bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0017483
HIT000492100
(
AK297476
)
genome : 564,744 - 681,209 (116,466)
query : 1 - 2,443 (2,443/2,443)
7 exons
identity = 0.993
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000642864 (
ENST00000543819
)
genome : 564,744 - 681,209 (116,466)
query : 1 - 2,443 (2,443/2,443)
7 exons
identity = 0.998
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000621995 (
ENST00000522706
)
genome : 564,746 - 681,197 (116,452)
query : 1 - 1,551 (1,551/1,551)
4 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000045343
(
AK125470
)
genome : 564,749 - 623,326 (58,578)
query : 5 - 3,634 (3,630/3,634)
4 exons
identity = 0.997
3'()5'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000622696 (
ENST00000523415
)
genome : 564,749 - 623,326 (58,578)
query : 1 - 3,630 (3,630/3,630)
4 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000292993
(
CR613798
)
genome : 564,787 - 681,197 (116,411)
query : 1 - 1,510 (1,510/1,510)
4 exons
identity = 1.000
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0201310
HIT000047725
(
AK127852
)
Representative transcript
(Hypothetical protein.)
genome : 592,363 - 601,884 (9,522)
query : 1 - 4,508 (4,508/4,508)
2 exons
identity = 0.995
3'(0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10.5, cyto_mito 9.83333, extr 9,
cyto_nucl 7.66667, cyto 7.5, cyto_pero 4.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201310)
HIX0201311
HIT000048191
(
AK128318
)
Representative transcript
(Retrovirus capsid, N-terminal core domain containing protein.)
genome : 607,192 - 611,619 (4,428)
query : 1 - 3,259 (3,259/3,259)
2 exons
identity = 0.994
3'(0.989;0.996)5'
coverage = 1.000
InterPro :
IPR008919 : Retrovirus capsid, N-terminal core
GO :
0016032 : Biological Process : viral reproduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 8, extr 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201311)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : ENSPTRT00000059974
HIX0201311
HIT000602196 (
ENST00000499740
)
(Retrovirus capsid, N-terminal core domain containing protein.)
genome : 607,192 - 611,619 (4,428)
query : 1 - 3,258 (3,258/3,258)
2 exons
identity = 0.995
3'(0.993;0.996)5'
coverage = 1.000
InterPro :
IPR008919 : Retrovirus capsid, N-terminal core
GO :
0016032 : Biological Process : viral reproduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 8, extr 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201311)
HIX0168935
HIT000468159_10
(
DQ601628
)
Representative transcript
(Non-protein coding transcript.)
genome : 607,458 - 607,487 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0168935)
HIX0017483
HIT000053024
(
BC046243
)
Representative transcript
(Glutamate-rich protein 1.)
genome : 614,200 - 681,226 (67,027)
query : 1 - 1,800 (1,800/1,836)
6 exons
identity = 0.999
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, mito_nucl 15.1667, cyto_nucl 14.3333,
mito 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB097526
Canis
sp. (Dog) : AJ388547
Mus
sp. (Mouse) : AK147828
Gallus
sp. (Chicken) : BX930034
Pongo
sp. (Orangutan) : ENSPPYT00000021322
Rattus
sp. (Rat) : XM_001075018
Monodelphis
sp. (Opossum) : XM_001381412
Equus
sp. (Horse) : XM_001496407
Pan
sp. (Chimpanzee) : XR_025527
HIX0017483
HIT000320343 (
NM_207332
)
(Glutamate-rich protein 1.)
genome : 614,200 - 681,226 (67,027)
query : 1 - 1,800 (1,800/1,836)
6 exons
identity = 0.999
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, mito_nucl 15.1667, cyto_nucl 14.3333,
mito 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000055740
(
BX647093
)
(Similar to Glutamate-rich protein 1;)
genome : 614,200 - 620,380 (6,181)
query : 1 - 6,141 (6,141/6,158)
2 exons
identity = 0.996
3'(0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 18, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000108268 (
ENST00000262109
)
(Glutamate-rich protein 1.)
genome : 614,201 - 681,226 (67,026)
query : 1 - 1,799 (1,799/1,799)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, extr 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000271407
(
CR592212
)
(Glutamate-rich protein 1.)
genome : 614,225 - 681,205 (66,981)
query : 1 - 1,754 (1,754/1,754)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, mito_nucl 15.1667, cyto_nucl 14.3333,
mito 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000298184
(
CR618989
)
(Glutamate-rich protein 1.)
genome : 614,248 - 681,202 (66,955)
query : 1 - 1,728 (1,728/1,728)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, mito_nucl 15.1667, cyto_nucl 14.3333,
mito 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000423061
(
AK290264
)
(Glutamate-rich protein 1.)
genome : 614,341 - 681,223 (66,883)
query : 1 - 1,656 (1,656/1,656)
6 exons
identity = 0.999
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, mito_nucl 15.1667, cyto_nucl 14.3333,
mito 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000622337 (
ENST00000523053
)
(Similar to Glutamate-rich protein 1;)
genome : 614,622 - 619,277 (4,656)
query : 1 - 735 (735/735)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 16.5, cyto 10.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000028236
(
AL833324
)
(Similar to Glutamate-rich protein 1;)
genome : 615,993 - 623,657 (7,665)
query : 1 - 3,169 (3,169/3,187)
2 exons
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 11.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
HIX0017483
HIT000622178 (
ENST00000522893
)
(Similar to Glutamate-rich protein 1;)
genome : 615,992 - 623,657 (7,666)
query : 1 - 3,170 (3,170/3,170)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 11.5, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017483)
AC090691.16
601405-617404 F +
NCBI
L1MC4
G-rich
L1MC4
MER94
MIRc
L1MB3
MER57A1
L1MB3
L1MB3
L1ME3A
AT_rich
(TTCC)n
L1MC4
Charlie1
Charlie1
LTR19A
HERVFH19-int
MLT1B
MLT1E1A
LTR57
AluSp
AluY
(CAAAAA)n
AT_rich
L2b