bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0034586
HIT000098236
(
BC045817
)
Representative transcript
(Hypothetical protein.)
genome : 136,246,374 - 136,311,961 (65,588)
query : 1 - 1,239 (1,239/1,276)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034586)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : XM_001141970
HIX0034586
HIT000562903 (
NR_026706
)
(Hypothetical protein.)
genome : 136,246,374 - 136,311,961 (65,588)
query : 1 - 1,239 (1,239/1,276)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034586)
HIX0034586
HIT000621578 (
ENST00000522279
)
(Hypothetical protein.)
genome : 136,246,374 - 136,311,962 (65,589)
query : 1 - 1,240 (1,240/1,240)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034586)
HIX0034586
HIT000619444 (
ENST00000520101
)
(Hypothetical protein.)
genome : 136,246,479 - 136,308,798 (62,320)
query : 1 - 628 (628/628)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034586)
HIX0034586
HIT000387642
(
BC117352
)
(Conserved hypothetical protein.)
genome : 136,246,480 - 136,308,798 (62,319)
query : 1 - 644 (644/644)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034586)
HIX0034586
HIT000503467
(
BC171736
)
(Hypothetical protein.)
genome : 136,246,480 - 136,308,798 (62,319)
query : 1 - 627 (627/627)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034586)
HIX0034586
HIT000502445
(
BC144006
)
(Conserved hypothetical protein.)
genome : 136,246,480 - 136,308,792 (62,313)
query : 1 - 602 (602/602)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034586)
HIX0034586
HIT000623337 (
ENST00000524070
)
(Hypothetical protein.)
genome : 136,246,480 - 136,308,792 (62,313)
query : 1 - 602 (602/602)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034586)
HIX0034586
HIT000387640
(
BC117350
)
(Conserved hypothetical protein.)
genome : 136,246,482 - 136,308,798 (62,317)
query : 2 - 643 (642/643)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034586)
AC022681.8
136239168-136261303 F +
NCBI
AC107460.5
136261304-136319167 F +
NCBI