bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0008775
HIT000207991 (
NM_020630
)
(Proto-oncogene tyrosine-protein kinase receptor Ret; EC=2.7.10.1; Cadherin family member 12; Proto-oncogene c-Ret; Contains: Soluble RET kinase fragment; Contains: Extracellular cell-membrane anchored RET cadherin 120 kDa fragment; Precursor;)
genome : 43,572,517 - 43,622,952 (50,436)
query : 1 - 4,159 (4,159/4,174)
19 exons
identity = 0.999
5'(1.000;0.996;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, extr_plas 13, extr 8, pero 4, E.R._golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
HIX0008775
HIT000602028 (
ENST00000498820
)
(Proto-oncogene tyrosine-protein kinase receptor Ret; EC=2.7.10.1; Cadherin family member 12; Proto-oncogene c-Ret; Contains: Soluble RET kinase fragment; Contains: Extracellular cell-membrane anchored RET cadherin 120 kDa fragment; Precursor;)
genome : 43,572,522 - 43,610,041 (37,520)
query : 1 - 729 (729/729)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20, extr 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
HIX0008775
HIT000132688 (
ENST00000340058
)
(Proto-oncogene tyrosine-protein kinase receptor Ret; EC=2.7.10.1; Cadherin family member 12; Proto-oncogene c-Ret; Contains: Soluble RET kinase fragment; Contains: Extracellular cell-membrane anchored RET cadherin 120 kDa fragment; Precursor;)
genome : 43,572,527 - 43,622,952 (50,426)
query : 1 - 4,149 (4,149/4,149)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, extr_plas 13, extr 8, pero 4, E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
HIX0008775
HIT000031824
(
BC004257
)
Representative transcript
(Proto-oncogene tyrosine-protein kinase receptor Ret isoform c precursor.)
genome : 43,572,527 - 43,622,270 (49,744)
query : 1 - 3,467 (3,467/3,486)
19 exons
identity = 0.998
5'(1.000;0.996;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.996;1.000;0.991;1.000;
0.992;1.000;1.000;0.990;0.996)3'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR002126 : Cadherin
IPR008266 : Tyrosine-protein kinase, active site
IPR015919 : Cadherin-like
IPR020635 : Tyrosine-protein kinase, catalytic domain
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0005509 : Molecular Function : calcium ion binding
0006468 : Biological Process : protein phosphorylation
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, extr_plas 13, extr 8, pero 4, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
HIX0008775
HIT000031405
(
BC003072
)
(Proto-oncogene tyrosine-protein kinase receptor Ret; EC=2.7.10.1; Cadherin family member 12; Proto-oncogene c-Ret; Contains: Soluble RET kinase fragment; Contains: Extracellular cell-membrane anchored RET cadherin 120 kDa fragment; Precursor;)
genome : 43,572,527 - 43,622,270 (49,744)
query : 1 - 2,193 (2,193/2,210)
13 exons
identity = 0.995
5'(1.000;0.996;1.000;1.000;1.000;1.000;0.895;
0.889;0.992;1.000;1.000;0.990;0.996)3'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
GO :
0005509 : Molecular Function : calcium ion binding
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, lyso 7, golg 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
HIX0008775
HIT000321497
(
X15262
)
(Proto-oncogene tyrosine-protein kinase receptor Ret; EC=2.7.10.1; Cadherin family member 12; Proto-oncogene c-Ret; Contains: Soluble RET kinase fragment; Contains: Extracellular cell-membrane anchored RET cadherin 120 kDa fragment; Precursor;)
genome : 43,572,558 - 43,600,614 (28,057)
query : 1 - 989 (989/989)
4 exons
identity = 0.999
5'(1.000;0.996;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
GO :
0005509 : Molecular Function : calcium ion binding
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
HIX0008775
HIT000424604
(
AK291807
)
(Proto-oncogene tyrosine-protein kinase receptor Ret isoform c precursor.)
genome : 43,572,647 - 43,622,269 (49,623)
query : 1 - 3,346 (3,346/3,346)
19 exons
identity = 0.999
5'(1.000;0.996;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.996;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR002126 : Cadherin
IPR008266 : Tyrosine-protein kinase, active site
IPR015919 : Cadherin-like
IPR020635 : Tyrosine-protein kinase, catalytic domain
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0005509 : Molecular Function : calcium ion binding
0006468 : Biological Process : protein phosphorylation
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, extr_plas 12.5, extr 7, pero 4, E.R. 2.5,
E.R._golg 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AF007949
Mus
sp. (Mouse) : AF209436
Rattus
sp. (Rat) : AJ299016
Bos
sp. (Cow) : BC149315
Canis
sp. (Dog) : DQ366292
Equus
sp. (Horse) : ENSECAT00000004122
Monodelphis
sp. (Opossum) : ENSMODT00000001481
Oryzias
sp. (Medaka) : ENSORLT00000017509
Pongo
sp. (Orangutan) : ENSPPYT00000002656
Pan
sp. (Chimpanzee) : ENSPTRT00000004535
Tetraodon
sp. (Tetraodon) : GSTENT00024538001
Takifugu
sp. (Fugu) : SINFRUT00000131161
Macaca
sp. (Macaque) : XR_012039
Gallus
sp. (Chicken) : Z49898
HIX0008775
HIT000325714
(
Y12528
)
(Proto-oncogene tyrosine-protein kinase receptor Ret; EC=2.7.10.1; Cadherin family member 12; Proto-oncogene c-Ret; Contains: Soluble RET kinase fragment; Contains: Extracellular cell-membrane anchored RET cadherin 120 kDa fragment; Precursor;)
genome : 43,572,707 - 43,596,103 (23,397)
query : 1 - 270 (270/270)
2 exons
identity = 0.996
5'(1.000;0.995)3'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, E.R. 2, golg 2, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
HIX0008775
HIT000321334
(
X12949
)
(Proto-oncogene tyrosine-protein kinase receptor Ret; EC=2.7.10.1; Cadherin family member 12; Proto-oncogene c-Ret; Contains: Soluble RET kinase fragment; Contains: Extracellular cell-membrane anchored RET cadherin 120 kDa fragment; Precursor;)
genome : 43,595,955 - 43,624,949 (28,995)
query : 48 - 4,508 (4,461/4,508)
19 exons
identity = 0.994
5'(0.905;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;1.000;1.000;1.000;0.991;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 0.990
EC number :
EC 2.7.10.1
InterPro :
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR008266 : Tyrosine-protein kinase, active site
IPR020635 : Tyrosine-protein kinase, catalytic domain
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0006468 : Biological Process : protein phosphorylation
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8, cyto 7, nucl 6, pero 4.5, cyto_plas 4.5,
mito_pero 4, E.R._golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
HIX0008775
HIT000583956 (
ENST00000479913
)
(Proto-oncogene tyrosine-protein kinase receptor Ret; EC=2.7.10.1; Cadherin family member 12; Proto-oncogene c-Ret; Contains: Soluble RET kinase fragment; Contains: Extracellular cell-membrane anchored RET cadherin 120 kDa fragment; Precursor;)
genome : 43,600,180 - 43,601,938 (1,759)
query : 1 - 577 (577/577)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 10, cyto 4, pero 4, cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
HIX0008775
HIT000489451
(
AK294827
)
(Proto-oncogene tyrosine-protein kinase receptor Ret; EC=2.7.10.1; Cadherin family member 12; Proto-oncogene c-Ret; Contains: Soluble RET kinase fragment; Contains: Extracellular cell-membrane anchored RET cadherin 120 kDa fragment; Precursor;)
genome : 43,600,364 - 43,622,559 (22,196)
query : 2 - 2,988 (2,987/2,988)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;0.996;1.000;1.000;1.000;
1.000;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;0.996)3'
coverage = 1.000
EC number :
EC 2.7.10.1
InterPro :
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR008266 : Tyrosine-protein kinase, active site
IPR020635 : Tyrosine-protein kinase, catalytic domain
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0006468 : Biological Process : protein phosphorylation
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8, nucl 6, cyto 6, cyto_nucl 6, pero 4.5,
cyto_plas 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008775)
HIX0218982
HIT000249448
(
AJ844649
)
Representative transcript
(Hypothetical protein.)
genome : 43,625,302 - 43,625,508 (207)
query : 1 - 207 (207/207)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218982)
HIX0218861
HIT000355744 (
ENST00000374464
)
(Chondroitin N-acetylgalactosaminyltransferase family protein.)
genome : 43,633,934 - 43,656,048 (22,115)
query : 1 - 1,320 (1,320/1,337)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.991)3'
coverage = 0.987
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, mito 7, pero 4, E.R. 2, golg 2, cyto_pero 2,
E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218861)
HIX0218861
HIT000067337
(
AF086458
)
Representative transcript
(Conserved hypothetical protein.)
genome : 43,650,344 - 43,650,857 (514)
query : 21 - 534 (514/543)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.963
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 23.5, cyto_mito 13, lyso 2, extr_plas 2,
plas 1.5, extr 1.5, cyto 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218861)
HIX0218815
HIT000055614
(
BX641073
)
Representative transcript
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,657,901 - 43,680,748 (22,848)
query : 1 - 3,819 (3,819/3,839)
4 exons
identity = 0.998
5'(0.999;1.000;0.988;0.998)3'
coverage = 1.000
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
InterPro :
IPR008428 : Chondroitin N-acetylgalactosaminyltransferase
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0016758 : Molecular Function : transferase activity, transferring hexosyl groups
0032580 : Cellular Component : Golgi cisterna membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 5, mito 5, cyto_mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218815)
HIX0218815
HIT000015254
(
AK074474
)
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,659,306 - 43,680,748 (21,443)
query : 1 - 2,415 (2,415/2,448)
4 exons
identity = 1.000
5'(1.000;1.000;0.988;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
InterPro :
IPR008428 : Chondroitin N-acetylgalactosaminyltransferase
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0016758 : Molecular Function : transferase activity, transferring hexosyl groups
0032580 : Cellular Component : Golgi cisterna membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, extr 14, cyto_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218815)
HIX0218815
HIT000056016
(
BX647369
)
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,666,692 - 43,680,745 (14,054)
query : 1 - 6,833 (6,833/6,863)
2 exons
identity = 0.998
5'(0.998;0.999)3'
coverage = 1.000
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
InterPro :
IPR008428 : Chondroitin N-acetylgalactosaminyltransferase
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0016758 : Molecular Function : transferase activity, transferring hexosyl groups
0032580 : Cellular Component : Golgi cisterna membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218815)
HIX0218815
HIT000069982
(
AF116646
)
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,671,398 - 43,680,741 (9,344)
query : 12 - 2,138 (2,127/2,286)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 0.995
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
InterPro :
IPR008428 : Chondroitin N-acetylgalactosaminyltransferase
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0016758 : Molecular Function : transferase activity, transferring hexosyl groups
0032580 : Cellular Component : Golgi cisterna membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218815)
HIX0218815
HIT000637274_01 (
ENST00000538229
)
(Hypothetical protein.)
genome : 43,678,828 - 43,678,990 (163)
query : 3 - 165 (163/165)
1 exon
identity = 0.975
5'(0.975)3'
coverage = 0.988
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto_nucl 4.5, nucl 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218815)
HIX0218815
HIT000637983_01 (
ENST00000538938
)
(Hypothetical protein.)
genome : 43,678,826 - 43,678,990 (165)
query : 1 - 165 (165/165)
1 exon
identity = 0.982
5'(0.982)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 9, extr_plas 9, nucl 6.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218815)
HIX0008777
HIT000039622
(
BC022548
)
(Ras-GEF domain-containing family member 1A;)
genome : 43,689,984 - 43,762,367 (72,384)
query : 1 - 3,238 (3,238/3,254)
13 exons
identity = 0.996
3'(0.995;0.986;1.000;1.000;1.000;1.000;1.000;
0.987;1.000;1.000;1.000;0.995;0.987)5'
coverage = 1.000
InterPro :
IPR000651 : Ras-like guanine nucleotide exchange factor, N-terminal
IPR001895 : Ras guanine-nucleotide exchange factors catalytic domain
IPR023578 : Ras guanine nucleotide exchange factor domain
GO :
0005085 : Molecular Function : guanyl-nucleotide exchange factor activity
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
0051056 : Biological Process : regulation of small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 8.5, cyto_nucl 7.5, cyto 5.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008777)
HIX0008777
HIT000019991
(
AK095136
)
Representative transcript
(Ras-GEF domain-containing family member 1A;)
genome : 43,689,983 - 43,725,187 (35,205)
query : 1 - 3,266 (3,266/3,266)
13 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000651 : Ras-like guanine nucleotide exchange factor, N-terminal
IPR001895 : Ras guanine-nucleotide exchange factors catalytic domain
IPR023578 : Ras guanine nucleotide exchange factor domain
GO :
0005085 : Molecular Function : guanyl-nucleotide exchange factor activity
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
0051056 : Biological Process : regulation of small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 10, pero 5, cyto_plas 5, cyto_golg 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008777)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ719758
Mus
sp. (Mouse) : AK158756
Danio
sp. (Zebrafish) : BC078340
Bos
sp. (Cow) : BT020843
Equus
sp. (Horse) : ENSECAT00000026552
Macaca
sp. (Macaque) : ENSMMUT00000021596
Oryzias
sp. (Medaka) : ENSORLT00000014432
Pongo
sp. (Orangutan) : ENSPPYT00000002662
Pan
sp. (Chimpanzee) : ENSPTRT00000004545
Rattus
sp. (Rat) : ENSRNOT00000051804
Tetraodon
sp. (Tetraodon) : GSTENT00024761001
Takifugu
sp. (Fugu) : SINFRUT00000138431
Monodelphis
sp. (Opossum) : XM_001365016
Canis
sp. (Dog) : XM_534955
HIX0008777
HIT000355739 (
ENST00000374459
)
(Ras-GEF domain-containing family member 1A;)
genome : 43,689,983 - 43,725,187 (35,205)
query : 1 - 3,264 (3,264/3,264)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 10, pero 5, cyto_plas 5, cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008777)
HIX0008777
HIT000213215 (
NM_145313
)
(Ras-GEF domain-containing family member 1A;)
genome : 43,689,984 - 43,762,367 (72,384)
query : 1 - 3,235 (3,235/3,235)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 8.5, cyto_nucl 7.5, cyto 5.5, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008777)
HIX0008777
HIT000479175 (
ENST00000395810
)
(Ras-GEF domain-containing family member 1A;)
genome : 43,689,984 - 43,762,367 (72,384)
query : 1 - 3,235 (3,235/3,235)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 8.5, cyto_nucl 7.5, cyto 5.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008777)
HIX0008777
HIT000047305
(
AK127432
)
(Ras-GEF domain-containing family member 1A;)
genome : 43,691,541 - 43,704,632 (13,092)
query : 1 - 4,104 (4,104/4,104)
13 exons
identity = 0.999
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.990;1.000)5'
coverage = 1.000
InterPro :
IPR000651 : Ras-like guanine nucleotide exchange factor, N-terminal
IPR001895 : Ras guanine-nucleotide exchange factors catalytic domain
IPR023578 : Ras guanine nucleotide exchange factor domain
GO :
0005085 : Molecular Function : guanyl-nucleotide exchange factor activity
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
0051056 : Biological Process : regulation of small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 11, cyto 8.5, extr 6, plas 2,
pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008777)
HIX0008777
HIT000479174 (
ENST00000395809
)
(Ras-GEF domain-containing family member 1A;)
genome : 43,691,541 - 43,704,632 (13,092)
query : 1 - 4,104 (4,104/4,104)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 8.5, cyto_nucl 7.5, cyto 5.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008777)
HIX0008777
HIT000355735 (
ENST00000374455
)
(Ras-GEF domain-containing family member 1A.)
genome : 43,694,564 - 43,698,130 (3,567)
query : 1 - 632 (632/632)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, mito 10, extr 7, nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008777)
HIX0008777
HIT000577221 (
ENST00000472864
)
(Ras-GEF domain-containing family member 1A.)
genome : 43,695,643 - 43,699,267 (3,625)
query : 1 - 753 (753/753)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25.5, cyto_nucl 14, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008777)
HIX0026002
HIT000045850
(
AK125977
)
Representative transcript
(Retroviral envelope protein domain containing protein.)
genome : 43,794,544 - 43,797,616 (3,073)
query : 1 - 3,073 (3,073/3,073)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
InterPro :
IPR000328 : Retroviral envelope protein
GO :
0005198 : Molecular Function : structural molecule activity
0019031 : Cellular Component : viral envelope
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026002)
HIX0171155
HIT000549372 (
ENST00000451438
)
(Hypothetical short protein.)
genome : 43,819,113 - 43,823,380 (4,268)
query : 1 - 391 (391/391)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171155)
HIX0170570
HIT000506633 (
ENST00000408541
)
(Hypothetical short protein.)
genome : 43,837,234 - 43,837,358 (125)
query : 1 - 125 (125/125)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170570)
HIX0008778
HIT000007853
(
AK024579
)
Representative transcript
(Conserved hypothetical protein.)
genome : 43,856,973 - 43,858,684 (1,712)
query : 1 - 1,713 (1,713/1,713)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto_nucl 7, nucl 5.5, cyto 5.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008778)
HIX0128192
HIT000467219
(
DQ600688
)
Representative transcript
(Non-protein coding transcript.)
genome : 43,858,945 - 43,858,975 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0128192)
HIX0026085
HIT000054098
(
BC054876
)
Representative transcript
(FXYD domain-containing ion transport regulator 4; Precursor;)
genome : 43,867,090 - 43,871,781 (4,692)
query : 5 - 775 (771/805)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.995)3'
coverage = 0.991
InterPro :
IPR000272 : Ion-transport regulator, FXYD motif
GO :
0005216 : Molecular Function : ion channel activity
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026085)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC086918
Canis
sp. (Dog) : ENSCAFT00000038542
Pongo
sp. (Orangutan) : ENSPPYT00000002663
Rattus
sp. (Rat) : L41254
Macaca
sp. (Macaque) : XM_001109347
Pan
sp. (Chimpanzee) : XM_001155828
Monodelphis
sp. (Opossum) : XM_001369371
Bos
sp. (Cow) : XM_583436
HIX0026085
HIT000580376 (
ENST00000476166
)
(FXYD domain-containing ion transport regulator 4; Precursor;)
genome : 43,867,090 - 43,871,780 (4,691)
query : 1 - 770 (770/770)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026085)
HIX0026085
HIT000214793 (
NM_173160
)
(FXYD domain-containing ion transport regulator 4; Precursor;)
genome : 43,867,092 - 43,871,783 (4,692)
query : 1 - 771 (771/787)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026085)
HIX0026085
HIT000252628
(
AY358584
)
(FXYD domain-containing ion transport regulator 4; Precursor;)
genome : 43,867,092 - 43,871,783 (4,692)
query : 1 - 635 (635/636)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.975;
1.000;1.000)3'
coverage = 0.998
InterPro :
IPR000272 : Ion-transport regulator, FXYD motif
GO :
0005216 : Molecular Function : ion channel activity
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026085)
HIX0026085
HIT000655500 (
NM_001184963
)
(FXYD domain-containing ion transport regulator 4; Precursor;)
genome : 43,867,092 - 43,871,783 (4,692)
query : 1 - 635 (635/636)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026085)
HIX0026085
HIT000584828 (
ENST00000480834
)
(FXYD domain-containing ion transport regulator 4; Precursor;)
genome : 43,867,101 - 43,871,780 (4,680)
query : 1 - 490 (490/490)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 20, plas 5, extr 3, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026085)
HIX0026085
HIT000583265 (
ENST00000479189
)
(Hypothetical short protein.)
genome : 43,869,917 - 43,871,783 (1,867)
query : 1 - 328 (328/328)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, nucl 1.5, cyto_nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026085)
HIX0008779
HIT000485165 (
NM_001098204
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,904,696 (23,632)
query : 1 - 2,632 (2,632/2,650)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000201686 (
NM_004966
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,904,656 (23,592)
query : 1 - 2,633 (2,633/2,651)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000485166 (
NM_001098205
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,904,332 (23,268)
query : 1 - 2,672 (2,672/2,690)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000485167 (
NM_001098206
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,903,299 (22,235)
query : 1 - 2,649 (2,649/2,667)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000485168 (
NM_001098207
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,892,794 (11,730)
query : 1 - 2,676 (2,676/2,694)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000485169 (
NM_001098208
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,892,279 (11,215)
query : 1 - 2,755 (2,755/2,773)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000003838
(
AK001364
)
Representative transcript
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,904,330 (23,266)
query : 1 - 2,670 (2,670/2,670)
4 exons
identity = 0.998
3'(0.998;1.000;1.000;0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB168246
Mus
sp. (Mouse) : BC023793
Bos
sp. (Cow) : BC102955
Rattus
sp. (Rat) : BC103634
Oryzias
sp. (Medaka) : ENSORLT00000013162
Pongo
sp. (Orangutan) : ENSPPYT00000002664
Pan
sp. (Chimpanzee) : XM_001156395
Equus
sp. (Horse) : XM_001490019
Canis
sp. (Dog) : XM_851801
HIX0008779
HIT000310111 (
ENST00000356053
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,904,330 (23,266)
query : 1 - 2,670 (2,670/2,670)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000310968 (
ENST00000357065
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,903,267 (22,203)
query : 1 - 2,617 (2,617/2,617)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000643045 (
ENST00000544000
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,892,794 (11,730)
query : 1 - 2,676 (2,676/2,676)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000541884 (
ENST00000443950
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,065 - 43,892,279 (11,215)
query : 1 - 2,755 (2,755/2,755)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000030409
(
BC001432
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,295 - 43,891,951 (10,657)
query : 1 - 2,197 (2,197/2,233)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
IPR012996 : Zinc finger, CHHC-type
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000037659
(
BC016736
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,309 - 43,903,267 (21,959)
query : 5 - 2,377 (2,373/2,407)
4 exons
identity = 0.998
3'(0.999;1.000;1.000;0.990)5'
coverage = 0.997
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
IPR012996 : Zinc finger, CHHC-type
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 14, nucl 12, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000338374
(
BC106008
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,471 - 43,892,678 (11,208)
query : 1 - 2,154 (2,154/2,205)
4 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
IPR012996 : Zinc finger, CHHC-type
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000059879
(
AB062287
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,471 - 43,882,400 (930)
query : 1 - 930 (930/964)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 13, cyto 11, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000031821
(
BC004254
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,471 - 43,904,614 (23,144)
query : 1 - 2,185 (2,185/2,206)
4 exons
identity = 0.999
3'(0.999;1.000;0.993;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
IPR012996 : Zinc finger, CHHC-type
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000037199
(
BC015580
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,471 - 43,904,612 (23,142)
query : 1 - 2,142 (2,142/2,159)
4 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
IPR012996 : Zinc finger, CHHC-type
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000192741
(
L28010
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,470 - 43,883,357 (1,888)
query : 4 - 1,889 (1,886/1,902)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.992
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
IPR012996 : Zinc finger, CHHC-type
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000130718 (
ENST00000337970
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,881,470 - 43,904,614 (23,145)
query : 1 - 2,186 (2,186/2,186)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000491320
(
AK296696
)
(Heterogeneous nuclear ribonucleoprotein H3; hnRNP H3; Heterogeneous nuclear ribonucleoprotein 2H9; hnRNP 2H9;)
genome : 43,881,756 - 43,904,633 (22,878)
query : 1 - 1,762 (1,762/1,762)
5 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
IPR012996 : Zinc finger, CHHC-type
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 15.5, cyto 11, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000581266 (
ENST00000477108
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,883,037 - 43,892,726 (9,690)
query : 1 - 636 (636/636)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0008779
HIT000601410 (
ENST00000498176
)
(Heterogeneous nuclear ribonucleoprotein F; hnRNP F; Nucleolin-like protein mcs94-1; Contains: Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;)
genome : 43,883,091 - 43,892,265 (9,175)
query : 1 - 715 (715/715)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008779)
HIX0171029
HIT000540460 (
ENST00000442526
)
(Conserved hypothetical protein.)
genome : 43,916,186 - 43,917,548 (1,363)
query : 1 - 760 (760/760)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 8, extr 4, cyto_mito 4, cyto_pero 4,
cyto_plas 4, cyto_golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171029)
HIX0034125
HIT000529596 (
ENST00000431662
)
(Zinc finger protein 12 isoform b.)
genome : 43,932,282 - 43,991,517 (59,236)
query : 1 - 1,347 (1,347/1,347)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
HIX0034125
HIT000120510 (
ENST00000315429
)
(Zinc finger protein 37A.)
genome : 43,932,289 - 43,977,126 (44,838)
query : 1 - 568 (568/568)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 8, cyto 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
HIX0034125
HIT000535524 (
ENST00000437590
)
(Zinc finger protein 84.)
genome : 43,932,574 - 43,978,627 (46,054)
query : 1 - 2,111 (2,111/2,111)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 5, cyto 4.5, cyto_nucl 4, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
HIX0034125
HIT000497066
(
AK302442
)
Representative transcript
(Zinc finger protein 33A isoform d.)
genome : 43,932,574 - 43,978,007 (45,434)
query : 1 - 1,491 (1,491/1,491)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 5, cyto 4.5, cyto_nucl 4, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
Ortholog candidate ( ->
Evola
)
Monodelphis
sp. (Opossum) : ENSMODT00000029617
Pongo
sp. (Orangutan) : ENSPPYT00000002665
Macaca
sp. (Macaque) : XR_013699
HIX0034125
HIT000562890 (
NR_026693
)
(Zinc finger protein 33A isoform d.)
genome : 43,932,574 - 43,978,007 (45,434)
query : 1 - 1,491 (1,491/1,491)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 5, cyto 4.5, cyto_nucl 4, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
HIX0034125
HIT000554350 (
ENST00000456416
)
(Zinc finger protein 37A.)
genome : 43,932,574 - 43,977,179 (44,606)
query : 1 - 567 (567/567)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 4.5, cyto_nucl 4, mito 3, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
HIX0034125
HIT000593776 (
ENST00000490208
)
(Conserved hypothetical protein.)
genome : 43,932,596 - 43,949,980 (17,385)
query : 1 - 583 (583/583)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
HIX0034125
HIT000549101 (
ENST00000451167
)
(Zinc finger protein 300 isoform 1.)
genome : 43,932,606 - 43,971,278 (38,673)
query : 1 - 240 (240/240)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 6.66667, nucl 5.5, cyto 4.5,
cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
HIX0034125
HIT000047323
(
AK127450
)
(Conserved hypothetical protein.)
genome : 43,946,231 - 43,950,100 (3,870)
query : 1 - 3,868 (3,868/3,868)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 14.5, extr_plas 14, extr 12.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
HIX0034125
HIT000026972
(
AL832060
)
(Conserved hypothetical protein.)
genome : 43,947,368 - 43,950,112 (2,745)
query : 1 - 2,742 (2,742/2,767)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, mito 8, cyto_nucl 4.66667, mito_pero 4.66667,
nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
HIX0034125
HIT000708056 (
ENST00000596267
)
(Conserved hypothetical protein.)
genome : 43,947,368 - 43,950,112 (2,745)
query : 1 - 2,745 (2,745/2,745)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034125)
HIX0035634
HIT000098465
(
BC047104
)
Representative transcript
(Conserved hypothetical protein.)
genome : 43,987,280 - 43,989,136 (1,857)
query : 3 - 1,862 (1,860/1,877)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035634)
HIX0201564
HIT000519847 (
ENST00000421913
)
(Conserved hypothetical protein.)
genome : 44,018,704 - 44,020,665 (1,962)
query : 1 - 1,962 (1,962/1,962)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, mito_pero 8, mito 7, pero 7, plas 3, extr 2,
nucl 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201564)
HIX0008780
HIT000485346 (
NM_001099283
)
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,794 - 44,070,066 (18,273)
query : 1 - 1,905 (1,905/1,924)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000485347 (
NM_001099284
)
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,794 - 44,070,066 (18,273)
query : 1 - 2,028 (2,028/2,047)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000485345 (
NM_001099282
)
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,794 - 44,070,065 (18,272)
query : 1 - 2,068 (2,068/2,087)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000040073
(
BC026030
)
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,794 - 44,069,127 (17,334)
query : 21 - 2,012 (1,992/2,031)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 0.990
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000202347 (
NM_005674
)
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,794 - 44,063,907 (12,114)
query : 1 - 2,387 (2,387/2,406)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000355726 (
ENST00000374446
)
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,792 - 44,070,032 (18,241)
query : 1 - 2,037 (2,037/2,037)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000117208 (
ENST00000306006
)
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,792 - 44,063,907 (12,116)
query : 1 - 2,389 (2,389/2,389)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000524895 (
ENST00000426961
)
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,795 - 44,070,066 (18,272)
query : 1 - 2,027 (2,027/2,027)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000634687 (
ENST00000535642
)
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,795 - 44,070,066 (18,272)
query : 1 - 1,904 (1,904/1,904)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000424810
(
AK292013
)
Representative transcript
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,795 - 44,070,062 (18,268)
query : 1 - 2,023 (2,023/2,023)
3 exons
identity = 0.998
3'(0.999;0.992;0.987)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169430
Pongo
sp. (Orangutan) : CR859783
Bos
sp. (Cow) : XM_001252945
Equus
sp. (Horse) : XM_001916315
Pan
sp. (Chimpanzee) : XM_507756
Canis
sp. (Dog) : XM_851677
HIX0008780
HIT000323902
(
X82125
)
(Zinc finger protein 239; Zinc finger protein HOK-2; Zinc finger protein MOK-2;)
genome : 44,051,795 - 44,063,907 (12,113)
query : 1 - 2,386 (2,386/2,386)
2 exons
identity = 0.996
3'(0.995;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000594722 (
ENST00000491188
)
(Zinc finger protein 239.)
genome : 44,052,977 - 44,070,045 (17,069)
query : 1 - 701 (701/701)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0008780
HIT000323904
(
X82128
)
(Conserved hypothetical protein.)
genome : 44,063,348 - 44,070,032 (6,685)
query : 5 - 212 (208/212)
3 exons
identity = 0.995
3'(1.000;1.000;0.978)5'
coverage = 0.981
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008780)
HIX0190589
HIT000515389 (
ENST00000417455
)
(Adenylate cyclase-associated CAP, C-terminal domain containing protein.)
genome : 44,100,291 - 44,101,699 (1,409)
query : 1 - 1,409 (1,409/1,409)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, mito 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0190589)
HIX0190589
pHIT000017470 ( pHIT000017470 )
Representative transcript
(Conserved hypothetical protein.)
genome : 44,100,291 - 44,101,622 (1,332)
query : 1 - 720 (720/720)
2 exons
InterPro :
IPR001837 : Adenylate cyclase-associated CAP
IPR006599 : CARP motif
IPR013912 : Adenylate cyclase-associated CAP, C-terminal
IPR013992 : Adenylate cyclase-associated CAP, N-terminal
IPR016098 : Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal
IPR017901 : C-CAP/cofactor C-like domain
IPR028415 : Adenylyl cyclase-associated protein CAP1
IPR028417 : CAP, conserved site, C-terminal
GO :
0000902 : Biological Process : cell morphogenesis
0003779 : Molecular Function : actin binding
0007010 : Biological Process : cytoskeleton organization
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0190589)
CAGE tag :
H05BC04P0701
Ortholog candidate ( ->
Evola
)
Oryzias
sp. (Medaka) : ENSORLT00000012182
Takifugu
sp. (Fugu) : SINFRUT00000181377
Bos
sp. (Cow) : XM_600414
Macaca
sp. (Macaque) : XR_012375
Pan
sp. (Chimpanzee) : XR_024132
Equus
sp. (Horse) : XR_036392
HIX0008781
HIT000213214 (
NM_145312
)
(Zinc finger protein 485.)
genome : 44,101,855 - 44,113,352 (11,498)
query : 1 - 2,055 (2,055/2,072)
5 exons
identity = 0.997
5'(1.000;0.976;0.969;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 17.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
HIX0008781
HIT000081714
(
AK074679
)
Representative transcript
(Zinc finger protein 485.)
genome : 44,101,855 - 44,113,351 (11,497)
query : 1 - 2,054 (2,054/2,054)
5 exons
identity = 0.997
5'(1.000;0.976;0.969;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 17.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB173420
Equus
sp. (Horse) : ENSECAT00000026100
Monodelphis
sp. (Opossum) : ENSMODT00000009375
Pongo
sp. (Orangutan) : ENSPPYT00000002667
Danio
sp. (Zebrafish) : NM_001039063
Pan
sp. (Chimpanzee) : XM_001151446
Monodelphis
sp. (Opossum) : XM_001377501
Monodelphis
sp. (Opossum) : XM_001379253
Rattus
sp. (Rat) : XR_007895
HIX0008781
HIT000315059 (
ENST00000361807
)
(Zinc finger protein 485.)
genome : 44,101,855 - 44,113,351 (11,497)
query : 1 - 2,054 (2,054/2,054)
5 exons
identity = 0.997
5'(1.000;0.976;0.969;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 17.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
HIX0008781
HIT000355717 (
ENST00000374437
)
(Zinc finger protein 485.)
genome : 44,101,855 - 44,113,035 (11,181)
query : 1 - 1,515 (1,515/1,515)
3 exons
identity = 0.998
5'(1.000;0.976;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
HIX0008781
HIT000494331
(
AK299707
)
(Zinc finger protein 485.)
genome : 44,101,855 - 44,113,035 (11,181)
query : 1 - 1,515 (1,515/1,515)
3 exons
identity = 0.997
5'(1.000;0.976;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
HIX0008781
HIT000528819 (
ENST00000430885
)
(Zinc finger protein 485.)
genome : 44,101,867 - 44,111,843 (9,977)
query : 1 - 529 (529/529)
5 exons
identity = 0.989
5'(1.000;0.976;0.969;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 16, nucl 7.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
HIX0008781
HIT000584678 (
ENST00000480678
)
(Hypothetical protein.)
genome : 44,101,867 - 44,102,848 (982)
query : 1 - 532 (532/532)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, nucl 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
HIX0008781
HIT000355715 (
ENST00000374435
)
(Zinc finger protein 485.)
genome : 44,101,874 - 44,113,351 (11,478)
query : 1 - 2,052 (2,052/2,052)
5 exons
identity = 0.997
5'(1.000;0.976;0.969;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 17.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
HIX0008781
HIT000036554
(
BC014161
)
(Zinc finger protein 485.)
genome : 44,101,875 - 44,113,352 (11,478)
query : 1 - 2,053 (2,053/2,070)
5 exons
identity = 0.995
5'(1.000;0.964;0.969;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
HIX0008781
HIT000056796
(
BX648149
)
(Zinc finger protein 485.)
genome : 44,101,912 - 44,113,350 (11,439)
query : 4 - 2,001 (1,998/2,010)
5 exons
identity = 0.996
5'(1.000;0.976;0.969;1.000;0.998)3'
coverage = 0.994
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 17.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
HIX0008781
HIT000432194
(
AK313328
)
(Zinc finger protein 485.)
genome : 44,102,475 - 44,112,817 (10,343)
query : 1 - 1,349 (1,349/1,349)
4 exons
identity = 0.994
5'(0.942;0.969;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 17.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008781)
HIX0035386
HIT000093093
(
BC033403
)
Representative transcript
(Hypothetical short protein.)
genome : 44,124,265 - 44,170,150 (45,886)
query : 1 - 1,931 (1,931/1,946)
5 exons
identity = 0.999
5'(0.994;1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, mito 12, cyto 3, cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035386)
HIX0035386
HIT000555997 (
ENST00000458063
)
(Conserved hypothetical protein.)
genome : 44,124,265 - 44,170,151 (45,887)
query : 1 - 1,932 (1,932/1,932)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, mito 12, cyto 3, cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035386)
HIX0035386
HIT000660436 (
NR_038867
)
(Hypothetical short protein.)
genome : 44,124,265 - 44,170,147 (45,883)
query : 1 - 1,928 (1,928/1,928)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, mito 12, cyto 3, cyto_pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035386)
HIX0035386
HIT000095479
(
BC039045
)
(Hypothetical short protein.)
genome : 44,124,297 - 44,125,924 (1,628)
query : 1 - 1,628 (1,628/1,643)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, cyto 12.5, nucl 10.5, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035386)
HIX0170870
HIT000529890 (
ENST00000431956
)
(Conserved hypothetical protein.)
genome : 44,126,330 - 44,127,012 (683)
query : 1 - 411 (411/411)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, cyto 2.5, cyto_nucl 2.5, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170870)
HIX0170948
HIT000534583 (
ENST00000436649
)
(Ribosomal protein L21e family protein.)
genome : 44,126,395 - 44,126,830 (436)
query : 1 - 436 (436/436)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170948)
HIX0026012
HIT000046431
(
AK126558
)
Representative transcript
(Conserved hypothetical protein.)
genome : 44,134,003 - 44,137,534 (3,532)
query : 1 - 3,524 (3,524/3,524)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, cyto 9.5, nucl 8.5, extr 8, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026012)
HIX0008782
HIT000203519 (
NM_006973
)
(Zinc finger protein 32; C2H2-546; Zinc finger protein KOX30;)
genome : 44,139,307 - 44,144,326 (5,020)
query : 1 - 1,159 (1,159/1,176)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
HIX0008782
HIT000316146 (
NM_001005368
)
(Zinc finger protein 32; C2H2-546; Zinc finger protein KOX30;)
genome : 44,139,307 - 44,144,152 (4,846)
query : 1 - 1,202 (1,202/1,219)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
HIX0008782
HIT000039646
(
BC022842
)
(Zinc finger protein 32; C2H2-546; Zinc finger protein KOX30;)
genome : 44,139,307 - 44,141,651 (2,345)
query : 12 - 1,094 (1,083/1,111)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.990
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
HIX0008782
HIT000221079
(
U69645
)
Representative transcript
(Zinc finger protein 32; C2H2-546; Zinc finger protein KOX30;)
genome : 44,139,310 - 44,144,304 (4,995)
query : 1 - 1,132 (1,132/1,140)
3 exons
identity = 0.996
3'(0.999;1.000;0.945)5'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC048843
Bos
sp. (Cow) : BC112772
Pongo
sp. (Orangutan) : ENSPPYT00000002668
Pan
sp. (Chimpanzee) : ENSPTRT00000004559
Rattus
sp. (Rat) : U78112
Macaca
sp. (Macaque) : XM_001100327
Equus
sp. (Horse) : XM_001489814
Canis
sp. (Dog) : XM_851677
HIX0008782
HIT000355713 (
ENST00000374433
)
(Zinc finger protein 32; C2H2-546; Zinc finger protein KOX30;)
genome : 44,139,307 - 44,144,304 (4,998)
query : 1 - 1,137 (1,137/1,137)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
HIX0008782
HIT000479162 (
ENST00000395797
)
(Zinc finger protein 32; C2H2-546; Zinc finger protein KOX30;)
genome : 44,139,308 - 44,144,152 (4,845)
query : 1 - 1,201 (1,201/1,201)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
HIX0171178
HIT000551218 (
ENST00000453284
)
(Non-protein coding transcript.)
genome : 44,139,320 - 44,140,495 (1,176)
query : 1 - 434 (434/434)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171178)
HIX0171178
HIT000726954 (
NR_047557
)
(Non-protein coding transcript.)
genome : 44,139,320 - 44,140,495 (1,176)
query : 1 - 434 (434/434)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171178)
HIX0008782
HIT000430998
(
AK312132
)
(Zinc finger protein 32; C2H2-546; Zinc finger protein KOX30;)
genome : 44,139,498 - 44,144,323 (4,826)
query : 1 - 965 (965/965)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
HIX0008782
HIT000321774
(
X52361
)
(Zinc finger protein 32.)
genome : 44,139,936 - 44,140,091 (156)
query : 1 - 156 (156/156)
1 exon
identity = 0.987
3'(0.987)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
HIX0008782
HIT000589159 (
ENST00000485351
)
(Zinc finger protein 32.)
genome : 44,140,097 - 44,141,723 (1,627)
query : 1 - 471 (471/471)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
HIX0008782
HIT000428349
(
AK309483
)
(Conserved hypothetical protein.)
genome : 44,140,415 - 44,144,333 (3,919)
query : 1 - 1,320 (1,320/1,320)
2 exons
identity = 0.999
3'(1.000;0.988)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, plas 7, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
HIX0219078
HIT000726955 (
NR_047558
)
(Conserved hypothetical protein.)
genome : 44,141,390 - 44,143,467 (2,078)
query : 1 - 905 (905/905)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 5, nucl 4, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219078)
HIX0008782
HIT000516900 (
ENST00000418966
)
(Zinc finger protein 32.)
genome : 44,141,390 - 44,143,467 (2,078)
query : 1 - 905 (905/905)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008782)
HIX0170695
HIT000516360 (
ENST00000418426
)
(Hypothetical short protein.)
genome : 44,161,116 - 44,162,453 (1,338)
query : 1 - 462 (462/462)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170695)
HIX0008783
HIT000022597
(
AK097743
)
Representative transcript
(Conserved hypothetical protein.)
genome : 44,165,473 - 44,167,246 (1,774)
query : 1 - 1,774 (1,774/1,774)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 8.5, cyto_nucl 7, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008783)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000002669
Pan
sp. (Chimpanzee) : ENSPTRT00000004563
HIX0171156
HIT000549437 (
ENST00000451503
)
(Ubiquinol-cytochrome C reductase hinge domain containing protein.)
genome : 44,227,782 - 44,228,032 (251)
query : 1 - 251 (251/251)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 5.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171156)
HIX0171097
HIT000545042 (
ENST00000447108
)
(SKP1 component, POZ domain containing protein.)
genome : 44,236,885 - 44,237,798 (914)
query : 1 - 299 (299/299)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 13.5, extr 8, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171097)
HIX0201535
HIT000517340 (
ENST00000419406
)
(Hypothetical short protein.)
genome : 44,273,010 - 44,274,273 (1,264)
query : 1 - 408 (408/408)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201535)
HIX0201535
HIT000521283 (
ENST00000423349
)
(Hypothetical short protein.)
genome : 44,273,010 - 44,274,074 (1,065)
query : 1 - 334 (334/334)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201535)
HIX0035801
HIT000216038
(
S63912
)
Representative transcript
(Heterogeneous nuclear ribonucleoprotein A3.)
genome : 44,282,860 - 44,285,865 (3,006)
query : 1 - 3,037 (3,037/3,043)
1 exon
identity = 0.979
3'(0.979)5'
coverage = 0.998
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035801)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK010481
Tetraodon
sp. (Tetraodon) : CR725623
Monodelphis
sp. (Opossum) : ENSMODT00000036237
Rattus
sp. (Rat) : XM_001073323
Macaca
sp. (Macaque) : XR_012459
Pan
sp. (Chimpanzee) : XR_021239
Bos
sp. (Cow) : XR_027309
HIX0035801
HIT000367074 (
NR_002726
)
(Heterogeneous nuclear ribonucleoprotein A3.)
genome : 44,282,860 - 44,285,865 (3,006)
query : 1 - 3,006 (3,006/3,006)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035801)
HIX0035801
HIT000521198 (
ENST00000423264
)
(Heterogeneous nuclear ribonucleoprotein A3.)
genome : 44,282,860 - 44,285,865 (3,006)
query : 1 - 3,006 (3,006/3,006)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035801)
HIX0035801
HIT000476004_02 (
ENST00000392524
)
(Heterogeneous nuclear ribonucleoprotein A3; hnRNP A3;)
genome : 44,284,003 - 44,285,890 (1,888)
query : 183 - 2,067 (1,885/2,067)
1 exon
identity = 0.966
3'(0.966)5'
coverage = 0.912
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035801)
HIX0035801
HIT000510472_04 (
ENST00000412538
)
(Heterogeneous nuclear ribonucleoprotein A3.)
genome : 44,284,674 - 44,284,894 (221)
query : 1 - 221 (221/221)
1 exon
identity = 0.959
3'(0.959)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 10.5, cyto_nucl 9.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035801)
HIX0035801
HIT000576552_04 (
ENST00000472163
)
(Heterogeneous nuclear ribonucleoprotein A3; hnRNP A3;)
genome : 44,284,693 - 44,285,754 (1,062)
query : 1 - 1,006 (1,006/1,006)
2 exons
identity = 0.960
3'(0.961;0.960)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035801)
HIX0035801
HIT000503729 (
ENST00000401429
)
(Heterogeneous nuclear ribonucleoprotein A3.)
genome : 44,284,697 - 44,285,835 (1,139)
query : 1 - 1,139 (1,139/1,139)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035801)
HIX0035801
HIT000476817_04 (
ENST00000393361
)
(Heterogeneous nuclear ribonucleoprotein A3.)
genome : 44,284,697 - 44,284,888 (192)
query : 1 - 192 (192/192)
1 exon
identity = 0.974
3'(0.974)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, extr 9, cyto 9, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035801)
HIX0035801
HIT000532289_04 (
ENST00000434355
)
(Heterogeneous nuclear ribonucleoprotein A3.)
genome : 44,284,697 - 44,284,888 (192)
query : 1 - 192 (192/192)
1 exon
identity = 0.974
3'(0.974)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, extr 9, cyto 9, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035801)
HIX0035801
HIT000522670_04 (
ENST00000424736
)
(Heterogeneous nuclear ribonucleoprotein A3; hnRNP A3;)
genome : 44,284,702 - 44,285,767 (1,066)
query : 3 - 1,029 (1,027/1,029)
2 exons
identity = 0.954
3'(0.960;0.951)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 24, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035801)
HIX0035546
HIT000089477
(
BC017939
)
Representative transcript
(Conserved hypothetical protein.)
genome : 44,340,754 - 44,346,070 (5,317)
query : 1 - 1,121 (1,121/1,150)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035546)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000002670
Pan
sp. (Chimpanzee) : XM_001152261
HIX0035546
HIT000659080 (
NR_033923
)
(Conserved hypothetical protein.)
genome : 44,340,754 - 44,346,070 (5,317)
query : 1 - 1,121 (1,121/1,131)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 14
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035546)
HIX0035546
HIT000355712 (
ENST00000374432
)
(Conserved hypothetical protein.)
genome : 44,340,754 - 44,346,070 (5,317)
query : 1 - 1,121 (1,121/1,121)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035546)
HIX0020796
HIT000011439
(
AK054825
)
Representative transcript
(Conserved hypothetical protein.)
genome : 44,354,859 - 44,390,881 (36,023)
query : 1 - 1,974 (1,974/1,974)
5 exons
identity = 0.999
5'(1.000;1.000;0.995;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020796)
HIX0020796
HIT000529671 (
ENST00000431737
)
(Hypothetical short protein.)
genome : 44,354,859 - 44,390,881 (36,023)
query : 1 - 1,974 (1,974/1,974)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020796)
HIX0020796
HIT000660208 (
NR_038268
)
(Hypothetical short protein.)
genome : 44,354,859 - 44,390,881 (36,023)
query : 1 - 1,974 (1,974/1,974)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020796)
HIX0170969
HIT000536388 (
ENST00000438454
)
(Hypothetical short protein.)
genome : 44,396,813 - 44,407,774 (10,962)
query : 1 - 493 (493/493)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 9, cyto 2.5, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170969)
HIX0019916
HIT000429168
(
AK310302
)
Representative transcript
(Hypothetical short protein.)
genome : 44,404,752 - 44,465,355 (60,604)
query : 1 - 981 (981/981)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.989)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto_nucl 4, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019916)
HIX0019916
HIT000659004 (
NR_033846
)
(Hypothetical short protein.)
genome : 44,404,752 - 44,465,355 (60,604)
query : 1 - 981 (981/981)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto_nucl 4, cyto 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019916)
HIX0171073
HIT000544041 (
ENST00000446107
)
(Hypothetical short protein.)
genome : 44,407,892 - 44,409,684 (1,793)
query : 1 - 513 (513/513)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto_nucl 6, nucl 4, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171073)
HIX0019916
HIT000018009
(
AK093142
)
(Conserved hypothetical protein.)
genome : 44,434,451 - 44,439,914 (5,464)
query : 1 - 2,125 (2,125/2,125)
5 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, plas 7.5, extr_plas 6.5, cyto_pero 6.5,
extr 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019916)
HIX0019916
HIT000549863 (
ENST00000451929
)
(Hypothetical protein.)
genome : 44,434,451 - 44,439,914 (5,464)
query : 1 - 2,126 (2,126/2,126)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, plas 7.5, extr_plas 6.5, cyto_pero 6.5,
extr 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019916)
HIX0170953
HIT000534948 (
ENST00000437014
)
(Hypothetical short protein.)
genome : 44,755,050 - 44,757,261 (2,212)
query : 1 - 841 (841/841)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170953)
HIX0190662
HIT000550512 (
ENST00000452578
)
(Conserved hypothetical protein.)
genome : 44,787,706 - 44,789,157 (1,452)
query : 1 - 915 (915/915)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 5.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0190662)
HIX0170554
HIT000490174
(
AK295550
)
Representative transcript
(Conserved hypothetical protein.)
genome : 44,788,198 - 44,790,097 (1,900)
query : 1 - 1,110 (1,110/1,110)
3 exons
identity = 0.998
5'(1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170554)
HIX0170554
HIT000724086 (
NM_001258000
)
(Conserved hypothetical protein.)
genome : 44,788,198 - 44,790,097 (1,900)
query : 1 - 1,110 (1,110/1,110)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 12
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170554)
HIX0008784
HIT000343040
(
DQ345519
)
(Stromal cell-derived factor 1 isoform alpha precursor.)
genome : 44,793,037 - 44,880,497 (87,461)
query : 1 - 619 (619/628)
4 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000343041
(
DQ345520
)
Representative transcript
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,793,037 - 44,880,497 (87,461)
query : 1 - 612 (612/621)
4 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
Ortholog candidate ( ->
Evola
)
Oryzias
sp. (Medaka) : AB214908
Rattus
sp. (Rat) : AF217564
Macaca
sp. (Macaque) : AF449283
Mus
sp. (Mouse) : AK157553
Danio
sp. (Zebrafish) : BC109417
Bos
sp. (Cow) : BC119979
Gallus
sp. (Chicken) : BX936268
Pongo
sp. (Orangutan) : CR859725
Equus
sp. (Horse) : ENSECAT00000020765
Takifugu
sp. (Fugu) : SINFRUT00000179073
Pan
sp. (Chimpanzee) : XM_001157556
Monodelphis
sp. (Opossum) : XM_001364934
HIX0008784
HIT000479160 (
ENST00000395795
)
(Stromal cell-derived factor 1 isoform alpha precursor.)
genome : 44,793,038 - 44,880,497 (87,460)
query : 1 - 618 (618/618)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000026699
(
AL713778
)
(Stromal cell-derived factor 1 isoform 5 precursor.)
genome : 44,865,613 - 44,870,009 (4,397)
query : 1 - 4,397 (4,397/4,505)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 8.5, cyto_nucl 6.83333, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000055851
(
BX647204
)
(Stromal cell-derived factor 1 isoform 5 precursor.)
genome : 44,865,608 - 44,870,946 (5,339)
query : 1 - 5,343 (5,343/5,362)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 8, cyto_nucl 6.83333, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000218349
(
U16752
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,865,613 - 44,880,529 (14,917)
query : 6 - 3,522 (3,517/3,541)
4 exons
identity = 0.987
3'(0.986;1.000;1.000;0.993)5'
coverage = 0.999
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000197639 (
NM_000609
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,865,601 - 44,880,545 (14,945)
query : 1 - 3,549 (3,549/3,549)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000725456 (
NM_001277990
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,865,601 - 44,880,545 (14,945)
query : 1 - 3,139 (3,139/3,139)
3 exons
identity = 0.998
3'(1.000;0.906;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000044514
(
AK124641
)
(Stromal cell-derived factor 1 isoform 5 precursor.)
genome : 44,865,607 - 44,870,220 (4,614)
query : 1 - 4,614 (4,614/4,614)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 8.5, cyto_nucl 6.83333, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000355709 (
ENST00000374429
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,865,613 - 44,880,540 (14,928)
query : 1 - 3,532 (3,532/3,532)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000193243
(
L36033
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,865,613 - 44,880,532 (14,920)
query : 1 - 3,524 (3,524/3,524)
4 exons
identity = 0.998
3'(0.998;1.000;1.000;0.993)5'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000479158 (
ENST00000395793
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,868,070 - 44,880,540 (12,471)
query : 1 - 665 (665/665)
3 exons
identity = 0.993
3'(1.000;0.906;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000366202 (
NM_001033886
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,871,315 - 44,880,545 (9,231)
query : 1 - 524 (524/524)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000355706 (
ENST00000374426
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,871,315 - 44,880,491 (9,177)
query : 1 - 470 (470/470)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000255930
(
AY644456
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,871,365 - 44,880,502 (9,138)
query : 1 - 431 (431/431)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000245054
(
AJ227905
)
(Non-protein coding transcript.)
genome : 44,872,333 - 44,872,548 (216)
query : 1 - 216 (216/217)
1 exon
identity = 0.963
3'(0.963)5'
coverage = 0.995
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000319635 (
NM_199168
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,872,510 - 44,880,545 (8,036)
query : 1 - 1,933 (1,933/1,940)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.996
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000655344 (
NM_001178134
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,872,510 - 44,880,545 (8,036)
query : 1 - 1,202 (1,202/1,209)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.994
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000052284
(
BC039893
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,872,581 - 44,880,523 (7,943)
query : 1 - 1,840 (1,840/1,874)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000051012
(
BC031072
)
(Stromal cell-derived factor 1 isoform delta precursor.)
genome : 44,872,581 - 44,880,545 (7,965)
query : 1 - 1,854 (1,854/1,868)
3 exons
identity = 0.994
3'(1.000;0.992;0.935)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 7, cyto_mito 5.66667, nucl 5.5,
cyto 5, mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000218513
(
U19495
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,872,581 - 44,880,739 (8,159)
query : 183 - 2,244 (2,062/2,244)
3 exons
identity = 0.957
3'(0.999;1.000;0.756)5'
coverage = 0.919
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000136205 (
ENST00000343575
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,872,581 - 44,880,540 (7,960)
query : 1 - 1,857 (1,857/1,857)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000193244
(
L36034
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,872,581 - 44,880,532 (7,952)
query : 1 - 1,847 (1,847/1,847)
3 exons
identity = 0.992
3'(0.992;1.000;0.993)5'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000343038
(
DQ345517
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,872,612 - 44,880,497 (7,886)
query : 1 - 1,052 (1,052/1,052)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000479159 (
ENST00000395794
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,872,612 - 44,880,497 (7,886)
query : 1 - 1,052 (1,052/1,052)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000258795
(
AY874118
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,873,671 - 44,880,532 (6,862)
query : 1 - 760 (760/760)
3 exons
identity = 0.995
3'(0.994;1.000;0.993)5'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000425425
(
AK292628
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,873,825 - 44,880,545 (6,721)
query : 4 - 621 (618/621)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000599699 (
ENST00000496375
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,874,005 - 44,881,941 (7,937)
query : 1 - 803 (803/803)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000430680
(
AK311814
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,874,084 - 44,880,543 (6,460)
query : 1 - 357 (357/372)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.960
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000267192
(
CR450283
)
(Stromal cell-derived factor 1; SDF-1; hSDF-1; C-X-C motif chemokine 12; Intercrine reduced in hepatomas; IRH; hIRH; Pre-B cell growth-stimulating factor; PBSF; Contains: SDF-1-beta(3-72); Contains: SDF-1-alpha(3-67); Precursor;)
genome : 44,874,084 - 44,880,453 (6,370)
query : 1 - 267 (267/267)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001811 : Chemokine interleukin-8-like domain
GO :
0005576 : Cellular Component : extracellular region
0006955 : Biological Process : immune response
0008009 : Molecular Function : chemokine activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000592232 (
ENST00000488591
)
(Conserved hypothetical protein.)
genome : 44,875,859 - 44,880,518 (4,660)
query : 1 - 596 (596/596)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 12.8333, extr 9, mito_nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0008784
HIT000015349
(
AK090482
)
(Conserved hypothetical protein.)
genome : 44,877,337 - 44,881,963 (4,627)
query : 1 - 4,632 (4,632/4,632)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11, cyto_nucl 11, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008784)
HIX0134139
HIT000475760 (
ENST00000392269
)
(Ribosomal protein L6, alpha-beta domain containing protein.)
genome : 44,910,097 - 44,910,601 (505)
query : 1 - 505 (505/505)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13.5, extr 5, nucl 3.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0134139)
HIX0219059
HIT000695292_04 (
ENST00000583411
)
(Hypothetical protein.)
genome : 44,983,782 - 44,983,893 (112)
query : 1 - 112 (112/112)
1 exon
identity = 0.991
3'(0.991)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219059)
HIX0171229
HIT000554656 (
ENST00000456722
)
(Hypothetical short protein.)
genome : 45,086,656 - 45,097,552 (10,897)
query : 1 - 732 (732/732)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 10, extr 6, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171229)
HIX0219109
HIT000309815 (
ENST00000355710
)
(Cadherin domain containing protein.)
genome : 43,572,475 - 43,625,799 (53,325)
query : 1 - 5,659 (5,659/5,659)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, extr_plas 12, extr 6, pero 4, E.R. 2.5,
E.R._golg 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219109)
HIX0219109
HIT000208135 (
NM_020975
)
(Cadherin domain containing protein.)
genome : 43,572,517 - 43,625,796 (53,280)
query : 1 - 5,614 (5,614/5,629)
20 exons
identity = 0.999
5'(1.000;0.996;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.10.1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, extr_plas 12, extr 6, pero 4, E.R. 2.5,
E.R._golg 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219109)
HIX0219109
HIT000195416
(
M31213
)
Representative transcript
(Protein of unknown function DUF2046 family protein.)
genome : 43,612,032 - 43,625,788 (13,757)
query : 355 - 3,639 (3,285/3,642)
9 exons
identity = 0.990
5'(0.986;0.981;1.000;0.992;1.000;1.000;1.000;
1.000;0.988)3'
coverage = 0.902
InterPro :
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR008266 : Tyrosine-protein kinase, active site
IPR019152 : Protein of unknown function DUF2046
IPR020635 : Tyrosine-protein kinase, catalytic domain
GO :
0004672 : Molecular Function : protein kinase activity
0004713 : Molecular Function : protein tyrosine kinase activity
0006468 : Biological Process : protein phosphorylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto 14, cyto_nucl 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219109)
HIX0008776
HIT000207328 (
NM_018590
)
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,633,893 - 43,680,753 (46,861)
query : 1 - 3,768 (3,768/3,782)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 13, pero 7, cyto_mito 7, mito_nucl 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008776)
HIX0008776
HIT000041007
(
BC030268
)
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,633,934 - 43,680,748 (46,815)
query : 1 - 3,722 (3,722/3,745)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
InterPro :
IPR008428 : Chondroitin N-acetylgalactosaminyltransferase
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0016758 : Molecular Function : transferase activity, transferring hexosyl groups
0032580 : Cellular Component : Golgi cisterna membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 13, pero 7, cyto_mito 7, mito_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008776)
HIX0008776
HIT000355746 (
ENST00000374466
)
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,633,934 - 43,680,756 (46,823)
query : 1 - 3,730 (3,730/3,730)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 13, pero 7, cyto_mito 7, mito_nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008776)
HIX0008776
HIT000061474
(
AB090811
)
Representative transcript
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,633,934 - 43,680,750 (46,817)
query : 1 - 3,724 (3,724/3,724)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
InterPro :
IPR008428 : Chondroitin N-acetylgalactosaminyltransferase
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0016758 : Molecular Function : transferase activity, transferring hexosyl groups
0032580 : Cellular Component : Golgi cisterna membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 13, pero 7, cyto_mito 7, mito_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008776)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK145992
Equus
sp. (Horse) : ENSECAT00000017017
Macaca
sp. (Macaque) : ENSMMUT00000021594
Monodelphis
sp. (Opossum) : ENSMODT00000001509
Oryzias
sp. (Medaka) : ENSORLT00000017461
Danio
sp. (Zebrafish) : NM_001126397
Takifugu
sp. (Fugu) : SINFRUT00000131162
Rattus
sp. (Rat) : XM_001056935
Pan
sp. (Chimpanzee) : XM_507752
Canis
sp. (Dog) : XM_543914
Bos
sp. (Cow) : XM_586267
HIX0008776
HIT000055511
(
BX640967
)
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,633,954 - 43,680,741 (46,788)
query : 1 - 3,813 (3,813/3,836)
9 exons
identity = 1.000
5'(1.000;0.999;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
InterPro :
IPR008428 : Chondroitin N-acetylgalactosaminyltransferase
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0016758 : Molecular Function : transferase activity, transferring hexosyl groups
0032580 : Cellular Component : Golgi cisterna membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, extr 14, cyto_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008776)
HIX0008776
HIT000061352
(
AB079252
)
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,633,970 - 43,680,748 (46,779)
query : 10 - 3,694 (3,685/3,727)
8 exons
identity = 0.999
5'(0.978;0.999;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.998
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
InterPro :
IPR008428 : Chondroitin N-acetylgalactosaminyltransferase
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0016758 : Molecular Function : transferase activity, transferring hexosyl groups
0032580 : Cellular Component : Golgi cisterna membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 13, pero 7, cyto_mito 7, mito_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008776)
HIX0008776
HIT000045173
(
AK125300
)
(Chondroitin sulfate N-acetylgalactosaminyltransferase 2; EC=2.4.1.174; Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2; Beta4GalNAcT-2; GalNAcT-2;)
genome : 43,633,981 - 43,679,223 (45,243)
query : 1 - 2,150 (2,150/2,150)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996)3'
coverage = 1.000
EC number :
EC 2.4.1.174
KEGG pathway :
00532 : Glycosaminoglycan biosynthesis - chondroitin sulfate (12)
01100 : Metabolic pathways (1346)
InterPro :
IPR008428 : Chondroitin N-acetylgalactosaminyltransferase
IPR029044 : Nucleotide-diphospho-sugar transferases
GO :
0016758 : Molecular Function : transferase activity, transferring hexosyl groups
0032580 : Cellular Component : Golgi cisterna membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 13, pero 7, cyto_mito 7, mito_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008776)
HIX0190589
pHIT000017470 ( pHIT000017470 )
Representative transcript
(Conserved hypothetical protein.)
genome : 44,100,291 - 44,101,622 (1,332)
query : 1 - 720 (720/720)
2 exons
InterPro :
IPR001837 : Adenylate cyclase-associated CAP
IPR006599 : CARP motif
IPR013912 : Adenylate cyclase-associated CAP, C-terminal
IPR013992 : Adenylate cyclase-associated CAP, N-terminal
IPR016098 : Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal
IPR017901 : C-CAP/cofactor C-like domain
IPR028415 : Adenylyl cyclase-associated protein CAP1
IPR028417 : CAP, conserved site, C-terminal
GO :
0000902 : Biological Process : cell morphogenesis
0003779 : Molecular Function : actin binding
0007010 : Biological Process : cytoskeleton organization
0030036 : Biological Process : actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0190589)
CAGE tag :
H04BA80M2002,H04BA88J1609,H05BA24N0506
H05BA70N1606,H05BC04P0701
Ortholog candidate ( ->
Evola
)
Oryzias
sp. (Medaka) : ENSORLT00000012182
Takifugu
sp. (Fugu) : SINFRUT00000181377
Bos
sp. (Cow) : XM_600414
Macaca
sp. (Macaque) : XR_012375
Pan
sp. (Chimpanzee) : XR_024132
Equus
sp. (Horse) : XR_036392
AC010864.11
43500001-43687191 F +
NCBI
AC068707.7
43687192-43854606 F +
NCBI
AL512654.9
43854607-43899882 F +
NCBI
AL450326.30
43899883-44095669 F +
NCBI
AL645634.6
44095670-44173775 F +
NCBI
AL355989.11
44173776-44333226 F +
NCBI
AL139237.30
44333227-44452028 F +
NCBI
AL512640.9
44452029-44546350 F +
NCBI
AL392045.9
44546351-44706283 F +
NCBI
AL137026.21
44706284-44888757 F +
NCBI
AL355141.17
44888758-44917388 F +
NCBI
AL356157.14
44917389-45100000 F +
NCBI