 1 - 2,781 (2,781/2,781)
8 exons
identity = 0.999
3'(0.999;0.994;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001766 : Transcription factor, fork head
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR018122 : Fork head domain conserved site1
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000331892
(
AY542306
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,967,719 - 2,983,693 (15,975)
query : 3 - 2,428 (2,426/2,428)
8 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
InterPro :
IPR001766 : Transcription factor, fork head
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR018122 : Fork head domain conserved site1
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000432711
(
AK313845
)
(Forkhead box protein M1 isoform 4.)
genome : 2,967,804 - 2,986,167 (18,364)
query : 1 - 2,376 (2,376/2,376)
8 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;0.998;
1.000)5'
coverage = 1.000
InterPro :
IPR001766 : Transcription factor, fork head
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR018122 : Fork head domain conserved site1
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000099906
(
BT006986
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,967,804 - 2,983,644 (15,841)
query : 1 - 2,292 (2,292/2,292)
8 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001766 : Transcription factor, fork head
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR018122 : Fork head domain conserved site1
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000634395 (
ENST00000535350
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,968,654 - 2,975,689 (7,036)
query : 18 - 618 (601/618)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.972
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000347642 (
ENST00000366362
)
(Forkhead box protein M1; INS-1 winged helix; Winged-helix factor from INS-1 cells;)
genome : 2,972,915 - 2,973,876 (962)
query : 1 - 775 (775/775)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, mito_nucl 13.8333, nucl 5.5,
cyto_nucl 4.66667, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000637609 (
ENST00000538564
)
(Forkhead box protein M1 isoform 4.)
genome : 2,973,598 - 2,983,380 (9,783)
query : 1 - 693 (693/693)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29, cyto 1.5, cyto_nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000636063 (
ENST00000537018
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,974,051 - 2,983,303 (9,253)
query : 1 - 740 (740/740)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0010334
HIT000644094 (
ENST00000545049
)
(Forkhead box protein M1; Forkhead-related protein FKHL16; Hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; HNF-3/fork-head homolog 11; M-phase phosphoprotein 2; MPM-2 reactive phosphoprotein 2; Transcription factor Trident; Winged-helix factor from INS-1 cells;)
genome : 2,977,397 - 2,983,366 (5,970)
query : 1 - 900 (900/900)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 9.5, cyto_nucl 9.5, nucl 8.5, extr 8, mito 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010334)
HIX0017426
HIT000726718 (
NR_046433
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,985,424 - 2,998,691 (13,268)
query : 1 - 1,873 (1,873/1,884)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, mito 6, extr 4, nucl 4, cysk 2, extr_plas 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000635108 (
ENST00000536063
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,985,424 - 2,997,334 (11,911)
query : 1 - 516 (516/516)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, extr 5, mito 5, nucl 4, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000563445 (
NR_027365
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,365 - 2,998,691 (12,327)
query : 1 - 1,699 (1,699/1,710)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 7.5, cyto_nucl 6, cyto 3.5, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000723318 (
NM_001252499
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,365 - 2,998,691 (12,327)
query : 1 - 1,951 (1,951/1,962)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000723319 (
NM_001252500
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,365 - 2,998,691 (12,327)
query : 1 - 1,909 (1,909/1,920)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000723952 (
NM_001257097
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,365 - 2,998,691 (12,327)
query : 1 - 2,072 (2,072/2,083)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000723953 (
NM_001257098
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,365 - 2,998,691 (12,327)
query : 1 - 1,971 (1,971/1,982)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000726717 (
NR_046432
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,365 - 2,998,691 (12,327)
query : 1 - 2,085 (2,085/2,096)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 13, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000566855 (
ENST00000461997
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,365 - 2,998,437 (12,073)
query : 1 - 1,655 (1,655/1,655)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000637681 (
ENST00000538636
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,365 - 2,997,303 (10,939)
query : 1 - 583 (583/583)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000569416 (
ENST00000464682
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,374 - 2,998,606 (12,233)
query : 1 - 1,605 (1,605/1,605)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_pero 3.33333, cyto_nucl 3.16667,
nucl 2.5, cyto 2.5, extr 2, pero 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000592895 (
ENST00000489288
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,381 - 2,998,626 (12,246)
query : 1 - 1,870 (1,870/1,870)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000434230
(
AK315364
)
(RAD9, HUS1, RAD1-interacting nuclear orphan protein 1; RAD9, RAD1, HUS1-interacting nuclear orphan protein;)
genome : 2,986,389 - 2,997,625 (11,237)
query : 9 - 868 (860/868)
3 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 0.991
InterPro :
IPR029293 : Rad9, Rad1, Hus1-interacting nuclear orphan protein 1
GO :
0000077 : Biological Process : DNA damage checkpoint
0005634 : Cellular Component : nucleus
0071479 : Biological Process : cellular response to ionizing radiation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000242004
(
AB073599
)
Representative transcript
(RAD9, HUS1, RAD1-interacting nuclear orphan protein 1; RAD9, RAD1, HUS1-interacting nuclear orphan protein;)
genome : 2,986,389 - 2,998,625 (12,237)
query : 1 - 1,861 (1,861/1,872)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR029293 : Rad9, Rad1, Hus1-interacting nuclear orphan protein 1
GO :
0000077 : Biological Process : DNA damage checkpoint
0005634 : Cellular Component : nucleus
0071479 : Biological Process : cellular response to ionizing radiation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000005219
(
AK021945
)
(RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 isoform 2.)
genome : 2,986,389 - 2,998,624 (12,236)
query : 1 - 1,608 (1,608/1,608)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR029293 : Rad9, Rad1, Hus1-interacting nuclear orphan protein 1
GO :
0000077 : Biological Process : DNA damage checkpoint
0005634 : Cellular Component : nucleus
0071479 : Biological Process : cellular response to ionizing radiation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto_nucl 5, nucl 4, cyto 4, pero 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000499237
(
AK304613
)
(RAD9, HUS1, RAD1-interacting nuclear orphan protein 1; RAD9, RAD1, HUS1-interacting nuclear orphan protein;)
genome : 2,986,389 - 2,998,437 (12,049)
query : 1 - 1,632 (1,632/1,632)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR029293 : Rad9, Rad1, Hus1-interacting nuclear orphan protein 1
GO :
0000077 : Biological Process : DNA damage checkpoint
0005634 : Cellular Component : nucleus
0071479 : Biological Process : cellular response to ionizing radiation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000637745 (
ENST00000538700
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,389 - 2,997,223 (10,835)
query : 1 - 580 (580/580)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000635023 (
ENST00000535978
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,389 - 2,997,173 (10,785)
query : 1 - 543 (543/543)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 13, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000347565 (
ENST00000366285
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,986,389 - 2,997,100 (10,712)
query : 1 - 517 (517/517)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000032216
(
BC005106
)
(RAD9, HUS1, RAD1-interacting nuclear orphan protein 1; RAD9, RAD1, HUS1-interacting nuclear orphan protein;)
genome : 2,986,399 - 2,998,181 (11,783)
query : 1 - 1,407 (1,407/1,426)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR029293 : Rad9, Rad1, Hus1-interacting nuclear orphan protein 1
GO :
0000077 : Biological Process : DNA damage checkpoint
0005634 : Cellular Component : nucleus
0071479 : Biological Process : cellular response to ionizing radiation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000085785
(
BC000079
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,997,167 - 2,998,174 (1,008)
query : 1 - 1,008 (1,008/1,025)
1 exon
identity = 0.994
5'(0.994)3'
coverage = 1.000
InterPro :
IPR029293 : Rad9, Rad1, Hus1-interacting nuclear orphan protein 1
GO :
0000077 : Biological Process : DNA damage checkpoint
0005634 : Cellular Component : nucleus
0071479 : Biological Process : cellular response to ionizing radiation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 17.5, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0017426
HIT000602283 (
ENST00000500236
)
(Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 family protein.)
genome : 2,997,167 - 2,998,174 (1,008)
query : 1 - 1,008 (1,008/1,008)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 17.5, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017426)
HIX0219731
HIT000200163 (
NM_003324
)
(Tubby, C-terminal domain containing protein.)
genome : 3,000,033 - 3,050,306 (50,274)
query : 1 - 3,106 (3,106/3,106)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 11
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000561918 (
NM_001160408
)
(Tubby, C-terminal domain containing protein.)
genome : 3,000,033 - 3,050,306 (50,274)
query : 1 - 2,001 (2,001/2,001)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 10
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000007520
(
AK024246
)
Representative transcript
(Tubby-related protein 3; Tubby-like protein 3;)
genome : 3,000,033 - 3,049,487 (49,455)
query : 1 - 2,175 (2,175/2,175)
12 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.990;1.000;0.997;0.997)3'
coverage = 1.000
InterPro :
IPR000007 : Tubby, C-terminal
IPR005398 : Tubby, N-terminal
IPR018066 : Tubby, C-terminal, conserved site
IPR025659 : Tubby C-terminal-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000643988 (
ENST00000544943
)
(Tubby, C-terminal domain containing protein.)
genome : 3,000,053 - 3,048,511 (48,459)
query : 1 - 548 (548/548)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 7, extr 4, cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000487909
(
AK293285
)
(Tubby-related protein 3; Tubby-like protein 3;)
genome : 3,000,057 - 3,048,954 (48,898)
query : 4 - 1,376 (1,373/1,376)
8 exons
identity = 0.999
5'(0.990;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.998
InterPro :
IPR000007 : Tubby, C-terminal
IPR018066 : Tubby, C-terminal, conserved site
IPR025659 : Tubby C-terminal-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000644376 (
ENST00000545331
)
(Tubby, C-terminal domain containing protein.)
genome : 3,000,057 - 3,048,954 (48,898)
query : 1 - 1,373 (1,373/1,373)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000426300
(
AK307434
)
(Tubby, C-terminal domain containing protein.)
genome : 3,000,057 - 3,048,726 (48,670)
query : 1 - 1,229 (1,229/1,229)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000007 : Tubby, C-terminal
IPR018066 : Tubby, C-terminal, conserved site
IPR025659 : Tubby C-terminal-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, extr 8, mito_nucl 8, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000637399 (
ENST00000538354
)
(Tubby, C-terminal domain containing protein.)
genome : 3,000,057 - 3,048,726 (48,670)
query : 1 - 1,229 (1,229/1,229)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, extr 8, mito_nucl 8, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000041619
(
BC032587
)
(Tubby-related protein 3; Tubby-like protein 3;)
genome : 3,000,063 - 3,050,300 (50,238)
query : 5 - 2,904 (2,900/2,918)
12 exons
identity = 0.998
5'(0.967;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 0.999
InterPro :
IPR000007 : Tubby, C-terminal
IPR005398 : Tubby, N-terminal
IPR018066 : Tubby, C-terminal, conserved site
IPR025659 : Tubby C-terminal-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000546054 (
ENST00000448120
)
(Tubby, C-terminal domain containing protein.)
genome : 3,000,063 - 3,050,306 (50,244)
query : 1 - 3,076 (3,076/3,076)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000063986
(
AF045583
)
(Tubby, C-terminal domain containing protein.)
genome : 3,000,070 - 3,048,673 (48,604)
query : 1 - 1,437 (1,437/1,482)
11 exons
identity = 0.985
5'(0.965;1.000;1.000;1.000;1.000;0.961;1.000;
1.000;1.000;0.994;0.949)3'
coverage = 0.970
InterPro :
IPR000007 : Tubby, C-terminal
IPR005398 : Tubby, N-terminal
IPR018066 : Tubby, C-terminal, conserved site
IPR025659 : Tubby C-terminal-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000480434 (
ENST00000397132
)
(Tubby, C-terminal domain containing protein.)
genome : 3,000,073 - 3,050,296 (50,224)
query : 1 - 1,951 (1,951/1,951)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000640723 (
ENST00000541678
)
(Tubby, C-terminal domain containing protein.)
genome : 3,046,844 - 3,049,488 (2,645)
query : 1 - 526 (526/542)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14.5, nucl 7.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0219731
HIT000637749 (
ENST00000538704
)
(Tubby, C-terminal domain containing protein.)
genome : 3,047,280 - 3,049,488 (2,209)
query : 20 - 433 (414/449)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.956
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18, nucl 13.5, cyto 13.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219731)
HIX0129680
HIT000338581
(
BC106943
)
Representative transcript
(Non-protein coding transcript.)
genome : 3,048,540 - 3,048,669 (130)
query : 7 - 135 (129/143)
1 exon
identity = 0.985
3'(0.985)5'
coverage = 0.902
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0129680)
HIX0201891
HIT000200065 (
NM_003213
)
(Transcriptional enhancer factor TEF-3; TEA domain family member 4; TEAD-4; Transcription factor 13-like 1; Transcription factor RTEF-1;)
genome : 3,068,478 - 3,149,842 (81,365)
query : 1 - 1,795 (1,795/1,798)
13 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000319839 (
NM_201441
)
(Transcriptional enhancer factor TEF-3 isoform 3.)
genome : 3,068,478 - 3,149,842 (81,365)
query : 1 - 1,666 (1,666/1,669)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000084421
(
AY101179
)
(Transcriptional enhancer factor TEF-3 isoform 3.)
genome : 3,068,496 - 3,149,831 (81,336)
query : 1 - 1,636 (1,636/1,658)
12 exons
identity = 0.999
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000818 : TEA/ATTS
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000312122 (
ENST00000358409
)
(Transcriptional enhancer factor TEF-3 isoform 3.)
genome : 3,068,496 - 3,149,831 (81,336)
query : 1 - 1,637 (1,637/1,637)
12 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000639359 (
ENST00000540314
)
(Non-protein coding transcript.)
genome : 3,068,572 - 3,103,999 (35,428)
query : 1 - 578 (578/578)
3 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000635871 (
ENST00000536826
)
(Transcriptional enhancer factor TEF-3; TEA domain family member 4; TEAD-4; Transcription factor 13-like 1; Transcription factor RTEF-1;)
genome : 3,068,573 - 3,104,149 (35,577)
query : 1 - 570 (570/570)
3 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, mito 3, extr 2, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000037143
(
BC015497
)
(Transcriptional enhancer factor TEF-3; TEA domain family member 4; TEAD-4; Transcription factor 13-like 1; Transcription factor RTEF-1;)
genome : 3,068,580 - 3,149,837 (81,258)
query : 1 - 1,688 (1,688/1,702)
13 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000818 : TEA/ATTS
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000313330 (
ENST00000359864
)
(Transcriptional enhancer factor TEF-3; TEA domain family member 4; TEAD-4; Transcription factor 13-like 1; Transcription factor RTEF-1;)
genome : 3,068,580 - 3,149,839 (81,260)
query : 1 - 1,690 (1,690/1,690)
13 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000330727
(
AK222947
)
Representative transcript
(Transcriptional enhancer factor TEF-3; TEA domain family member 4; TEAD-4; Transcription factor 13-like 1; Transcription factor RTEF-1;)
genome : 3,068,591 - 3,149,839 (81,249)
query : 1 - 1,679 (1,679/1,695)
13 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000818 : TEA/ATTS
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : BC055211
Mus
sp. (Mouse) : D87966
Monodelphis
sp. (Opossum) : ENSMODT00000023273
Oryzias
sp. (Medaka) : ENSORLT00000003175
Oryzias
sp. (Medaka) : ENSORLT00000008008
Pongo
sp. (Orangutan) : ENSPPYT00000004925
Rattus
sp. (Rat) : ENSRNOT00000050834
Tetraodon
sp. (Tetraodon) : GSTENT00005166001
Tetraodon
sp. (Tetraodon) : GSTENT00016835001
Takifugu
sp. (Fugu) : SINFRUT00000177632
Gallus
sp. (Chicken) : U06849
Macaca
sp. (Macaque) : XM_001117976
Equus
sp. (Horse) : XM_001915384
Pan
sp. (Chimpanzee) : XM_508934
Bos
sp. (Cow) : XM_605145
Canis
sp. (Dog) : XM_849541
HIX0201891
HIT000220786
(
U63824
)
(Transcriptional enhancer factor TEF-3 isoform 3.)
genome : 3,068,607 - 3,149,842 (81,236)
query : 1 - 1,667 (1,667/1,670)
13 exons
identity = 0.992
5'(0.951;1.000)3'
coverage = 0.998
InterPro :
IPR000818 : TEA/ATTS
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000319841 (
NM_201443
)
(Transcriptional enhancer factor TEF-3; TEA domain family member 4; TEAD-4; Transcription factor 13-like 1; Transcription factor RTEF-1;)
genome : 3,068,748 - 3,149,842 (81,095)
query : 1 - 1,736 (1,736/1,739)
11 exons
identity = 1.000
5'(1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto_nucl 9.33333, cyto 8.5, cyto_pero 6,
extr 4, nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000642080 (
ENST00000543035
)
(Transcriptional enhancer factor TEF-3; TEA domain family member 4; TEAD-4; Transcription factor 13-like 1; Transcription factor RTEF-1;)
genome : 3,068,962 - 3,127,754 (58,793)
query : 1 - 801 (801/801)
6 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000055467
(
BX640921
)
(Transcriptional enhancer factor TEF-3; TEA domain family member 4; TEAD-4; Transcription factor 13-like 1; Transcription factor RTEF-1;)
genome : 3,069,083 - 3,149,837 (80,755)
query : 2 - 1,397 (1,396/1,418)
11 exons
identity = 1.000
5'(1.000)3'
coverage = 0.997
InterPro :
IPR000818 : TEA/ATTS
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto_nucl 9.33333, cyto 8.5, cyto_pero 6,
extr 4, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000480424 (
ENST00000397122
)
(Transcriptional enhancer factor TEF-3; TEA domain family member 4; TEAD-4; Transcription factor 13-like 1; Transcription factor RTEF-1;)
genome : 3,069,083 - 3,149,837 (80,755)
query : 1 - 1,396 (1,396/1,396)
11 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto_nucl 9.33333, cyto 8.5, cyto_pero 6,
extr 4, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0201891
HIT000541920 (
ENST00000443986
)
(Transcriptional enhancer factor TEF-3 isoform 2.)
genome : 3,069,110 - 3,129,925 (60,816)
query : 1 - 641 (641/641)
6 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201891)
HIX0010321
HIT000025946
(
AL137658
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,129 - 1,963,203 (62,075)
query : 1 - 2,878 (2,878/2,944)
15 exons
identity = 0.997
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13, cyto 11.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000054251
(
BX537436
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,129 - 2,027,832 (126,704)
query : 2 - 5,940 (5,939/5,960)
36 exons
identity = 0.997
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.989;1.000;
0.993;1.000;1.000;1.000;1.000;1.000;0.988;
0.998)5'
coverage = 1.000
InterPro :
IPR002035 : von Willebrand factor, type A
IPR004010 : Cache domain
IPR013608 : VWA N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto_mito 10.1667, mito_pero 9.83333,
nucl 6.5, cyto_nucl 4.33333, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000054252
(
BX537437
)
Representative transcript
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,131 - 2,027,870 (126,740)
query : 2 - 5,338 (5,337/5,359)
38 exons
identity = 0.998
3'(0.995;1.000;1.000;0.992;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.990;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.993;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002035 : von Willebrand factor, type A
IPR004010 : Cache domain
IPR013608 : VWA N-terminal
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12, nucl 8.5, cyto_mito 7.66667,
mito_pero 6.83333, extr 6, cyto_nucl 5.83333, E.R. 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK030723
Equus
sp. (Horse) : ENSECAT00000024925
Gallus
sp. (Chicken) : ENSGALT00000037501
Oryzias
sp. (Medaka) : ENSORLT00000000889
Oryzias
sp. (Medaka) : ENSORLT00000017522
Pongo
sp. (Orangutan) : ENSPPYT00000004907
Takifugu
sp. (Fugu) : SINFRUT00000172762
Takifugu
sp. (Fugu) : SINFRUT00000182907
Rattus
sp. (Rat) : XM_001056965
Macaca
sp. (Macaque) : XM_001117901
Pan
sp. (Chimpanzee) : XM_001152728
Monodelphis
sp. (Opossum) : XM_001373455
Danio
sp. (Zebrafish) : XM_001920557
Canis
sp. (Dog) : XM_534930
Danio
sp. (Zebrafish) : XM_691543
HIX0010321
HIT000364000 (
ENST00000382722
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,123 - 2,028,002 (126,880)
query : 1 - 5,475 (5,475/5,475)
38 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12, nucl 8.5, cyto_mito 7.66667,
mito_pero 6.83333, extr 6, cyto_nucl 5.83333, E.R. 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000214738 (
NM_172364
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,123 - 2,027,870 (126,748)
query : 1 - 5,343 (5,343/5,343)
38 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12, nucl 8.5, cyto_mito 7.66667,
mito_pero 6.83333, extr 6, cyto_nucl 5.83333, E.R. 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000111981 (
ENST00000280663
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,129 - 2,027,832 (126,704)
query : 1 - 5,936 (5,936/5,936)
36 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20.5, mito_pero 11, nucl 6.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000636829 (
ENST00000537784
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,129 - 1,963,203 (62,075)
query : 1 - 2,876 (2,876/2,876)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13, cyto 11.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000435712
(
BC150186
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,939 - 2,027,803 (125,865)
query : 1 - 4,450 (4,450/4,493)
37 exons
identity = 0.999
3'(0.998;1.000;1.000;0.992;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002035 : von Willebrand factor, type A
IPR004010 : Cache domain
IPR013608 : VWA N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000053318
(
BC048288
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,969 - 1,920,893 (18,925)
query : 1 - 1,603 (1,603/1,664)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, cyto_nucl 5.33333, cyto 4.5, nucl 4,
cyto_pero 3.66667, mito_nucl 3.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000542529 (
ENST00000444595
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,939 - 2,027,803 (125,865)
query : 1 - 4,450 (4,450/4,450)
37 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000644640 (
ENST00000545595
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,901,968 - 1,920,904 (18,937)
query : 1 - 1,615 (1,615/1,615)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, cyto_nucl 5.33333, cyto 4.5, nucl 4,
cyto_pero 3.66667, mito_nucl 3.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000081120
(
AF516695
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,902,007 - 2,028,002 (125,996)
query : 1 - 4,591 (4,591/4,604)
38 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.978;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.985;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.993;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR002035 : von Willebrand factor, type A
IPR004010 : Cache domain
IPR013608 : VWA N-terminal
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 13, cyto_mito 8.16667, nucl 7.5,
mito_pero 7.33333, extr 6, cyto_nucl 5.33333, E.R. 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000495858
(
AK301234
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,902,209 - 1,920,957 (18,749)
query : 1 - 1,498 (1,498/1,498)
11 exons
identity = 0.997
3'(0.996;0.988;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11, nucl 8, cyto_nucl 8, cyto 6, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000637495 (
ENST00000538450
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,902,209 - 1,920,957 (18,749)
query : 1 - 1,498 (1,498/1,498)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11, nucl 8, cyto_nucl 8, cyto 6, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000699836 (
ENST00000587995
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,902,335 - 2,027,697 (125,363)
query : 1 - 3,883 (3,883/3,883)
37 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12, nucl 8.5, cyto_mito 7.66667,
mito_pero 6.83333, extr 6, cyto_nucl 5.83333, E.R. 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000697243 (
ENST00000585385
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,902,674 - 1,920,926 (18,253)
query : 1 - 976 (976/976)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000699918 (
ENST00000588077
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,902,732 - 2,024,393 (121,662)
query : 1 - 3,311 (3,311/3,311)
38 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 23, cyto_nucl 16, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000637072 (
ENST00000538027
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,902,769 - 1,920,926 (18,158)
query : 1 - 952 (952/952)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, nucl 6, cyto_pero 3.5, cyto 2.5, mito 2,
lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000635891 (
ENST00000536846
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,902,780 - 1,920,886 (18,107)
query : 1 - 895 (895/895)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 18, cyto 8, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000698036 (
ENST00000586184
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,904,275 - 2,027,639 (123,365)
query : 1 - 3,499 (3,499/3,499)
37 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, mito_pero 8, nucl 7.5, extr 5, cyto_nucl 5,
E.R. 2.5, extr_plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000697562 (
ENST00000585708
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,904,309 - 2,024,393 (120,085)
query : 1 - 3,273 (3,273/3,273)
37 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 14.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000636968 (
ENST00000537923
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,904,839 - 1,920,906 (16,068)
query : 1 - 556 (556/556)
7 exons
identity = 0.980
3'(1.000;1.000;0.836;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0010321
HIT000697586 (
ENST00000585732
)
(Voltage-dependent calcium channel subunit alpha-2/delta-4; Voltage-gated calcium channel subunit alpha-2/delta-4; Contains: Voltage-dependent calcium channel subunit alpha-2-4; Contains: Voltage-dependent calcium channel subunit delta-4; Precursor;)
genome : 1,918,545 - 2,027,712 (109,168)
query : 1 - 2,566 (2,566/2,566)
26 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, mito_pero 9, nucl 8, cyto_nucl 6, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010321)
HIX0201841
HIT000493827
(
AK299203
)
Representative transcript
(MRNA-decapping enzyme 1B.)
genome : 2,050,757 - 2,113,636 (62,880)
query : 1 - 2,274 (2,274/2,274)
11 exons
identity = 0.999
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010334 : Dcp1-like decapping
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14, nucl 5.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK047334
Bos
sp. (Cow) : BC102799
Danio
sp. (Zebrafish) : BC134082
Pongo
sp. (Orangutan) : CR861447
Equus
sp. (Horse) : ENSECAT00000019441
Gallus
sp. (Chicken) : ENSGALT00000021246
Monodelphis
sp. (Opossum) : ENSMODT00000023380
Oryzias
sp. (Medaka) : ENSORLT00000017548
Rattus
sp. (Rat) : ENSRNOT00000009832
Tetraodon
sp. (Tetraodon) : GSTENT00014506001
Takifugu
sp. (Fugu) : SINFRUT00000158563
Macaca
sp. (Macaque) : XM_001097703
Pan
sp. (Chimpanzee) : XM_001153642
Canis
sp. (Dog) : XM_534931
HIX0201841
HIT000213903 (
NM_152640
)
(mRNA-decapping enzyme 1B; EC=3.-.-.-;)
genome : 2,055,215 - 2,113,677 (58,463)
query : 1 - 2,091 (2,091/2,105)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14.5, nucl 9.5, cyto_mito 9.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
HIX0201841
HIT000084752
(
AY146652
)
(mRNA-decapping enzyme 1B; EC=3.-.-.-;)
genome : 2,055,220 - 2,113,677 (58,458)
query : 1 - 2,089 (2,089/2,089)
9 exons
identity = 0.998
3'(0.996;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.-.-.-
InterPro :
IPR010334 : Dcp1-like decapping
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14.5, nucl 9.5, cyto_mito 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
HIX0201841
HIT000111982 (
ENST00000280665
)
(mRNA-decapping enzyme 1B; EC=3.-.-.-;)
genome : 2,055,220 - 2,113,677 (58,458)
query : 1 - 2,086 (2,086/2,086)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14.5, nucl 9.5, cyto_mito 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
HIX0201841
HIT000012814
(
AK056200
)
(mRNA-decapping enzyme 1B; EC=3.-.-.-;)
genome : 2,055,220 - 2,113,623 (58,404)
query : 1 - 2,035 (2,035/2,035)
9 exons
identity = 0.998
3'(0.996;1.000;0.995;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.-.-.-
InterPro :
IPR010334 : Dcp1-like decapping
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14.5, nucl 9.5, cyto_mito 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
HIX0201841
HIT000052814
(
BC043437
)
(mRNA-decapping enzyme 1B; EC=3.-.-.-;)
genome : 2,055,247 - 2,113,639 (58,393)
query : 1 - 2,024 (2,024/2,040)
9 exons
identity = 0.997
3'(0.990;1.000;0.995;1.000;0.993;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.-.-.-
InterPro :
IPR010334 : Dcp1-like decapping
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14.5, nucl 9.5, cyto_mito 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
HIX0201841
HIT000480472 (
ENST00000397173
)
(MRNA-decapping enzyme 1B.)
genome : 2,055,318 - 2,113,636 (58,319)
query : 1 - 2,073 (2,073/2,073)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14, nucl 5.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
HIX0201841
HIT000642426 (
ENST00000543381
)
(MRNA-decapping enzyme 1B.)
genome : 2,055,318 - 2,113,636 (58,319)
query : 1 - 2,073 (2,073/2,073)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14, nucl 5.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
HIX0201841
HIT000429341
(
AK310475
)
(MRNA-decapping enzyme 1B.)
genome : 2,059,202 - 2,114,209 (55,008)
query : 1 - 1,761 (1,761/1,761)
8 exons
identity = 0.998
3'(1.000;0.999;1.000;1.000;1.000;1.000;1.000;
0.933)5'
coverage = 1.000
InterPro :
IPR010334 : Dcp1-like decapping
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 8, cyto_pero 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
HIX0201841
HIT000640745 (
ENST00000541700
)
(MRNA-decapping enzyme 1B.)
genome : 2,061,943 - 2,113,633 (51,691)
query : 1 - 948 (948/948)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 12.5, mito 8, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
HIX0201841
HIT000636770 (
ENST00000537725
)
(MRNA-decapping enzyme 1B.)
genome : 2,070,482 - 2,113,593 (43,112)
query : 1 - 598 (598/598)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25.5, cyto_nucl 14.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201841)
HIX0010325
HIT000197737 (
NM_000719
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,480 (13,480/13,480)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559547 (
NM_001129827
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,624 (13,624/13,624)
49 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559549 (
NM_001129829
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,603 (13,603/13,603)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559550 (
NM_001129830
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,585 (13,585/13,585)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559551 (
NM_001129831
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,564 (13,564/13,564)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559552 (
NM_001129832
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,540 (13,540/13,540)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559553 (
NM_001129833
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,537 (13,537/13,537)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559554 (
NM_001129834
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,537 (13,537/13,537)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559555 (
NM_001129835
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,537 (13,537/13,537)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559556 (
NM_001129836
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,531 (13,531/13,531)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559557 (
NM_001129837
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,504 (13,504/13,504)
46 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559558 (
NM_001129838
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,504 (13,504/13,504)
46 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559559 (
NM_001129839
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,498 (13,498/13,498)
46 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559560 (
NM_001129840
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,480 (13,480/13,480)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559561 (
NM_001129841
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,480 (13,480/13,480)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559562 (
NM_001129842
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,480 (13,480/13,480)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559563 (
NM_001129843
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,480 (13,480/13,480)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559564 (
NM_001129844
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,471 (13,471/13,471)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000559565 (
NM_001129846
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,447 (13,447/13,447)
46 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000562146 (
NM_199460
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,729 (13,729/13,729)
50 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000654429 (
NM_001167623
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,480 (13,480/13,480)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000654430 (
NM_001167624
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,585 (13,585/13,585)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000654431 (
NM_001167625
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,416 - 2,807,115 (644,700)
query : 1 - 13,660 (13,660/13,660)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482702 (
ENST00000399655
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,464 - 2,802,108 (639,645)
query : 1 - 8,425 (8,425/8,425)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000129785 (
ENST00000335762
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,464 - 2,800,576 (638,113)
query : 1 - 6,968 (6,968/6,968)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000503103
(
BC146846
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 19.)
genome : 2,162,601 - 2,800,718 (638,118)
query : 1 - 6,889 (6,889/6,889)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.992;0.985;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.997;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000328951
(
AB209016
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 20.)
genome : 2,162,704 - 2,724,137 (561,434)
query : 1 - 6,534 (6,534/6,534)
27 exons
identity = 0.999
5'(1.000;1.000;1.000;0.993;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000584899 (
ENST00000480911
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,704 - 2,724,137 (561,434)
query : 1 - 6,811 (6,811/6,811)
29 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482654 (
ENST00000399603
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,801,325 (638,597)
query : 1 - 7,377 (7,377/7,377)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482668 (
ENST00000399617
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,801,325 (638,597)
query : 1 - 7,482 (7,482/7,482)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482685 (
ENST00000399634
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,801,325 (638,597)
query : 1 - 7,590 (7,590/7,590)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000505600 (
ENST00000406454
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,801,325 (638,597)
query : 1 - 7,590 (7,590/7,590)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000125140 (
ENST00000327702
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,616 (6,616/6,616)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000136730 (
ENST00000344100
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,634 (6,634/6,634)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000244987
(
AJ224873
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 14.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,515 (6,515/6,515)
47 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000307482 (
ENST00000347598
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,655 (6,655/6,655)
49 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326968
(
Z34809
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 15.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,515 (6,515/6,515)
47 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326969
(
Z34810
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 18.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,515 (6,515/6,515)
47 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326970
(
Z34811
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 8.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,572 (6,572/6,572)
47 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326971
(
Z34812
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 11.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,539 (6,539/6,539)
46 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326972
(
Z34813
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 12.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,539 (6,539/6,539)
46 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326973
(
Z34814
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 20.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,482 (6,482/6,482)
46 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326974
(
Z34815
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 17.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,515 (6,515/6,515)
47 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326975
(
Z34816
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 16.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,515 (6,515/6,515)
47 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326976
(
Z34817
)
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,518 (6,518/6,518)
46 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.992;1.000;1.000;1.000;
1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326977
(
Z34818
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 6.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,575 (6,575/6,575)
48 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326978
(
Z34819
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 5.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,599 (6,599/6,599)
48 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326979
(
Z34820
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 10.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,566 (6,566/6,566)
47 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326980
(
Z34821
)
Representative transcript
(Voltage-dependent L-type calcium channel subunit alpha-1C; Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle; Voltage-gated calcium channel subunit alpha Cav1.2;)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,659 (6,659/6,659)
49 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326981
(
Z34822
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 9.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,620 (6,620/6,620)
48 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.981;1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000328040
(
Z74996
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 9.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,572 (6,572/6,572)
47 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000332403
(
AY830711
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 13.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,533 (6,533/6,533)
46 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000332404
(
AY830712
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 7.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,572 (6,572/6,572)
47 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000332405
(
AY830713
)
(Voltage-dependent L-type calcium channel subunit alpha-1C isoform 3.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,638 (6,638/6,638)
47 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482643 (
ENST00000399591
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,535 (6,535/6,535)
46 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482646 (
ENST00000399595
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,535 (6,535/6,535)
46 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482648 (
ENST00000399597
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,511 (6,511/6,511)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482652 (
ENST00000399601
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,511 (6,511/6,511)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482657 (
ENST00000399606
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,571 (6,571/6,571)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482672 (
ENST00000399621
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,568 (6,568/6,568)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482680 (
ENST00000399629
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,562 (6,562/6,562)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482688 (
ENST00000399637
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,568 (6,568/6,568)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482689 (
ENST00000399638
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,595 (6,595/6,595)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482692 (
ENST00000399641
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,511 (6,511/6,511)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482694 (
ENST00000399644
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,511 (6,511/6,511)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000482698 (
ENST00000399649
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,529 (6,529/6,529)
46 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000504277 (
ENST00000402845
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,162,729 - 2,800,459 (637,731)
query : 1 - 6,568 (6,568/6,568)
47 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000192826
(
L29529
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,224,419 - 2,801,325 (576,907)
query : 11 - 7,498 (7,488/7,499)
46 exons
identity = 0.996
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.991;
0.988;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997;1.000;1.000;
1.000;1.000;1.000;0.980)3'
coverage = 0.999
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000192827
(
L29534
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,224,419 - 2,801,325 (576,907)
query : 5 - 7,417 (7,413/7,417)
47 exons
identity = 0.996
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.991;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.997;0.981;
1.000;1.000;1.000;1.000;0.981)3'
coverage = 0.999
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000192828
(
L29536
)
(Voltage-dependent calcium channel, L-type, alpha-1C subunit family protein.)
genome : 2,224,419 - 2,801,325 (576,907)
query : 5 - 7,312 (7,308/7,312)
46 exons
identity = 0.996
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.991;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.997;1.000;
1.000;1.000;1.000;0.981)3'
coverage = 0.999
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005446 : Voltage-dependent calcium channel, L-type, alpha-1 subunit
IPR005451 : Voltage-dependent calcium channel, L-type, alpha-1C subunit
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000326725
(
Z26295
)
(Ion transport domain containing protein.)
genome : 2,716,214 - 2,788,784 (72,571)
query : 1 - 2,050 (2,050/2,050)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.989;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR005821 : Ion transport domain
IPR014873 : Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000195854
(
M57971
)
(Voltage-dependent calcium channel, alpha-1 subunit family protein.)
genome : 2,717,804 - 2,774,123 (56,320)
query : 1 - 882 (882/882)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005821 : Ion transport domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0010325
HIT000195855
(
M57972
)
(Voltage-dependent calcium channel, alpha-1 subunit family protein.)
genome : 2,717,804 - 2,774,123 (56,320)
query : 1 - 882 (882/882)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002077 : Voltage-dependent calcium channel, alpha-1 subunit
IPR005821 : Ion transport domain
IPR027359 : Voltage-dependent channel, four helix bundle domain
GO :
0005216 : Molecular Function : ion channel activity
0005245 : Molecular Function : voltage-gated calcium channel activity
0005891 : Cellular Component : voltage-gated calcium channel complex
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0055085 : Biological Process : transmembrane transport
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0010325)
HIX0220705
HIT000494614
(
AK299990
)
Representative transcript
(Tubby, N-terminal domain containing protein.)
genome : 2,986,389 - 3,043,728 (57,340)
query : 1 - 978 (978/995)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.983
InterPro :
IPR005398 : Tubby, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 11.5, mito 7, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220705)
HIX0220705
HIT000639229 (
ENST00000540184
)
(Tubby, N-terminal domain containing protein.)
genome : 2,986,389 - 3,043,728 (57,340)
query : 1 - 978 (978/978)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 11.5, mito 7, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220705)
HIX0192470
pHIT000111236 ( pHIT000111236 )
Representative transcript
(Conserved hypothetical protein.)
genome : 1,866,470 - 1,866,763 (294)
query : 1 - 294 (294/294)
1 exon
InterPro :
IPR000876 : Ribosomal protein S4e
IPR005824 : KOW
IPR013845 : Ribosomal protein S4e, central region
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0192470)
CAGE tag :
T12R001B5529
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : XR_011887
Pan
sp. (Chimpanzee) : XR_021235
AC004672.1
1500001-1554938 F -
NCBI
AC004671.1
1554939-1691070 F +
NCBI
AC005182.2
1691071-1767022 F +
NCBI
AC005183.3
1767023-1849721 F +
NCBI
AC005343.1
1849722-1984928 F -
NCBI
AC005342.1
1984929-2205106 F +
NCBI
AC006051.1
2205107-2243808 F -
NCBI
AC005344.1
2243809-2397338 F +
NCBI
AC005293.1
2397339-2540462 F -
NCBI
AC005414.2
2540463-2649629 F +
NCBI
AC005866.4
2649630-2767012 F -
NCBI
AC007618.21
2767013-2807888 F -
NCBI
AC092471.12
2807889-2890095 F -
NCBI
AC005841.3
2890096-2985169 F -
NCBI
AC005911.6
2985170-3085655 F -
NCBI
AC131234.3
3085656-3100000 F -
NCBI