bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0170874
HIT000530042 (
ENST00000432108
)
(Hypothetical short protein.)
genome : 85,671,410 - 85,672,678 (1,269)
query : 1 - 309 (309/309)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170874)
HIX0134128
HIT000474977_01 (
ENST00000391458
)
(High mobility group nucleosome-binding domain-containing family protein.)
genome : 85,841,185 - 85,841,751 (567)
query : 1 - 268 (268/268)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0134128)
HIX0008985
HIT000015051
(
AK074271
)
Representative transcript
(Conserved hypothetical protein.)
genome : 85,898,228 - 85,900,338 (2,111)
query : 1 - 2,112 (2,112/2,179)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, extr 8, E.R._mito 8, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008985)
HIX0008986
HIT000204772 (
NM_014394
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,185 - 85,913,311 (14,127)
query : 1 - 2,449 (2,449/2,449)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000353414 (
ENST00000372134
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,196 - 85,913,001 (13,806)
query : 1 - 2,128 (2,128/2,128)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000494561
(
AK299937
)
(Growth hormone-inducible transmembrane protein.)
genome : 85,899,240 - 85,912,257 (13,018)
query : 1 - 1,301 (1,301/1,301)
10 exons
identity = 0.995
5'(1.000;0.943;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;1.000)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000066297
(
AF078863
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,258 - 85,913,311 (14,054)
query : 1 - 2,374 (2,374/2,374)
9 exons
identity = 0.997
5'(0.978;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;0.997)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000070825
(
AF131820
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,258 - 85,912,315 (13,058)
query : 1 - 1,380 (1,380/1,397)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000025309
(
AL136713
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,275 - 85,912,928 (13,654)
query : 1 - 1,976 (1,976/1,994)
9 exons
identity = 0.997
5'(1.000;0.994;0.990;1.000;0.993;0.991;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, golg 4, mito 2, pero 2, mito_pero 2,
cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000072130
(
AF161400
)
(Growth hormone-inducible transmembrane protein.)
genome : 85,899,276 - 85,908,520 (9,245)
query : 1 - 631 (631/631)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000049365
(
AK130094
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,282 - 85,912,300 (13,019)
query : 1 - 1,341 (1,341/1,341)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000090699
(
BC022872
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,304 - 85,912,309 (13,006)
query : 2 - 1,329 (1,328/1,357)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;0.991;1.000;1.000;1.000;
1.000;0.997)3'
coverage = 0.999
InterPro :
IPR006214 : Bax inhibitor 1-related
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R. 5, extr 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000384448
(
AK225318
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,308 - 85,912,243 (12,936)
query : 1 - 1,258 (1,258/1,258)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, golg 4, pero 2, cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000252868
(
AY358824
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,322 - 85,912,930 (13,609)
query : 13 - 1,943 (1,931/1,943)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 0.994
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000064923
(
AF060923
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,311 - 85,912,300 (12,990)
query : 1 - 1,312 (1,312/1,313)
9 exons
identity = 0.998
5'(1.000;0.994;0.990;1.000;1.000;1.000;0.995;
1.000;1.000)3'
coverage = 0.999
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000023600
(
AK098770
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,312 - 85,912,927 (13,616)
query : 1 - 1,878 (1,878/1,878)
9 exons
identity = 0.992
5'(1.000;1.000;1.000;0.867;0.953;1.000;1.000;
0.994;0.999)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, golg 4, pero 2, cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000492956
(
AK298332
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,312 - 85,912,564 (13,253)
query : 1 - 1,584 (1,584/1,584)
9 exons
identity = 0.999
5'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, golg 4, pero 2, cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000034892
(
BC010354
)
Representative transcript
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,315 - 85,912,930 (13,616)
query : 2 - 1,939 (1,938/1,968)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.998
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169162
Mus
sp. (Mouse) : AK134592
Rattus
sp. (Rat) : BC083778
Bos
sp. (Cow) : BC102813
Gallus
sp. (Chicken) : CR385556
Tetraodon
sp. (Tetraodon) : CR710812
Pongo
sp. (Orangutan) : CR861126
Oryzias
sp. (Medaka) : ENSORLT00000011735
Takifugu
sp. (Fugu) : SINFRUT00000181522
Pan
sp. (Chimpanzee) : XM_001148819
Monodelphis
sp. (Opossum) : XM_001365554
Equus
sp. (Horse) : XM_001501322
Canis
sp. (Dog) : XM_846854
HIX0008986
HIT000049368
(
AK130097
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,317 - 85,912,930 (13,614)
query : 1 - 1,936 (1,936/1,936)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000425661
(
AK292864
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,899,319 - 85,912,557 (13,239)
query : 3 - 1,563 (1,561/1,563)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 0.999
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000492584
(
AK297960
)
(Growth hormone-inducible transmembrane protein.)
genome : 85,899,318 - 85,912,395 (13,078)
query : 1 - 1,326 (1,326/1,326)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.989;
1.000;0.997)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000268367
(
CR533519
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,901,257 - 85,912,264 (11,008)
query : 1 - 1,198 (1,198/1,198)
8 exons
identity = 0.997
5'(0.992;0.990;1.000;0.993;0.991;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, golg 4, mito 2, pero 2, mito_pero 2,
cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000058191
(
AB009685
)
(Growth hormone-inducible transmembrane protein; Dermal papilla-derived protein 2; Mitochondrial morphology and cristae structure 1; MICS1; Transmembrane BAX inhibitor motif-containing protein 5; Precursor;)
genome : 85,901,257 - 85,912,104 (10,848)
query : 1 - 1,038 (1,038/1,038)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
IPR010539 : Bax inhibitor-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0008986
HIT000029232
(
AL834502
)
(Growth hormone-inducible transmembrane protein.)
genome : 85,910,579 - 85,913,078 (2,500)
query : 1 - 1,117 (1,117/1,160)
2 exons
identity = 0.994
5'(1.000;0.993)3'
coverage = 1.000
InterPro :
IPR006214 : Bax inhibitor 1-related
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 29, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008986)
HIX0035388
HIT000099402
(
BC051760
)
Representative transcript
(Conserved hypothetical protein.)
genome : 85,926,985 - 85,931,832 (4,848)
query : 1 - 1,856 (1,856/2,003)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 9, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035388)
HIX0035388
HIT000093214
(
BC033760
)
(Conserved hypothetical protein.)
genome : 85,926,985 - 85,931,724 (4,740)
query : 12 - 1,759 (1,748/1,776)
2 exons
identity = 0.998
3'(0.999;0.996)5'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 9, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035388)
HIX0035362
HIT000353406 (
ENST00000372126
)
(Conserved hypothetical protein.)
genome : 85,933,494 - 85,945,050 (11,557)
query : 1 - 888 (888/888)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035362)
HIX0035362
HIT000320376 (
NM_207373
)
(Conserved hypothetical protein.)
genome : 85,933,554 - 85,945,050 (11,497)
query : 1 - 828 (828/835)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.992
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035362)
HIX0035362
HIT000252795
(
AY358751
)
Representative transcript
(Conserved hypothetical protein.)
genome : 85,933,567 - 85,945,039 (11,473)
query : 1 - 804 (804/804)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035362)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AF152002
Mus
sp. (Mouse) : BC049685
Bos
sp. (Cow) : BC116082
Canis
sp. (Dog) : ENSCAFT00000025187
Pongo
sp. (Orangutan) : ENSPPYT00000002742
Pan
sp. (Chimpanzee) : XM_001154133
HIX0035362
HIT000389105
(
BC126978
)
(Conserved hypothetical protein.)
genome : 85,933,574 - 85,944,643 (11,070)
query : 1 - 401 (401/401)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035362)
HIX0035362
HIT000389123
(
BC126999
)
(Conserved hypothetical protein.)
genome : 85,933,574 - 85,944,643 (11,070)
query : 1 - 401 (401/401)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035362)
HIX0035362
HIT000576911 (
ENST00000472542
)
(Hypothetical short protein.)
genome : 85,936,274 - 85,945,040 (8,767)
query : 1 - 486 (486/486)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 10, nucl 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035362)
HIX0008987
HIT000563955
(
AB593154
)
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,954,391 - 85,975,391 (21,001)
query : 1 - 3,720 (3,720/3,720)
17 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr_plas 10, extr 8, pero 6, mito 3,
cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0008987
HIT000052069
(
BC038799
)
Representative transcript
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,954,406 - 85,979,375 (24,970)
query : 7 - 2,697 (2,691/2,773)
17 exons
identity = 0.999
5'(0.988;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 7, lyso 4, E.R. 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB053449
Mus
sp. (Mouse) : AB093300
Bos
sp. (Cow) : AF426392
Gallus
sp. (Chicken) : AF426394
Equus
sp. (Horse) : ENSECAT00000009941
Macaca
sp. (Macaque) : ENSMMUT00000000948
Oryzias
sp. (Medaka) : ENSORLT00000011781
Pongo
sp. (Orangutan) : ENSPPYT00000002741
Tetraodon
sp. (Tetraodon) : GSTENT00035904001
Takifugu
sp. (Fugu) : SINFRUT00000142429
Pan
sp. (Chimpanzee) : XM_001154192
Monodelphis
sp. (Opossum) : XM_001370964
Danio
sp. (Zebrafish) : XM_695668
Canis
sp. (Dog) : XM_848332
HIX0008987
HIT000563956
(
AB593155
)
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,954,405 - 85,977,119 (22,715)
query : 1 - 5,434 (5,434/5,434)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr_plas 10, extr 8, pero 6, mito 3,
cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0008987
HIT000128062 (
ENST00000332904
)
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,954,410 - 85,979,377 (24,968)
query : 1 - 2,690 (2,690/2,690)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 7, lyso 4, E.R. 3, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0008987
HIT000654865 (
NM_001171971
)
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,954,412 - 85,979,375 (24,964)
query : 1 - 2,686 (2,686/2,698)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 7, lyso 4, E.R. 3, pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0008987
HIT000211127 (
NM_033100
)
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,954,412 - 85,977,120 (22,709)
query : 1 - 5,428 (5,428/5,440)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr_plas 10, extr 8, pero 6, mito 3,
cyto_pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0008987
HIT000353397 (
ENST00000372117
)
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,954,414 - 85,977,122 (22,709)
query : 1 - 5,428 (5,428/5,428)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr_plas 10, extr 8, pero 6, mito 3,
cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0008987
HIT000001491
(
AB053448
)
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,954,518 - 85,976,281 (21,764)
query : 1 - 4,483 (4,483/4,483)
17 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996;1.000;0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr_plas 10, extr 8, pero 6, mito 3,
cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0008987
HIT000044625
(
AK124752
)
(Cadherin-related family member 1 isoform 2 precursor.)
genome : 85,962,734 - 85,977,119 (14,386)
query : 18 - 4,537 (4,520/4,537)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 0.996
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 9.5, E.R. 7, pero 4.5, nucl 3.5,
mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0008987
HIT000538704 (
ENST00000440770
)
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,962,734 - 85,977,119 (14,386)
query : 18 - 4,537 (4,520/4,537)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.996
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 9, E.R. 8, pero 4.5,
E.R._golg 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0008987
HIT000024309
(
AL080188
)
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,972,633 - 85,977,120 (4,488)
query : 1 - 3,755 (3,755/3,769)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
GO :
0005509 : Molecular Function : calcium ion binding
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, plas 5, pero 5, extr 4, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0008987
HIT000564633 (
ENST00000459673
)
(Cadherin-related family member 1; Photoreceptor cadherin; prCAD; Protocadherin-21; Precursor;)
genome : 85,972,633 - 85,977,122 (4,490)
query : 1 - 3,757 (3,757/3,757)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, plas 5, pero 5, extr 4, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008987)
HIX0026105
HIT000057171
(
BX648524
)
Representative transcript
(Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2; Leucine-rich repeat-containing protein 22; Precursor;)
genome : 85,980,241 - 85,985,284 (5,044)
query : 2 - 3,097 (3,096/3,221)
3 exons
identity = 0.999
3'(0.998;1.000;1.000)5'
coverage = 0.974
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR003598 : Immunoglobulin subtype 2
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
IPR020901 : Proteinase inhibitor I2, Kunitz, conserved site
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, lyso 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026105)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK044383
Danio
sp. (Zebrafish) : BC095086
Monodelphis
sp. (Opossum) : ENSMODT00000002148
Oryzias
sp. (Medaka) : ENSORLT00000011791
Pongo
sp. (Orangutan) : ENSPPYT00000002740
Tetraodon
sp. (Tetraodon) : GSTENT00016456001
Takifugu
sp. (Fugu) : SINFRUT00000148014
Rattus
sp. (Rat) : XM_001065544
Macaca
sp. (Macaque) : XM_001086426
Pan
sp. (Chimpanzee) : XM_001154419
Equus
sp. (Horse) : XM_001495826
Canis
sp. (Dog) : XM_546189
Gallus
sp. (Chicken) : XR_026892
HIX0026105
HIT000365521 (
NM_001017924
)
(Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2; Leucine-rich repeat-containing protein 22; Precursor;)
genome : 85,980,250 - 85,985,284 (5,035)
query : 1 - 3,087 (3,087/3,096)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, lyso 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026105)
HIX0026105
HIT000353393 (
ENST00000372113
)
(Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2; Leucine-rich repeat-containing protein 22; Precursor;)
genome : 85,980,327 - 85,985,282 (4,956)
query : 1 - 3,008 (3,008/3,008)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, lyso 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026105)
HIX0026105
HIT000501519
(
BC140765
)
(Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2; Leucine-rich repeat-containing protein 22; Precursor;)
genome : 85,981,047 - 85,985,345 (4,299)
query : 1 - 2,381 (2,381/2,381)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR003598 : Immunoglobulin subtype 2
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
IPR020901 : Proteinase inhibitor I2, Kunitz, conserved site
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, lyso 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026105)
HIX0026105
HIT000502885
(
BC144475
)
(Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2; Leucine-rich repeat-containing protein 22; Precursor;)
genome : 85,981,048 - 85,985,345 (4,298)
query : 1 - 2,380 (2,380/2,380)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR003598 : Immunoglobulin subtype 2
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
IPR020901 : Proteinase inhibitor I2, Kunitz, conserved site
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, lyso 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026105)
HIX0026105
HIT000637237 (
ENST00000538192
)
(Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2; Leucine-rich repeat-containing protein 22; Precursor;)
genome : 85,981,048 - 85,985,345 (4,298)
query : 1 - 2,380 (2,380/2,380)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, E.R. 5, lyso 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026105)
HIX0008988
HIT000205571 (
NM_015613
)
(Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1; Leucine-rich repeat-containing protein 21; Photoreceptor-associated LRR superfamily protein; Retina-specific protein PAL; Precursor;)
genome : 85,991,276 - 86,001,217 (9,942)
query : 1 - 2,301 (2,301/2,301)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, extr_plas 9, lyso 6, pero 5, plas 4, golg 3,
mito_pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008988)
HIX0008988
HIT000024296
(
AL080175
)
(Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1 precursor.)
genome : 85,991,349 - 85,992,648 (1,300)
query : 2 - 1,301 (1,300/1,310)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.999
InterPro :
IPR003961 : Fibronectin type III
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 8, plas 6.5, extr_plas 6, cyto_pero 6, extr 4.5,
cyto_mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008988)
HIX0008988
HIT000353385 (
ENST00000372105
)
(Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1; Leucine-rich repeat-containing protein 21; Photoreceptor-associated LRR superfamily protein; Retina-specific protein PAL; Precursor;)
genome : 85,991,349 - 86,001,217 (9,869)
query : 1 - 2,228 (2,228/2,228)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, extr_plas 9, lyso 6, pero 5, plas 4, golg 3,
mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008988)
HIX0008988
HIT000059036
(
AB031547
)
Representative transcript
(Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1; Leucine-rich repeat-containing protein 21; Photoreceptor-associated LRR superfamily protein; Retina-specific protein PAL; Precursor;)
genome : 85,991,478 - 86,001,217 (9,740)
query : 1 - 2,100 (2,100/2,100)
4 exons
identity = 0.997
3'(0.997;0.993;0.996;1.000)5'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR000483 : Cysteine-rich flanking region, C-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR003598 : Immunoglobulin subtype 2
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, extr_plas 9, lyso 6, pero 5, plas 4, golg 3,
mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008988)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB028461
Mus
sp. (Mouse) : AK044631
Danio
sp. (Zebrafish) : BC095674
Danio
sp. (Zebrafish) : BC117586
Bos
sp. (Cow) : ENSBTAT00000004470
Equus
sp. (Horse) : ENSECAT00000003261
Monodelphis
sp. (Opossum) : ENSMODT00000002158
Oryzias
sp. (Medaka) : ENSORLT00000008678
Pongo
sp. (Orangutan) : ENSPPYT00000002739
Tetraodon
sp. (Tetraodon) : GSTENT00035901001
Takifugu
sp. (Fugu) : SINFRUT00000142436
Macaca
sp. (Macaque) : XM_001086301
Pan
sp. (Chimpanzee) : XM_521533
Canis
sp. (Dog) : XM_546189
Bos
sp. (Cow) : XM_583320
Gallus
sp. (Chicken) : XR_026892
HIX0008988
HIT000391924
(
DQ426881
)
(Hypothetical protein.)
genome : 86,001,164 - 86,001,338 (175)
query : 1 - 175 (175/175)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto 6, cyto_nucl 6, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008988)
HIX0008988
HIT000391925
(
DQ426882
)
(Hypothetical protein.)
genome : 86,001,164 - 86,001,300 (137)
query : 1 - 137 (137/137)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, cyto 6.5, cyto_nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008988)
HIX0018538
HIT000312982 (
ENST00000359452
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,809 - 86,019,716 (14,908)
query : 1 - 2,247 (2,247/2,247)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000055576
(
BX641033
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,809 - 86,018,895 (14,087)
query : 1 - 2,588 (2,588/2,724)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000355 : Chemokine receptor family
IPR001793 : Retinal pigment epithelium GPCR
GO :
0004930 : Molecular Function : G-protein coupled receptor activity
0004950 : Molecular Function : chemokine receptor activity
0006935 : Biological Process : chemotaxis
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0007601 : Biological Process : visual perception
0007602 : Biological Process : phototransduction
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, cyto 1, E.R. 1, pero 1, lyso 1, cyto_pero 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000199795 (
NM_002921
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,809 - 86,018,944 (14,136)
query : 1 - 1,475 (1,475/1,475)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000365167 (
NM_001012720
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,809 - 86,018,944 (14,136)
query : 1 - 1,463 (1,463/1,463)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000365168 (
NM_001012722
)
(RPE-retinal G protein-coupled receptor isoform 3.)
genome : 86,004,809 - 86,018,944 (14,136)
query : 1 - 1,349 (1,349/1,349)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000218279
(
U14910
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,809 - 86,018,895 (14,087)
query : 1 - 1,414 (1,414/1,415)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;0.994;1.000;1.000;0.998)3'
coverage = 0.999
InterPro :
IPR000355 : Chemokine receptor family
IPR001793 : Retinal pigment epithelium GPCR
IPR027430 : Visual pigments (opsins) retinal binding site
GO :
0004930 : Molecular Function : G-protein coupled receptor activity
0004950 : Molecular Function : chemokine receptor activity
0006935 : Biological Process : chemotaxis
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0007601 : Biological Process : visual perception
0007602 : Biological Process : phototransduction
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000582822 (
ENST00000478727
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,809 - 86,018,338 (13,530)
query : 1 - 743 (743/743)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000573968 (
ENST00000469446
)
(RPE-retinal G protein-coupled receptor isoform 1.)
genome : 86,004,809 - 86,007,710 (2,902)
query : 1 - 481 (481/481)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, cyto 1, E.R. 1, pero 1, lyso 1, cyto_pero 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000587539 (
ENST00000483660
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,819 - 86,018,338 (13,520)
query : 1 - 690 (690/690)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, extr_plas 14.5, extr 2, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000091431
(
BC027987
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,845 - 86,018,895 (14,051)
query : 26 - 2,413 (2,388/2,448)
5 exons
identity = 0.998
5'(0.975;1.000;0.994;1.000;0.998)3'
coverage = 0.989
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000035211
(
BC011349
)
Representative transcript
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,835 - 86,019,716 (14,882)
query : 1 - 2,223 (2,223/2,238)
7 exons
identity = 0.997
5'(0.978;1.000;1.000;0.994;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR000355 : Chemokine receptor family
IPR001793 : Retinal pigment epithelium GPCR
IPR027430 : Visual pigments (opsins) retinal binding site
GO :
0004930 : Molecular Function : G-protein coupled receptor activity
0004950 : Molecular Function : chemokine receptor activity
0006935 : Biological Process : chemotaxis
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0007601 : Biological Process : visual perception
0007602 : Biological Process : phototransduction
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AY339627
Mus
sp. (Mouse) : BC082611
Danio
sp. (Zebrafish) : BC092971
Bos
sp. (Cow) : BC118188
Tetraodon
sp. (Tetraodon) : CR694500
Oryzias
sp. (Medaka) : ENSORLT00000008700
Pongo
sp. (Orangutan) : ENSPPYT00000002738
Pan
sp. (Chimpanzee) : ENSPTRT00000005090
Rattus
sp. (Rat) : ENSRNOT00000017038
Takifugu
sp. (Fugu) : SINFRUT00000148015
Macaca
sp. (Macaque) : XM_001086190
Equus
sp. (Horse) : XM_001495788
Canis
sp. (Dog) : XM_859687
HIX0018538
HIT000311858 (
ENST00000358110
)
(RPE-retinal G protein-coupled receptor isoform 3.)
genome : 86,004,835 - 86,019,715 (14,881)
query : 1 - 2,094 (2,094/2,094)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000033646
(
BC008094
)
(RPE-retinal G protein-coupled receptor isoform 1.)
genome : 86,004,842 - 86,010,667 (5,826)
query : 1 - 860 (860/877)
4 exons
identity = 0.988
5'(0.976;1.000;1.000;0.985)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000353372 (
ENST00000372092
)
(RPE-retinal G protein-coupled receptor isoform 1.)
genome : 86,004,842 - 86,010,667 (5,826)
query : 1 - 852 (852/868)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000097271
(
BC042536
)
(RPE-retinal G protein-coupled receptor isoform 1.)
genome : 86,004,843 - 86,008,504 (3,662)
query : 1 - 3,661 (3,661/3,712)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 14.5, cyto 8, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000587644 (
ENST00000483771
)
(RPE-retinal G protein-coupled receptor isoform 1.)
genome : 86,004,845 - 86,018,895 (14,051)
query : 1 - 2,502 (2,502/2,502)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 11, mito 10, plas 6, E.R._mito 6, cyto_mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
pHIT000082608 ( pHIT000082608 )
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,847 - 86,024,984 (20,138)
query : 1 - 1,023 (1,023/1,023)
8 exons
InterPro :
IPR000355 : Chemokine receptor family
IPR001793 : Retinal pigment epithelium GPCR
IPR027430 : Visual pigments (opsins) retinal binding site
GO :
0004930 : Molecular Function : G-protein coupled receptor activity
0004950 : Molecular Function : chemokine receptor activity
0006935 : Biological Process : chemotaxis
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0007601 : Biological Process : visual perception
0007602 : Biological Process : phototransduction
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
CAGE tag :
H39BB57L2404
HIX0018538
HIT000587618 (
ENST00000483744
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,007,461 - 86,014,187 (6,727)
query : 1 - 482 (482/482)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 17, extr 11, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000394665
(
DQ980610
)
(Non-protein coding transcript.)
genome : 86,008,679 - 86,008,735 (57)
query : 1 - 57 (57/57)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000600452 (
ENST00000497161
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,008,707 - 86,015,196 (6,490)
query : 1 - 669 (669/669)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000583771 (
ENST00000479725
)
(RPE-retinal G protein-coupled receptor;)
genome : 86,014,926 - 86,018,671 (3,746)
query : 1 - 747 (747/747)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, cyto 8, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018538
HIT000398671
(
U15790
)
(Conserved hypothetical protein.)
genome : 86,018,226 - 86,018,919 (694)
query : 1 - 694 (694/694)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
HIX0018449
HIT000013175
(
AK056561
)
Representative transcript
(Conserved hypothetical protein.)
genome : 86,039,736 - 86,054,415 (14,680)
query : 1 - 2,685 (2,685/2,685)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 7, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018449)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : XM_001149045
HIX0018449
HIT000513403 (
ENST00000415469
)
(Conserved hypothetical protein.)
genome : 86,039,736 - 86,054,415 (14,680)
query : 1 - 2,685 (2,685/2,685)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 7, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018449)
HIX0018449
HIT000660161 (
NR_038220
)
(Conserved hypothetical protein.)
genome : 86,039,736 - 86,054,415 (14,680)
query : 1 - 2,685 (2,685/2,685)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 7, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018449)
HIX0018449
HIT000535826 (
ENST00000437892
)
(Conserved hypothetical protein.)
genome : 86,039,747 - 86,048,751 (9,005)
query : 1 - 674 (674/674)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14.5, cyto 8.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018449)
HIX0018449
HIT000337983
(
BC104895
)
(Hypothetical protein.)
genome : 86,053,077 - 86,053,463 (387)
query : 1 - 387 (387/387)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018449)
HIX0018449
HIT000338009
(
BC104921
)
(Hypothetical protein.)
genome : 86,053,078 - 86,053,467 (390)
query : 1 - 390 (390/390)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 7, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018449)
HIX0026037
HIT000048358
(
AK128485
)
Representative transcript
(Receptor-type tyrosine-protein phosphatase C isoform 5 precursor.)
genome : 86,082,242 - 86,085,172 (2,931)
query : 1 - 2,928 (2,928/2,928)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, extr 7, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026037)
HIX0008990
HIT000313429 (
ENST00000359979
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,088,342 - 86,133,761 (45,420)
query : 1 - 2,066 (2,066/2,066)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16.5, nucl 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000207533 (
NM_018999
)
(Serine-rich coiled-coil domain-containing protein 2; Coiled-coil serine-rich protein 2; Protein GCAP14 homolog;)
genome : 86,088,410 - 86,278,276 (189,867)
query : 1 - 7,676 (7,676/7,676)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 16.5, nucl 12
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000103845 (
ENST00000224756
)
(Serine-rich coiled-coil domain-containing protein 2; Coiled-coil serine-rich protein 2; Protein GCAP14 homolog;)
genome : 86,088,419 - 86,278,273 (189,855)
query : 1 - 7,664 (7,664/7,664)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 16.5, nucl 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000353368 (
ENST00000372088
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,088,419 - 86,274,162 (185,744)
query : 1 - 3,468 (3,468/3,468)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 17, nucl 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000493590
(
AK298966
)
Representative transcript
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,088,419 - 86,274,162 (185,744)
query : 1 - 3,468 (3,468/3,468)
10 exons
identity = 0.999
5'(1.000;1.000;0.995;0.989;1.000;0.995;1.000;
1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 17, nucl 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK147383
Bos
sp. (Cow) : ENSBTAT00000023416
Equus
sp. (Horse) : ENSECAT00000014974
Monodelphis
sp. (Opossum) : ENSMODT00000013955
Takifugu
sp. (Fugu) : SINFRUT00000145684
Rattus
sp. (Rat) : XM_001061993
Macaca
sp. (Macaque) : XM_001085630
Pan
sp. (Chimpanzee) : XM_001155270
Danio
sp. (Zebrafish) : XM_001333814
Danio
sp. (Zebrafish) : XM_001920089
Gallus
sp. (Chicken) : XM_421492
Canis
sp. (Dog) : XM_536410
HIX0008990
HIT000041029
(
BC030528
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,088,447 - 86,133,761 (45,315)
query : 1 - 1,961 (1,961/1,989)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16.5, nucl 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000007598
(
AK024324
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,130,829 - 86,230,171 (99,343)
query : 4 - 2,175 (2,172/2,175)
7 exons
identity = 0.998
5'(0.998;1.000;1.000;1.000;1.000;1.000;0.977)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000002381
(
AF241785
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,131,060 - 86,278,272 (147,213)
query : 1 - 7,226 (7,226/7,248)
10 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 10, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000000845
(
AB032954
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,131,547 - 86,278,269 (146,723)
query : 1 - 6,737 (6,737/6,737)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto 4, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0190614
HIT000523499 (
ENST00000425565
)
(Ribosomal protein L11, N-terminal domain containing protein.)
genome : 86,148,926 - 86,149,382 (457)
query : 1 - 457 (457/457)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 11.8333, cyto_plas 10.1667,
extr 6, nucl 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0190614)
HIX0170753
HIT000521575 (
ENST00000423641
)
(Armadillo-like helical domain containing protein.)
genome : 86,150,664 - 86,151,801 (1,138)
query : 1 - 1,138 (1,138/1,138)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, extr 14, cyto_nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170753)
HIX0008990
HIT000023505
(
AK098675
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,153,609 - 86,274,161 (120,553)
query : 1 - 1,562 (1,562/1,562)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 13, cyto 9.5, extr 2, mito 2,
golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000597552 (
ENST00000494144
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,153,609 - 86,274,161 (120,553)
query : 1 - 1,562 (1,562/1,562)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 13, cyto 9.5, extr 2, mito 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000488945
(
AK294321
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,184,695 - 86,273,323 (88,629)
query : 1 - 934 (934/934)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto_nucl 9.5, nucl 9, cyto 8, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000642328 (
ENST00000543283
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,184,695 - 86,273,323 (88,629)
query : 1 - 934 (934/934)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto_nucl 9.5, nucl 9, cyto 8, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000597981 (
ENST00000494586
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,184,703 - 86,198,463 (13,761)
query : 1 - 461 (461/474)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.973
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, mito 10, cyto_nucl 9.5, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000596847 (
ENST00000493409
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,184,938 - 86,273,417 (88,480)
query : 1 - 878 (878/878)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13.5, cyto 12.5, extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000601526 (
ENST00000498300
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,198,299 - 86,273,458 (75,160)
query : 1 - 805 (805/805)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 14, nucl 8, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000584047 (
ENST00000480006
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,211,973 - 86,273,626 (61,654)
query : 1 - 772 (772/772)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 14, nucl 10, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000570774 (
ENST00000466105
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,211,973 - 86,273,452 (61,480)
query : 1 - 713 (713/713)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 7, nucl 4, mito 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0170972
HIT000536526 (
ENST00000438592
)
(CS domain containing protein.)
genome : 86,214,435 - 86,215,812 (1,378)
query : 1 - 684 (684/684)
3 exons
identity = 0.983
3'(1.000;0.875;0.984)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14, nucl 11.5, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170972)
HIX0008990
HIT000055240
(
BX640691
)
(Serine-rich coiled-coil domain-containing protein 2.)
genome : 86,230,164 - 86,278,270 (48,107)
query : 1 - 5,208 (5,208/5,226)
3 exons
identity = 0.998
5'(1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 11, nucl 4.5, extr 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000090297
(
BC020910
)
(Conserved hypothetical protein.)
genome : 86,237,356 - 86,274,163 (36,808)
query : 1 - 1,024 (1,024/1,053)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13, nucl 6, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0008990
HIT000222214
(
U90912
)
(Hypothetical protein.)
genome : 86,276,637 - 86,278,270 (1,634)
query : 1 - 1,634 (1,634/1,667)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 11, cyto_nucl 10.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008990)
HIX0057401
HIT000198013_03 (
NM_001006
)
(Ribosomal protein S3Ae family protein.)
genome : 86,320,175 - 86,321,062 (888)
query : 57 - 918 (862/950)
2 exons
identity = 0.972
5'(0.966;0.980)3'
coverage = 0.924
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 13.5, cyto 7.5, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057401)
HIX0057401
HIT000111110_03 (
ENST00000274065
)
(Ribosomal protein S3Ae family protein.)
genome : 86,320,175 - 86,321,062 (888)
query : 57 - 918 (862/934)
2 exons
identity = 0.972
5'(0.966;0.980)3'
coverage = 0.923
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 13.5, cyto 7.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057401)
HIX0057401
HIT000609584_04 (
ENST00000509736
)
(Ribosomal protein S3Ae family protein.)
genome : 86,320,175 - 86,321,062 (888)
query : 6 - 575 (570/576)
3 exons
identity = 0.974
5'(0.954;0.984;0.975)3'
coverage = 0.990
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 15, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057401)
HIX0057401
HIT000615224_04 (
ENST00000515818
)
(Ribosomal protein S3Ae family protein.)
genome : 86,320,175 - 86,320,849 (675)
query : 1 - 572 (572/572)
3 exons
identity = 0.967
5'(0.953;0.992;0.973)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 10.5, extr 7, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057401)
HIX0057401
HIT000612322_04 (
ENST00000512690
)
(Ribosomal protein S3Ae family protein.)
genome : 86,320,185 - 86,321,062 (878)
query : 1 - 844 (844/845)
2 exons
identity = 0.962
5'(0.966;0.958)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 14, cyto 4.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057401)
HIX0057401
HIT000482104_03 (
ENST00000398981
)
(Ribosomal protein S3Ae family protein.)
genome : 86,320,191 - 86,321,020 (830)
query : 1 - 804 (804/805)
2 exons
identity = 0.968
5'(0.959;0.981)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 14, cyto 5.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057401)
HIX0057401
HIT000396308 (
ENST00000389400
)
(Ribosomal protein S3Ae family protein.)
genome : 86,320,199 - 86,321,019 (821)
query : 1 - 786 (786/786)
2 exons
identity = 0.999
5'(1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 6, extr 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057401)
HIX0057401
HIT000588282_04 (
ENST00000484430
)
(Ribosomal protein S3Ae family protein.)
genome : 86,320,199 - 86,321,019 (821)
query : 1 - 795 (795/795)
2 exons
identity = 0.967
5'(0.959;0.981)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 14, cyto 5.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057401)
HIX0057401
HIT000607324_04 (
ENST00000507327
)
(Ribosomal protein S3Ae family protein.)
genome : 86,320,215 - 86,320,916 (702)
query : 1 - 674 (674/674)
2 exons
identity = 0.972
5'(0.964;0.990)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057401)
HIX0057401
HIT000615198_04 (
ENST00000515792
)
(Ribosomal protein S3Ae family protein.)
genome : 86,320,217 - 86,321,062 (846)
query : 1 - 670 (670/671)
3 exons
identity = 0.960
5'(0.981;0.894;0.980)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057401)
HIX0170540
HIT000465319_03
(
DQ598788
)
Representative transcript
(Non-protein coding transcript.)
genome : 86,445,558 - 86,445,587 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170540)
HIX0170541
HIT000465319_04
(
DQ598788
)
Representative transcript
(Non-protein coding transcript.)
genome : 86,446,667 - 86,446,696 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170541)
HIX0008992
HIT000022478
(
AK097624
)
Representative transcript
(Conserved hypothetical protein.)
genome : 86,953,177 - 86,957,714 (4,538)
query : 19 - 2,047 (2,029/2,047)
3 exons
identity = 0.999
3'(0.999;0.999;1.000)5'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008992)
HIX0008992
HIT000552112 (
ENST00000454178
)
(Conserved hypothetical protein.)
genome : 86,953,177 - 86,957,714 (4,538)
query : 1 - 2,029 (2,029/2,029)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 8.5, cyto_mito 6, cyto 2.5, E.R. 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008992)
HIX0018538
pHIT000082608 ( pHIT000082608 )
(RPE-retinal G protein-coupled receptor;)
genome : 86,004,847 - 86,024,984 (20,138)
query : 1 - 1,023 (1,023/1,023)
8 exons
InterPro :
IPR000355 : Chemokine receptor family
IPR001793 : Retinal pigment epithelium GPCR
IPR027430 : Visual pigments (opsins) retinal binding site
GO :
0004930 : Molecular Function : G-protein coupled receptor activity
0004950 : Molecular Function : chemokine receptor activity
0006935 : Biological Process : chemotaxis
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0007601 : Biological Process : visual perception
0007602 : Biological Process : phototransduction
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018538)
CAGE tag :
H39BA86G0902,H39BB07L1215,H39BB09C2302
H39BB47O2104,H39BB57L2404
AC069540.6
85500001-85615813 F -
NCBI
AL390786.15
85615814-85718525 F +
NCBI
AC022394.7
85718526-85870589 F +
NCBI
AL603756.8
85870590-85903342 F +
NCBI
AC022389.9
85903343-86056547 F +
NCBI
AC074321.10
86056548-86233750 F -
NCBI
AL356115.9
86233751-86333592 F +
NCBI
AL389916.15
86333593-86400159 F +
NCBI
AL591128.7
86400160-86455140 F +
NCBI
AL590136.7
86455141-86514009 F +
NCBI
AC091487.10
86514010-86727217 F -
NCBI
AL357394.11
86727218-86875295 F +
NCBI
AL358787.12
86875296-86991329 F +
NCBI
AL596267.5
86991330-86993323 F +
NCBI
AL500526.13
86993324-87051651 F +
NCBI
AC025428.10
87051652-87100000 F +
NCBI