Clickable map CGI

HIX0008214
HIT000199379 ( NM_002486 )
  (Nuclear cap-binding protein subunit 1.)
  genome : 100,395,705 - 100,436,030 (40,326)
  query : 1 - 5,381 (5,381/5,381)
  23 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR003890 : MIF4G-like, type 3
    IPR015172 : MIF4G-like, type 1
    IPR015174 : MIF4G-like, type 2
    IPR016021 : MIF4-like, type 1/2/3
    IPR016024 : Armadillo-type fold
  GO :
    0005488 : Molecular Function : binding
    0005515 : Molecular Function : protein binding
    0016070 : Biological Process : RNA metabolic process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 24, cyto_nucl 16, cyto 6
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008214)

HIX0008214
HIT000356427 ( ENST00000375147 )
  (Nuclear cap-binding protein subunit 1.)
  genome : 100,395,705 - 100,436,030 (40,326)
  query : 1 - 5,381 (5,381/5,381)
  23 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 12, cyto_nucl 12, nucl 8, extr 6, mito 6
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008214)

HIX0008214
HIT000431673 ( AK312807 )
  (Nuclear cap-binding protein subunit 1; 80 kDa nuclear cap-binding protein; CBP80; NCBP 80 kDa subunit;)
  genome : 100,395,706 - 100,433,481 (37,776)
  query : 2 - 2,832 (2,831/2,832)
  23 exons
  identity = 0.999
  5'(1.000;0.992;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR003890 : MIF4G-like, type 3
    IPR015172 : MIF4G-like, type 1
    IPR015174 : MIF4G-like, type 2
    IPR016021 : MIF4-like, type 1/2/3
    IPR016024 : Armadillo-type fold
  GO :
    0005488 : Molecular Function : binding
    0005515 : Molecular Function : protein binding
    0016070 : Biological Process : RNA metabolic process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 24, cyto_nucl 16, cyto 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008214)

HIX0008214
HIT000101362 ( D32002 )
  Representative transcript
  (Nuclear cap-binding protein subunit 1.)
  genome : 100,395,908 - 100,433,911 (38,004)
  query : 9 - 3,066 (3,058/3,066)
  23 exons
  identity = 0.999
  5'(1.000;1.000;1.000;0.996)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 24, cyto_nucl 16, cyto 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008214)
  Ortholog candidate  ( -> Evola )
    Macaca sp. (Macaque) : AB179075
    Gallus sp. (Chicken) : AJ720288
    Mus sp. (Mouse) : AK133991
    Rattus sp. (Rat) : BC092199
    Bos sp. (Cow) : BC148967
    Monodelphis sp. (Opossum) : ENSMODT00000003983
    Oryzias sp. (Medaka) : ENSORLT00000013809
    Pongo sp. (Orangutan) : ENSPPYT00000022659
    Takifugu sp. (Fugu) : SINFRUT00000150573
    Equus sp. (Horse) : XM_001495401
    Pan sp. (Chimpanzee) : XM_520138
    Canis sp. (Dog) : XM_532003

HIX0008214
HIT000030423 ( BC001450 )
  (Nuclear cap-binding protein subunit 1.)
  genome : 100,396,101 - 100,433,539 (37,439)
  query : 1 - 2,494 (2,494/2,532)
  23 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR003890 : MIF4G-like, type 3
    IPR015172 : MIF4G-like, type 1
    IPR015174 : MIF4G-like, type 2
    IPR016021 : MIF4-like, type 1/2/3
    IPR016024 : Armadillo-type fold
  GO :
    0005488 : Molecular Function : binding
    0005515 : Molecular Function : protein binding
    0016070 : Biological Process : RNA metabolic process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 24, cyto_nucl 16, cyto 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008214)

HIX0008214
HIT000329168 ( AB209233 )
  (Nuclear cap-binding protein subunit 1; 80 kDa nuclear cap-binding protein; CBP80; NCBP 80 kDa subunit;)
  genome : 100,396,125 - 100,433,688 (37,564)
  query : 1 - 2,619 (2,619/2,619)
  23 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR003890 : MIF4G-like, type 3
    IPR015172 : MIF4G-like, type 1
    IPR015174 : MIF4G-like, type 2
    IPR016021 : MIF4-like, type 1/2/3
    IPR016024 : Armadillo-type fold
  GO :
    0005488 : Molecular Function : binding
    0005515 : Molecular Function : protein binding
    0016070 : Biological Process : RNA metabolic process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 24, cyto_nucl 16, cyto 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008214)

HIX0008214
HIT000323789 ( X80030 )
  (Nuclear cap-binding protein subunit 1.)
  genome : 100,396,135 - 100,433,905 (37,771)
  query : 2 - 2,828 (2,827/2,828)
  23 exons
  identity = 1.000
  5'(1.000;1.000;1.000;0.998)3'
  coverage = 1.000
  InterPro :
    IPR003890 : MIF4G-like, type 3
    IPR015172 : MIF4G-like, type 1
    IPR015174 : MIF4G-like, type 2
    IPR016021 : MIF4-like, type 1/2/3
    IPR016024 : Armadillo-type fold
  GO :
    0005488 : Molecular Function : binding
    0005515 : Molecular Function : protein binding
    0016070 : Biological Process : RNA metabolic process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 24, cyto_nucl 16, cyto 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008214)

HIX0008214
HIT000356410 ( ENST00000375130 )
  (Similar to Nuclear cap-binding protein subunit 1; 80 kDa nuclear cap-binding protein; CBP80; NCBP 80 kDa subunit;)
  genome : 100,429,043 - 100,432,358 (3,316)
  query : 1 - 730 (730/730)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR015174 : MIF4G-like, type 2
    IPR016021 : MIF4-like, type 1/2/3
    IPR016024 : Armadillo-type fold
  GO :
    0005488 : Molecular Function : binding
    0016070 : Biological Process : RNA metabolic process
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21, mito 8
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008214)

HIX0008214
HIT000594969 ( ENST00000491445 )
  (Hypothetical short protein.)
  genome : 100,434,993 - 100,436,022 (1,030)
  query : 1 - 300 (300/300)
  2 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008214)

HIX0008216
HIT000197424 ( NM_000380 )
  (DNA repair protein complementing XP-A cells.)
  genome : 100,437,191 - 100,459,691 (22,501)
  query : 1 - 1,469 (1,469/1,491)
  6 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR000465 : XPA
    IPR009061 : DNA binding domain, putative
    IPR022652 : Zinc finger, XPA-type, conserved site
    IPR022656 : XPA C- terminal
    IPR022658 : XPA, conserved site
  GO :
    0000166 : Molecular Function : nucleotide binding
    0003684 : Molecular Function : damaged DNA binding
    0005634 : Cellular Component : nucleus
    0006289 : Biological Process : nucleotide-excision repair
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008216)

HIX0008216
HIT000563402 ( NR_027302 )
  (DNA repair protein complementing XP-A cells; Xeroderma pigmentosum group A-complementing protein;)
  genome : 100,437,191 - 100,459,691 (22,501)
  query : 1 - 1,700 (1,700/1,722)
  7 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR000465 : XPA
    IPR009061 : DNA binding domain, putative
    IPR022652 : Zinc finger, XPA-type, conserved site
    IPR022656 : XPA C- terminal
    IPR022658 : XPA, conserved site
  GO :
    0000166 : Molecular Function : nucleotide binding
    0003684 : Molecular Function : damaged DNA binding
    0005634 : Cellular Component : nucleus
    0006289 : Biological Process : nucleotide-excision repair
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008216)

HIX0008216
HIT000567352 ( ENST00000462523 )
  (DNA repair protein complementing XP-A cells; Xeroderma pigmentosum group A-complementing protein;)
  genome : 100,437,191 - 100,459,575 (22,385)
  query : 1 - 1,584 (1,584/1,584)
  7 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR000465 : XPA
    IPR009061 : DNA binding domain, putative
    IPR022652 : Zinc finger, XPA-type, conserved site
    IPR022656 : XPA C- terminal
    IPR022658 : XPA, conserved site
  GO :
    0000166 : Molecular Function : nucleotide binding
    0003684 : Molecular Function : damaged DNA binding
    0005634 : Cellular Component : nucleus
    0006289 : Biological Process : nucleotide-excision repair
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008216)

HIX0008216
HIT000356408 ( ENST00000375128 )
  (DNA repair protein complementing XP-A cells.)
  genome : 100,437,192 - 100,459,691 (22,500)
  query : 1 - 1,468 (1,468/1,468)
  6 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 15, mito 8, cyto 6
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008216)

HIX0008216
HIT000100546 ( D14533 )
  (DNA repair protein complementing XP-A cells.)
  genome : 100,437,192 - 100,459,600 (22,409)
  query : 1 - 1,377 (1,377/1,377)
  6 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008216)

HIX0008216
HIT000280922 ( CR601727 )
  (DNA repair protein complementing XP-A cells.)
  genome : 100,437,222 - 100,459,577 (22,356)
  query : 1 - 1,324 (1,324/1,324)
  6 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR000465 : XPA
    IPR009061 : DNA binding domain, putative
    IPR022652 : Zinc finger, XPA-type, conserved site
    IPR022656 : XPA C- terminal
    IPR022658 : XPA, conserved site
  GO :
    0000166 : Molecular Function : nucleotide binding
    0003684 : Molecular Function : damaged DNA binding
    0005634 : Cellular Component : nucleus
    0006289 : Biological Process : nucleotide-excision repair
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008216)

HIX0008216
HIT000303312 ( CR624117 )
  (DNA repair protein complementing XP-A cells; Xeroderma pigmentosum group A-complementing protein;)
  genome : 100,437,251 - 100,459,593 (22,343)
  query : 1 - 1,542 (1,542/1,542)
  7 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR000465 : XPA
    IPR009061 : DNA binding domain, putative
    IPR022652 : Zinc finger, XPA-type, conserved site
    IPR022656 : XPA C- terminal
    IPR022658 : XPA, conserved site
  GO :
    0000166 : Molecular Function : nucleotide binding
    0003684 : Molecular Function : damaged DNA binding
    0005634 : Cellular Component : nucleus
    0006289 : Biological Process : nucleotide-excision repair
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008216)

HIX0008216
HIT000588866 ( ENST00000485042 )
  (Similar to DNA repair protein complementing XP-A cells; Xeroderma pigmentosum group A-complementing protein;)
  genome : 100,437,349 - 100,438,237 (889)
  query : 1 - 706 (706/706)
  2 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR000465 : XPA
  GO :
    0003684 : Molecular Function : damaged DNA binding
    0005634 : Cellular Component : nucleus
    0006289 : Biological Process : nucleotide-excision repair
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 26, cyto 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008216)

HIX0008216
HIT000266530 ( BT019518 )
  (DNA repair protein complementing XP-A cells.)
  genome : 100,437,723 - 100,459,574 (21,852)
  query : 1 - 820 (820/822)
  6 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 0.998
  InterPro :
    IPR000465 : XPA
    IPR009061 : DNA binding domain, putative
    IPR022652 : Zinc finger, XPA-type, conserved site
    IPR022656 : XPA C- terminal
    IPR022658 : XPA, conserved site
  GO :
    0000166 : Molecular Function : nucleotide binding
    0003684 : Molecular Function : damaged DNA binding
    0005634 : Cellular Component : nucleus
    0006289 : Biological Process : nucleotide-excision repair
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 16.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008216)

HIX0021983
HIT000015934 ( AK091067 )
  Representative transcript
  (Hypothetical protein.)
  genome : 100,440,045 - 100,441,883 (1,839)
  query : 1 - 1,840 (1,840/1,840)
  1 exon
  identity = 0.993
  3'(0.993)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    cyto 27, E.R._mito 2.5, mito 2, pero 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0021983)

HIX0008216
HIT000599443 ( ENST00000496104 )
  (Similar to DNA repair protein complementing XP-A cells; Xeroderma pigmentosum group A-complementing protein;)
  genome : 100,447,243 - 100,459,577 (12,335)
  query : 1 - 429 (429/429)
  4 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR000465 : XPA
    IPR009061 : DNA binding domain, putative
    IPR022656 : XPA C- terminal
    IPR022658 : XPA, conserved site
  GO :
    0000166 : Molecular Function : nucleotide binding
    0003684 : Molecular Function : damaged DNA binding
    0005634 : Cellular Component : nucleus
    0006289 : Biological Process : nucleotide-excision repair
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 30.5, cyto_nucl 17.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0008216)

HIX0139480
HIT000483056 ( ENST00000400056 )
  Representative transcript
  (Conserved hypothetical protein.)
  genome : 100,461,249 - 100,463,016 (1,768)
  query : 1 - 1,196 (1,196/1,196)
  2 exons
  identity = 0.996
  5'(1.000;0.992)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 15, cyto_nucl 14.5, cyto 10, extr 6
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0139480)

AL162385.16
100428441-100432853 F +
NCBI

AL445531.10
100432854-100468440 F +
NCBI

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )