bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0007722
HIT000622947 (
ENST00000523674
)
(Conserved hypothetical protein.)
genome : 109,213,445 - 109,215,575 (2,131)
query : 1 - 1,072 (1,072/1,072)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 11.5, cyto 7.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000039244
(
BC021679
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,213,972 - 109,260,946 (46,975)
query : 5 - 1,499 (1,495/1,536)
13 exons
identity = 0.999
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.992
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000038180
(
BC017887
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,213,972 - 109,260,942 (46,971)
query : 14 - 1,504 (1,491/1,534)
13 exons
identity = 0.999
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000037643
(
BC016706
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,213,980 - 109,260,946 (46,967)
query : 5 - 1,491 (1,487/1,523)
13 exons
identity = 0.999
3'(1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000198538 (
NM_001568
)
(Eukaryotic translation initiation factor 3 subunit E family protein.)
genome : 109,213,972 - 109,260,959 (46,988)
query : 1 - 1,508 (1,508/1,516)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000220747
(
U62962
)
Representative transcript
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,213,972 - 109,260,952 (46,981)
query : 2 - 1,502 (1,501/1,510)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.994
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000221958
(
U85947
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,213,972 - 109,260,937 (46,966)
query : 3 - 1,488 (1,486/1,493)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000103484 (
ENST00000220849
)
(Eukaryotic translation initiation factor 3 subunit E family protein.)
genome : 109,213,972 - 109,260,994 (47,023)
query : 1 - 1,543 (1,543/1,543)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000222683
(
U94175
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,213,972 - 109,260,951 (46,980)
query : 1 - 1,500 (1,500/1,500)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000621650 (
ENST00000522352
)
(Proteasome component (PCI) domain containing protein.)
genome : 109,213,972 - 109,241,365 (27,394)
query : 1 - 611 (611/611)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000220319
(
U54562
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,213,973 - 109,260,937 (46,965)
query : 1 - 1,485 (1,485/1,485)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000618395 (
ENST00000519030
)
(Eukaryotic translation initiation factor 3 subunit E family protein.)
genome : 109,214,009 - 109,260,927 (46,919)
query : 1 - 1,324 (1,324/1,324)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13.3333, cyto_plas 9.33333,
nucl 8.5, cysk 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000032543
(
BC005944
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,214,093 - 109,260,945 (46,853)
query : 4 - 1,376 (1,373/1,405)
13 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.990)5'
coverage = 0.998
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, nucl 7, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000029879
(
BC000734
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,214,101 - 109,260,935 (46,835)
query : 1 - 1,355 (1,355/1,372)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000033779
(
BC008419
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,214,114 - 109,260,953 (46,840)
query : 1 - 1,360 (1,360/1,389)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000044051
(
AK124178
)
(Eukaryotic translation initiation factor 3 subunit E.)
genome : 109,214,094 - 109,255,062 (40,969)
query : 1 - 1,990 (1,990/1,990)
13 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.993)5'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, nucl 7, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000620929 (
ENST00000521614
)
(Eukaryotic translation initiation factor 3 subunit E family protein.)
genome : 109,214,094 - 109,255,062 (40,969)
query : 1 - 1,990 (1,990/1,990)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, nucl 7, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000432052
(
AK313186
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,214,114 - 109,260,948 (46,835)
query : 1 - 1,355 (1,355/1,355)
13 exons
identity = 0.998
3'(1.000;0.993;1.000;1.000;0.990;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.991)5'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000267879
(
CR457029
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,214,118 - 109,260,931 (46,814)
query : 1 - 1,334 (1,334/1,338)
13 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.992;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.997
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000269143
(
CR542275
)
(Eukaryotic translation initiation factor 3 subunit E; eIF3e; Eukaryotic translation initiation factor 3 subunit 6; Viral integration site protein INT-6 homolog; eIF-3 p48;)
genome : 109,214,117 - 109,260,931 (46,815)
query : 1 - 1,335 (1,335/1,335)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000618867 (
ENST00000519517
)
(Proteasome component (PCI) domain containing protein.)
genome : 109,215,699 - 109,244,137 (28,439)
query : 1 - 726 (726/726)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, nucl 6.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000618977 (
ENST00000519627
)
(Eukaryotic translation initiation factor 3 subunit E family protein.)
genome : 109,226,836 - 109,260,948 (34,113)
query : 1 - 697 (697/697)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14.5, nucl 6.5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000618769 (
ENST00000519413
)
(Conserved hypothetical protein.)
genome : 109,228,705 - 109,240,161 (11,457)
query : 1 - 419 (419/419)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, extr 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000621741 (
ENST00000522445
)
(Eukaryotic translation initiation factor 3 subunit E, N-terminal domain containing protein.)
genome : 109,229,610 - 109,260,947 (31,338)
query : 1 - 841 (841/841)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, cyto 13, nucl 12, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0208687
HIT000619383 (
ENST00000520037
)
(Hypothetical short protein.)
genome : 109,238,439 - 109,239,773 (1,335)
query : 11 - 447 (437/447)
2 exons
identity = 0.991
5'(1.000;0.988)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208687)
HIX0007722
HIT000622919 (
ENST00000523646
)
(Conserved hypothetical protein.)
genome : 109,240,406 - 109,241,627 (1,222)
query : 1 - 544 (544/544)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14.5, nucl 6.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000620757 (
ENST00000521440
)
(Eukaryotic translation initiation factor 3 subunit E family protein.)
genome : 109,245,623 - 109,260,927 (15,305)
query : 1 - 746 (746/746)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, nucl 11, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000429768
(
AK310902
)
(Eukaryotic translation initiation factor 3 subunit E.)
genome : 109,246,513 - 109,261,031 (14,519)
query : 1 - 1,285 (1,285/1,285)
5 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR016650 : Eukaryotic translation initiation factor 3 subunit E
IPR019010 : Eukaryotic translation initiation factor 3 subunit E, N-terminal
GO :
0003743 : Molecular Function : translation initiation factor activity
0005737 : Cellular Component : cytoplasm
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, pero 5, nucl 4, cyto 4, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000617821 (
ENST00000518442
)
(Eukaryotic translation initiation factor 3 subunit E family protein.)
genome : 109,246,513 - 109,261,031 (14,519)
query : 1 - 1,285 (1,285/1,285)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, pero 5, nucl 4, cyto 4, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000617486 (
ENST00000518100
)
(Eukaryotic translation initiation factor 3 subunit E, N-terminal domain containing protein.)
genome : 109,247,260 - 109,260,945 (13,686)
query : 1 - 687 (687/687)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13.5, nucl 8.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000622172 (
ENST00000522887
)
(Eukaryotic translation initiation factor 3 subunit E, N-terminal domain containing protein.)
genome : 109,247,283 - 109,260,946 (13,664)
query : 1 - 575 (575/575)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13, nucl 7.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000620614_02 (
ENST00000521297
)
(Eukaryotic translation initiation factor 3 subunit E, N-terminal domain containing protein.)
genome : 109,248,385 - 109,260,897 (12,513)
query : 1 - 219 (219/223)
3 exons
identity = 0.991
3'(0.958;1.000;1.000)5'
coverage = 0.982
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 12.5, nucl 8, mito 6, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0007722
HIT000617727 (
ENST00000518345
)
(Eukaryotic translation initiation factor 3 subunit E family protein.)
genome : 109,248,385 - 109,260,946 (12,562)
query : 1 - 557 (557/558)
5 exons
identity = 0.996
3'(0.958;1.000;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13, nucl 7.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007722)
HIX0208218
HIT000621395 (
ENST00000522088
)
(Conserved hypothetical protein.)
genome : 109,321,251 - 109,447,562 (126,312)
query : 1 - 715 (715/715)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28.5, extr_plas 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208218)
HIX0208218
HIT000618009 (
ENST00000518634
)
(Hypothetical short protein.)
genome : 109,321,562 - 109,367,955 (46,394)
query : 1 - 527 (527/545)
2 exons
identity = 0.998
3'(0.992;1.000)5'
coverage = 0.967
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208218)
HIX0218216
HIT000364018 (
ENST00000382740
)
(Ribosomal protein S17e family protein.)
genome : 109,391,060 - 109,391,774 (715)
query : 1 - 395 (395/395)
2 exons
identity = 0.995
3'(1.000;0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 11, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218216)
HIX0007723
HIT000623407 (
ENST00000524143
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,830 - 109,468,131 (12,302)
query : 1 - 533 (533/533)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, extr 11, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000039235
(
BC021667
)
Representative transcript
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,853 - 109,499,136 (43,284)
query : 5 - 1,242 (1,238/1,273)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.995
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 14.3333, cyto_pero 11.3333,
nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK014989
Bos
sp. (Cow) : BC142076
Gallus
sp. (Chicken) : BX931995
Pongo
sp. (Orangutan) : CR859872
Danio
sp. (Zebrafish) : ENSDART00000023238
Rattus
sp. (Rat) : ENSRNOT00000006890
Takifugu
sp. (Fugu) : SINFRUT00000146667
Macaca
sp. (Macaque) : XM_001090826
Pan
sp. (Chimpanzee) : XM_001135830
Monodelphis
sp. (Opossum) : XM_001380466
Equus
sp. (Horse) : XM_001494974
Canis
sp. (Dog) : XM_845168
HIX0007723
HIT000204989 (
NM_014673
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,853 - 109,499,136 (43,284)
query : 1 - 1,238 (1,238/1,268)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 14.3333, cyto_pero 11.3333,
nucl 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000103485 (
ENST00000220853
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,853 - 109,499,141 (43,289)
query : 1 - 1,243 (1,243/1,243)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 14.3333, cyto_pero 11.3333,
nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000616988 (
ENST00000517593
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,862 - 109,468,302 (12,441)
query : 1 - 532 (532/532)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 12.8333, cyto_pero 11, extr 6,
nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000330395
(
AK222615
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,864 - 109,499,147 (43,284)
query : 1 - 1,238 (1,238/1,254)
11 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.988;1.000;
1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR013105 : Tetratricopeptide TPR2
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 14.3333, cyto_pero 11.3333,
nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000086724
(
BC007027
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,866 - 109,499,146 (43,281)
query : 1 - 1,236 (1,236/1,267)
11 exons
identity = 0.999
5'(1.000;0.991;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 14.3333, cyto_pero 11.3333,
nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000038937
(
BC020753
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,866 - 109,499,144 (43,279)
query : 1 - 1,233 (1,233/1,262)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.988;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13.8333, cyto_pero 10.8333,
nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000617176 (
ENST00000517784
)
(Conserved hypothetical protein.)
genome : 109,455,866 - 109,483,191 (27,326)
query : 1 - 640 (640/640)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000423771
(
AK290974
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,878 - 109,498,996 (43,119)
query : 1 - 1,073 (1,073/1,073)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.988;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 14.3333, cyto_pero 11.3333,
nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000042156
(
D14659
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,882 - 109,499,146 (43,265)
query : 1 - 1,219 (1,219/1,219)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 14.3333, cyto_pero 11.3333,
nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000268252
(
CR457402
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,455,888 - 109,498,827 (42,940)
query : 1 - 894 (894/894)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 14.3333, cyto_pero 11.3333,
nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000618992 (
ENST00000519642
)
(Conserved hypothetical protein.)
genome : 109,462,660 - 109,498,792 (36,133)
query : 1 - 404 (404/404)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000619634 (
ENST00000520294
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,476,276 - 109,498,865 (22,590)
query : 1 - 655 (655/655)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, mito_nucl 13.5, extr 4, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000014185
(
AK057571
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,486,080 - 109,499,145 (13,066)
query : 1 - 2,734 (2,734/2,734)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 8, nucl 4, mito 4, extr_plas 4,
mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0007723
HIT000618804 (
ENST00000519450
)
(ER membrane protein complex subunit 2; Tetratricopeptide repeat protein 35; TPR repeat protein 35;)
genome : 109,486,080 - 109,499,145 (13,066)
query : 1 - 2,734 (2,734/2,734)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 8, nucl 4, mito 4, extr_plas 4,
mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007723)
HIX0208740
HIT000620093 (
ENST00000520765
)
(DnaJ domain containing protein.)
genome : 109,584,872 - 109,585,403 (532)
query : 1 - 532 (532/532)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208740)
HIX0208798
HIT000620821 (
ENST00000521504
)
(Hypothetical short protein.)
genome : 109,593,291 - 109,638,996 (45,706)
query : 1 - 382 (382/382)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, extr 10, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208798)
HIX0007724
HIT000041778
(
BC033057
)
(Conserved hypothetical protein.)
genome : 109,619,079 - 109,799,823 (180,745)
query : 1 - 1,255 (1,255/1,268)
4 exons
identity = 0.996
3'(0.996;1.000;1.000;0.992)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, extr 8, nucl 6, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007724)
HIX0007724
HIT000618208 (
ENST00000518838
)
(Conserved hypothetical protein.)
genome : 109,619,079 - 109,799,823 (180,745)
query : 1 - 1,255 (1,255/1,255)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 7.5, nucl 5.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007724)
HIX0208644
HIT000618733 (
ENST00000519377
)
(Conserved hypothetical protein.)
genome : 109,664,602 - 109,665,544 (943)
query : 1 - 943 (943/943)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14.5, nucl 10.5, extr 2, mito 2,
cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208644)
HIX0007724
HIT000011844
(
AK055230
)
Representative transcript
(Transmembrane protein 74;)
genome : 109,795,346 - 109,799,770 (4,425)
query : 1 - 2,087 (2,087/2,087)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007724)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK045145
Gallus
sp. (Chicken) : CR406186
Canis
sp. (Dog) : ENSCAFT00000001114
Pongo
sp. (Orangutan) : ENSPPYT00000021960
Tetraodon
sp. (Tetraodon) : GSTENT00013239001
Takifugu
sp. (Fugu) : SINFRUT00000181202
Rattus
sp. (Rat) : XM_001063530
Macaca
sp. (Macaque) : XM_001091064
Pan
sp. (Chimpanzee) : XM_001135992
Monodelphis
sp. (Opossum) : XM_001380492
Equus
sp. (Horse) : XM_001495248
Danio
sp. (Zebrafish) : XM_001921419
Bos
sp. (Cow) : XM_590746
HIX0007724
HIT000214156 (
NM_153015
)
(Transmembrane protein 74;)
genome : 109,795,346 - 109,799,770 (4,425)
query : 1 - 2,087 (2,087/2,087)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007724)
HIX0007724
HIT000041116
(
BC030710
)
(Transmembrane protein 74;)
genome : 109,795,768 - 109,799,844 (4,077)
query : 1 - 1,739 (1,739/1,754)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007724)
HIX0007724
HIT000114812 (
ENST00000297459
)
(Transmembrane protein 74;)
genome : 109,795,766 - 109,799,844 (4,079)
query : 1 - 1,741 (1,741/1,741)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007724)
HIX0168916
HIT000450273_08
(
DQ583742
)
Representative transcript
(Non-protein coding transcript.)
genome : 109,824,601 - 109,824,630 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0168916)
HIX0208264
HIT000621544 (
ENST00000522244
)
(Non-protein coding transcript.)
genome : 109,907,258 - 110,075,646 (168,389)
query : 1 - 481 (481/481)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208264)
HIX0208264
HIT000623398 (
ENST00000524134
)
(Hypothetical short protein.)
genome : 109,920,446 - 109,930,842 (10,397)
query : 1 - 486 (486/486)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 3, nucl 2, cyto_mito 2, cyto_golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208264)
HIX0034322
HIT000384068
(
AJ011701
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,097,134 - 110,100,560 (3,427)
query : 1 - 3,394 (3,394/3,394)
1 exon
identity = 0.989
5'(0.989)3'
coverage = 1.000
InterPro :
IPR002120 : Thyrotropin-releasing hormone receptor
GO :
0004997 : Molecular Function : thyrotropin-releasing hormone receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000391592
(
D85376
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,098,396 - 110,133,794 (35,399)
query : 1 - 4,799 (4,799/4,799)
2 exons
identity = 0.978
5'(0.980;0.975)3'
coverage = 1.000
InterPro :
IPR002120 : Thyrotropin-releasing hormone receptor
GO :
0004997 : Molecular Function : thyrotropin-releasing hormone receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000618007 (
ENST00000518632
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,098,850 - 110,131,796 (32,947)
query : 1 - 1,660 (1,660/1,660)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000119168 (
ENST00000311762
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,099,653 - 110,131,813 (32,161)
query : 1 - 1,415 (1,415/1,415)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000200143 (
NM_003301
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,099,653 - 110,131,813 (32,161)
query : 1 - 1,415 (1,415/1,415)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000338133
(
BC105045
)
Representative transcript
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,099,653 - 110,131,761 (32,109)
query : 1 - 1,363 (1,363/1,363)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002120 : Thyrotropin-releasing hormone receptor
GO :
0004997 : Molecular Function : thyrotropin-releasing hormone receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
Ortholog candidate ( ->
Evola
)
Oryzias
sp. (Medaka) : ENSORLT00000009991
Pongo
sp. (Orangutan) : ENSPPYT00000021961
Tetraodon
sp. (Tetraodon) : GSTENT00008191001
Tetraodon
sp. (Tetraodon) : GSTENT00013238001
Mus
sp. (Mouse) : M94384
Bos
sp. (Cow) : NM_174203
Takifugu
sp. (Fugu) : SINFRUT00000146669
Takifugu
sp. (Fugu) : SINFRUT00000153993
Rattus
sp. (Rat) : X66726
Macaca
sp. (Macaque) : XM_001091307
Monodelphis
sp. (Opossum) : XM_001369617
Equus
sp. (Horse) : XM_001495284
Pan
sp. (Chimpanzee) : XM_528214
Canis
sp. (Dog) : XM_539128
Danio
sp. (Zebrafish) : XM_682154
Gallus
sp. (Chicken) : Y18244
HIX0034322
HIT000386813
(
BC113360
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,099,653 - 110,131,761 (32,109)
query : 1 - 1,363 (1,363/1,363)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002120 : Thyrotropin-releasing hormone receptor
GO :
0004997 : Molecular Function : thyrotropin-releasing hormone receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000323178
(
X72089
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,099,726 - 110,131,813 (32,088)
query : 4 - 1,345 (1,342/1,348)
2 exons
identity = 0.996
5'(0.995;0.998)3'
coverage = 0.996
InterPro :
IPR002120 : Thyrotropin-releasing hormone receptor
GO :
0004997 : Molecular Function : thyrotropin-releasing hormone receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000100622
(
D16845
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,099,730 - 110,131,704 (31,975)
query : 1 - 1,229 (1,229/1,229)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002120 : Thyrotropin-releasing hormone receptor
GO :
0004997 : Molecular Function : thyrotropin-releasing hormone receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000398635
(
S75281
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,099,730 - 110,100,665 (936)
query : 1 - 936 (936/936)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002120 : Thyrotropin-releasing hormone receptor
GO :
0004997 : Molecular Function : thyrotropin-releasing hormone receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000254927
(
AY493373
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,099,742 - 110,131,684 (31,943)
query : 1 - 1,197 (1,197/1,197)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002120 : Thyrotropin-releasing hormone receptor
GO :
0004997 : Molecular Function : thyrotropin-releasing hormone receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000323510
(
X75071
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,099,742 - 110,131,684 (31,943)
query : 1 - 1,197 (1,197/1,197)
2 exons
identity = 0.999
5'(0.999;1.000)3'
coverage = 1.000
InterPro :
IPR002120 : Thyrotropin-releasing hormone receptor
GO :
0004997 : Molecular Function : thyrotropin-releasing hormone receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0034322
HIT000398636
(
S75283
)
(Thyrotropin-releasing hormone receptor; TRH-R; Thyroliberin receptor;)
genome : 110,130,344 - 110,132,655 (2,312)
query : 1 - 2,312 (2,312/2,312)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002120 : Thyrotropin-releasing hormone receptor
GO :
0004997 : Molecular Function : thyrotropin-releasing hormone receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034322)
HIX0007725
HIT000052810
(
BC043406
)
(NudC domain-containing protein 1; Chronic myelogenous leukemia tumor antigen 66; Tumor antigen CML66;)
genome : 110,253,148 - 110,346,315 (93,168)
query : 1 - 3,921 (3,921/3,961)
10 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR008978 : HSP20-like chaperone
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 15, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000210956 (
NM_032869
)
(NudC domain-containing protein 1; Chronic myelogenous leukemia tumor antigen 66; Tumor antigen CML66;)
genome : 110,253,148 - 110,346,350 (93,203)
query : 1 - 3,953 (3,953/3,965)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 16.5, nucl 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000559426 (
NM_001128211
)
(NudC domain-containing protein 1 isoform 2.)
genome : 110,253,148 - 110,342,162 (89,015)
query : 1 - 3,853 (3,853/3,865)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, nucl 4.5, mito 3, cysk 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000104985 (
ENST00000239690
)
(NudC domain-containing protein 1; Chronic myelogenous leukemia tumor antigen 66; Tumor antigen CML66;)
genome : 110,253,148 - 110,346,614 (93,467)
query : 1 - 4,217 (4,217/4,217)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 16.5, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000092328
(
BC031258
)
Representative transcript
(NudC domain-containing protein 1 isoform 1.)
genome : 110,254,904 - 110,346,347 (91,444)
query : 2 - 2,285 (2,284/2,300)
11 exons
identity = 0.997
3'(0.997;1.000;0.984;1.000;1.000;0.989;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB168806
Mus
sp. (Mouse) : AK077673
Danio
sp. (Zebrafish) : BC095378
Bos
sp. (Cow) : BC123385
Gallus
sp. (Chicken) : CR406962
Canis
sp. (Dog) : ENSCAFT00000001120
Monodelphis
sp. (Opossum) : ENSMODT00000006191
Oryzias
sp. (Medaka) : ENSORLT00000009983
Pongo
sp. (Orangutan) : ENSPPYT00000021962
Pan
sp. (Chimpanzee) : XM_001136157
Equus
sp. (Horse) : XM_001916024
Rattus
sp. (Rat) : XM_343235
HIX0007725
HIT000027229
(
AL832317
)
(NudC domain-containing protein 1 isoform 2.)
genome : 110,254,904 - 110,305,631 (50,728)
query : 1 - 1,504 (1,504/1,519)
7 exons
identity = 0.996
3'(0.998;1.000;0.984;1.000;1.000;0.984;1.000)5'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR008978 : HSP20-like chaperone
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, mito 5, nucl 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000085938
(
BC000967
)
(NudC domain-containing protein 1; Chronic myelogenous leukemia tumor antigen 66; Tumor antigen CML66;)
genome : 110,254,904 - 110,346,295 (91,392)
query : 1 - 2,142 (2,142/2,156)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR008978 : HSP20-like chaperone
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 16.5, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000076160
(
AF283301
)
(NudC domain-containing protein 1; Chronic myelogenous leukemia tumor antigen 66; Tumor antigen CML66;)
genome : 110,254,904 - 110,346,471 (91,568)
query : 1 - 2,317 (2,317/2,319)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR007052 : CS domain
IPR008978 : HSP20-like chaperone
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 15, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000243651
(
AF521133
)
(NudC domain-containing protein 1 isoform 2.)
genome : 110,254,904 - 110,342,162 (87,259)
query : 1 - 2,096 (2,096/2,098)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR007052 : CS domain
IPR008978 : HSP20-like chaperone
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, nucl 4.5, mito 3, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000076161
(
AF283302
)
(NudC domain-containing protein 1 isoform 2.)
genome : 110,254,904 - 110,342,108 (87,205)
query : 13 - 2,054 (2,042/2,056)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;1.000)5'
coverage = 0.993
InterPro :
IPR007052 : CS domain
IPR008978 : HSP20-like chaperone
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, nucl 4.5, mito 3, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000618957 (
ENST00000519607
)
(NudC domain-containing protein 1; Chronic myelogenous leukemia tumor antigen 66; Tumor antigen CML66;)
genome : 110,254,904 - 110,346,347 (91,444)
query : 1 - 2,286 (2,286/2,286)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000525594 (
ENST00000427660
)
(NudC domain-containing protein 1 isoform 2.)
genome : 110,254,904 - 110,342,163 (87,260)
query : 1 - 2,098 (2,098/2,098)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, nucl 4.5, mito 3, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000011169
(
AK027897
)
(NudC domain-containing protein 1; Chronic myelogenous leukemia tumor antigen 66; Tumor antigen CML66;)
genome : 110,254,905 - 110,346,302 (91,398)
query : 1 - 2,148 (2,148/2,148)
10 exons
identity = 0.999
3'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;0.994)5'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR008978 : HSP20-like chaperone
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 15, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000495902
(
AK301278
)
(NudC domain-containing protein 1 isoform 1.)
genome : 110,254,905 - 110,346,273 (91,369)
query : 2 - 2,211 (2,210/2,211)
11 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;0.994;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000433872
(
AK315006
)
(NudC domain-containing protein 1 isoform 2.)
genome : 110,255,238 - 110,346,319 (91,082)
query : 1 - 1,830 (1,830/1,830)
10 exons
identity = 0.997
3'(1.000;0.988;1.000;1.000;0.995;0.989;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR008978 : HSP20-like chaperone
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 14.5, nucl 5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000426529
(
AK307663
)
(NudC domain-containing protein 1 isoform 2.)
genome : 110,255,244 - 110,342,163 (86,920)
query : 1 - 1,758 (1,758/1,758)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR007052 : CS domain
IPR008978 : HSP20-like chaperone
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, nucl 4.5, mito 3, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000430449
(
AK311583
)
(NudC domain-containing protein 1 isoform 1.)
genome : 110,287,644 - 110,342,121 (54,478)
query : 2 - 1,173 (1,172/1,173)
8 exons
identity = 0.997
3'(1.000;1.000;0.989;1.000;1.000;1.000;1.000;
0.989)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 13, cyto_nucl 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007725
HIT000620756 (
ENST00000521439
)
(NudC domain-containing protein 1 isoform 2.)
genome : 110,287,644 - 110,342,121 (54,478)
query : 1 - 1,172 (1,172/1,172)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 13, cyto_nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007725)
HIX0007726
HIT000013772
(
AK057158
)
Representative transcript
(Conserved hypothetical protein.)
genome : 110,310,827 - 110,328,791 (17,965)
query : 1 - 1,692 (1,692/1,692)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007726)
HIX0007726
HIT000604414 (
ENST00000504175
)
(Conserved hypothetical protein.)
genome : 110,310,827 - 110,328,742 (17,916)
query : 1 - 1,643 (1,643/1,643)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007726)
HIX0168933
HIT000466719_06
(
DQ600188
)
Representative transcript
(Non-protein coding transcript.)
genome : 110,315,539 - 110,315,567 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0168933)
HIX0201274
HIT000002227
(
AF201940
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,570 - 110,355,899 (9,330)
query : 34 - 656 (623/676)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.950
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, cyto_nucl 9, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000207787 (
NM_020189
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,552 - 110,358,189 (11,638)
query : 1 - 2,931 (2,931/2,948)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, cyto_nucl 9, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000655896 (
NM_001193557
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,346,552 - 110,358,189 (11,638)
query : 1 - 2,859 (2,859/2,876)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.1667, cyto 13.5, extr 9, cyto_plas 9,
nucl 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000659565 (
NR_036471
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,552 - 110,358,189 (11,638)
query : 1 - 2,929 (2,929/2,946)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 4.5, cyto_nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000659566 (
NR_036472
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,552 - 110,358,189 (11,638)
query : 1 - 2,976 (2,976/2,993)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 4.5, mito 3, cyto_nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000020506
(
AK095651
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,555 - 110,358,182 (11,628)
query : 3 - 2,968 (2,966/2,968)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR018783 : Transcription factor, enhancer of yellow 2
GO :
0000124 : Cellular Component : SAGA complex
0003713 : Molecular Function : transcription coactivator activity
0005643 : Cellular Component : nuclear pore
0006406 : Biological Process : mRNA export from nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 4.5, mito 3, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000621001 (
ENST00000521688
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,553 - 110,358,181 (11,629)
query : 1 - 2,922 (2,922/2,922)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, cyto_nucl 9, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000620976 (
ENST00000521662
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,346,553 - 110,355,893 (9,341)
query : 1 - 562 (562/562)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.1667, cyto 13.5, extr 9, cyto_plas 9,
nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000622054 (
ENST00000522766
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,346,553 - 110,355,853 (9,301)
query : 1 - 567 (567/567)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto 2.5, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000616713 (
ENST00000517311
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,555 - 110,358,182 (11,628)
query : 1 - 2,966 (2,966/2,966)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 4.5, mito 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000434771
(
AK316560
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,557 - 110,355,710 (9,154)
query : 1 - 447 (447/447)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR018783 : Transcription factor, enhancer of yellow 2
GO :
0000124 : Cellular Component : SAGA complex
0003713 : Molecular Function : transcription coactivator activity
0005643 : Cellular Component : nuclear pore
0006406 : Biological Process : mRNA export from nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, cyto_nucl 9, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000132572 (
ENST00000339942
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,346,568 - 110,355,899 (9,332)
query : 1 - 546 (546/546)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto_nucl 3, nucl 2.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000619490 (
ENST00000520147
)
(Enhancer of yellow 2 transcription factor homolog isoform 1.)
genome : 110,346,573 - 110,356,084 (9,512)
query : 1 - 857 (857/857)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 15.1667, cyto_plas 10, extr 6,
nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000619103 (
ENST00000519754
)
(Enhancer of yellow 2 transcription factor homolog isoform 1.)
genome : 110,346,575 - 110,351,975 (5,401)
query : 1 - 561 (561/561)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 7, cyto_nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000002962
(
AK000487
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,346,576 - 110,355,893 (9,318)
query : 1 - 539 (539/562)
5 exons
identity = 0.998
5'(1.000;0.987;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.1667, cyto 13.5, extr 9, cyto_plas 9,
nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000621704 (
ENST00000522407
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,346,576 - 110,355,900 (9,325)
query : 1 - 541 (541/541)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000621924 (
ENST00000522632
)
(Enhancer of yellow 2 transcription factor homolog isoform 1.)
genome : 110,346,578 - 110,348,817 (2,240)
query : 1 - 587 (587/587)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000622616 (
ENST00000523335
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,580 - 110,356,828 (10,249)
query : 1 - 1,540 (1,540/1,540)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 4.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000067086
(
AF086207
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,588 - 110,355,899 (9,312)
query : 1 - 605 (605/614)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR018783 : Transcription factor, enhancer of yellow 2
GO :
0000124 : Cellular Component : SAGA complex
0003713 : Molecular Function : transcription coactivator activity
0005643 : Cellular Component : nuclear pore
0006406 : Biological Process : mRNA export from nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, cyto_nucl 9, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000617148 (
ENST00000517756
)
(Enhancer of yellow 2 transcription factor homolog isoform 1.)
genome : 110,346,597 - 110,355,894 (9,298)
query : 1 - 445 (445/445)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.1667, cyto 13, extr 9, cyto_plas 8.66667,
nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000617959 (
ENST00000518584
)
(Enhancer of yellow 2 transcription factor homolog isoform 1.)
genome : 110,346,606 - 110,353,037 (6,432)
query : 1 - 566 (566/566)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 4.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000423549
(
AK290752
)
Representative transcript
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,608 - 110,355,944 (9,337)
query : 1 - 631 (631/631)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR018783 : Transcription factor, enhancer of yellow 2
GO :
0000124 : Cellular Component : SAGA complex
0003713 : Molecular Function : transcription coactivator activity
0005643 : Cellular Component : nuclear pore
0006406 : Biological Process : mRNA export from nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, cyto_nucl 9, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK162511
Danio
sp. (Zebrafish) : BC076140
Bos
sp. (Cow) : BC103269
Tetraodon
sp. (Tetraodon) : CR688154
Gallus
sp. (Chicken) : ENSGALT00000035712
Monodelphis
sp. (Opossum) : ENSMODT00000006160
Pongo
sp. (Orangutan) : ENSPPYT00000029367
Takifugu
sp. (Fugu) : SINFRUT00000150331
Rattus
sp. (Rat) : XM_001062468
Macaca
sp. (Macaque) : XM_001087516
Pan
sp. (Chimpanzee) : XM_001135431
Equus
sp. (Horse) : XM_001495427
Gallus
sp. (Chicken) : XM_418387
Canis
sp. (Dog) : XM_532308
HIX0201274
HIT000099447
(
BC051878
)
(Transcription factor, enhancer of yellow 2 family protein.)
genome : 110,346,610 - 110,355,813 (9,204)
query : 1 - 2,151 (2,151/2,175)
4 exons
identity = 0.997
5'(0.997;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR018783 : Transcription factor, enhancer of yellow 2
GO :
0000124 : Cellular Component : SAGA complex
0003713 : Molecular Function : transcription coactivator activity
0005643 : Cellular Component : nuclear pore
0006406 : Biological Process : mRNA export from nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto_mito 11.5, extr 9, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000616751 (
ENST00000517350
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,346,610 - 110,355,813 (9,204)
query : 1 - 2,150 (2,150/2,150)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15.5, cyto_mito 12, extr 9, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000033503
(
BC007870
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,346,636 - 110,355,911 (9,276)
query : 1 - 569 (569/586)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR018783 : Transcription factor, enhancer of yellow 2
GO :
0000124 : Cellular Component : SAGA complex
0003713 : Molecular Function : transcription coactivator activity
0005643 : Cellular Component : nuclear pore
0006406 : Biological Process : mRNA export from nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, cyto_nucl 9, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000622980 (
ENST00000523707
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,348,155 - 110,355,900 (7,746)
query : 1 - 737 (737/737)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 11, cyto_mito 11, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000268033
(
CR457183
)
(Enhancer of yellow 2 transcription factor homolog;)
genome : 110,348,356 - 110,355,710 (7,355)
query : 6 - 306 (301/306)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.984
InterPro :
IPR018783 : Transcription factor, enhancer of yellow 2
GO :
0000124 : Cellular Component : SAGA complex
0003713 : Molecular Function : transcription coactivator activity
0005643 : Cellular Component : nuclear pore
0006406 : Biological Process : mRNA export from nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, cyto_nucl 9, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000057268
(
BX648621
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,350,571 - 110,355,893 (5,323)
query : 1 - 1,384 (1,384/1,549)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR018783 : Transcription factor, enhancer of yellow 2
GO :
0000124 : Cellular Component : SAGA complex
0003713 : Molecular Function : transcription coactivator activity
0005643 : Cellular Component : nuclear pore
0006406 : Biological Process : mRNA export from nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000620934 (
ENST00000521619
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,350,571 - 110,355,893 (5,323)
query : 1 - 1,384 (1,384/1,384)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000054433
(
BX537648
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,352,594 - 110,358,178 (5,585)
query : 1 - 2,745 (2,745/2,764)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR018783 : Transcription factor, enhancer of yellow 2
GO :
0000124 : Cellular Component : SAGA complex
0003713 : Molecular Function : transcription coactivator activity
0005643 : Cellular Component : nuclear pore
0006406 : Biological Process : mRNA export from nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201274
HIT000617504 (
ENST00000518118
)
(Enhancer of yellow 2 transcription factor homolog isoform 2.)
genome : 110,352,594 - 110,358,181 (5,588)
query : 1 - 2,747 (2,747/2,747)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201274)
HIX0201302
HIT000215485 (
NM_177531
)
(Fibrocystin-L; Polycystic kidney and hepatic disease 1-like protein 1; PKHD1-like protein 1; Precursor;)
genome : 110,374,706 - 110,543,500 (168,795)
query : 1 - 14,017 (14,017/14,017)
78 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201302)
HIX0201302
HIT000085332
(
AY219181
)
Representative transcript
(Fibrocystin-L; Polycystic kidney and hepatic disease 1-like protein 1; PKHD1-like protein 1; Precursor;)
genome : 110,374,706 - 110,542,564 (167,859)
query : 1 - 13,081 (13,081/13,081)
78 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.996;1.000;1.000;1.000;
0.994;1.000;1.000;1.000;1.000;1.000;0.999;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR002909 : IPT domain
IPR006626 : Parallel beta-helix repeat
IPR008972 : Cupredoxin
IPR011050 : Pectin lyase fold/virulence factor
IPR011658 : PA14
IPR014756 : Immunoglobulin E-set
IPR019316 : G8 domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201302)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AY219182
Rattus
sp. (Rat) : BC105757
Bos
sp. (Cow) : ENSBTAT00000046400
Equus
sp. (Horse) : ENSECAT00000004637
Oryzias
sp. (Medaka) : ENSORLT00000009944
Takifugu
sp. (Fugu) : SINFRUT00000162185
Monodelphis
sp. (Opossum) : XM_001380558
Danio
sp. (Zebrafish) : XM_001923987
Pan
sp. (Chimpanzee) : XM_520034
Danio
sp. (Zebrafish) : XM_692636
Canis
sp. (Dog) : XM_845403
Macaca
sp. (Macaque) : XR_011134
HIX0201302
HIT000359682 (
ENST00000378402
)
(Fibrocystin-L; Polycystic kidney and hepatic disease 1-like protein 1; PKHD1-like protein 1; Precursor;)
genome : 110,374,706 - 110,542,559 (167,854)
query : 1 - 13,076 (13,076/13,076)
78 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.975;0.884;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.984;0.964;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201302)
HIX0201302
HIT000334587
(
BC093096
)
(Fibrocystin-L precursor.)
genome : 110,374,735 - 110,406,706 (31,972)
query : 1 - 878 (878/909)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR002909 : IPT domain
IPR014756 : Immunoglobulin E-set
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, plas 10, E.R. 5, cysk_plas 5, cyto_plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201302)
HIX0034733
HIT000325012
(
X97671
)
Representative transcript
(Conserved hypothetical protein.)
genome : 110,425,570 - 110,426,116 (547)
query : 37 - 587 (551/609)
1 exon
identity = 0.982
3'(0.982)5'
coverage = 0.935
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, cyto 7, mito_pero 3, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034733)
HIX0208221
HIT000618075_01 (
ENST00000518703
)
(Hypothetical protein.)
genome : 110,482,360 - 110,483,346 (987)
query : 1 - 987 (987/987)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 14, nucl 11, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208221)
HIX0208221
HIT000644531_01 (
ENST00000545486
)
(Hypothetical protein.)
genome : 110,482,723 - 110,482,992 (270)
query : 1 - 270 (270/270)
1 exon
identity = 0.952
5'(0.952)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11, extr 10, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208221)
HIX0201302
HIT000249626
(
AK131338
)
(Fibrocystin-L precursor.)
genome : 110,492,780 - 110,542,489 (49,710)
query : 3 - 3,688 (3,686/3,688)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR006626 : Parallel beta-helix repeat
IPR011050 : Pectin lyase fold/virulence factor
IPR019316 : G8 domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 3.5,
E.R._mito 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201302)
HIX0201302
HIT000625683 (
ENST00000526472
)
(Fibrocystin-L precursor.)
genome : 110,492,780 - 110,542,489 (49,710)
query : 1 - 3,686 (3,686/3,686)
24 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.984;0.964;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 3.5,
E.R._mito 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201302)
HIX0201302
HIT000632269 (
ENST00000533183
)
(Fibrocystin-L precursor.)
genome : 110,509,458 - 110,511,534 (2,077)
query : 1 - 807 (807/807)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, extr 10, mito 8, cyto_nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201302)
HIX0201302
HIT000025107
(
AL133640
)
(Fibrocystin-L precursor.)
genome : 110,523,067 - 110,542,559 (19,493)
query : 1 - 1,516 (1,516/1,699)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;0.993;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, cyto_nucl 10.5, nucl 7, mito 5.5,
E.R._mito 5, E.R. 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201302)
HIX0201302
HIT000633675 (
ENST00000534623
)
(Fibrocystin-L precursor.)
genome : 110,535,052 - 110,539,256 (4,205)
query : 1 - 466 (466/466)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, mito 6, plas 5, nucl 3, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201302)
HIX0007729
HIT000319162 (
NM_198120
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,551,929 - 110,577,390 (25,462)
query : 1 - 1,479 (1,479/1,494)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000423448
(
AK290651
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,551,940 - 110,577,389 (25,450)
query : 1 - 1,466 (1,466/1,466)
7 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000479150 (
ENST00000395785
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,551,940 - 110,577,389 (25,450)
query : 1 - 1,467 (1,467/1,467)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000038108
(
BC017729
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,551,978 - 110,577,194 (25,217)
query : 1 - 1,234 (1,234/1,252)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000628658 (
ENST00000529502
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,551,988 - 110,570,146 (18,159)
query : 1 - 792 (792/792)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 8.5, mito_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000629083 (
ENST00000529931
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,067 - 110,569,256 (17,190)
query : 1 - 413 (413/413)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto 5.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000200979 (
NM_004215
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,310 - 110,577,390 (25,081)
query : 1 - 1,640 (1,640/1,655)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000032319
(
BC005249
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,393 - 110,576,968 (24,576)
query : 1 - 1,135 (1,135/1,163)
7 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000039587
(
BC022506
)
Representative transcript
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,406 - 110,578,224 (25,819)
query : 1 - 2,379 (2,379/2,394)
7 exons
identity = 0.997
5'(0.989;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : AB083366
Macaca
sp. (Macaque) : AB171386
Gallus
sp. (Chicken) : AJ721055
Mus
sp. (Mouse) : AK160149
Danio
sp. (Zebrafish) : BC049504
Rattus
sp. (Rat) : BC087093
Bos
sp. (Cow) : ENSBTAT00000005466
Equus
sp. (Horse) : ENSECAT00000009942
Pongo
sp. (Orangutan) : ENSPPYT00000021963
Tetraodon
sp. (Tetraodon) : GSTENT00013230001
Takifugu
sp. (Fugu) : SINFRUT00000129853
Pan
sp. (Chimpanzee) : XM_001136586
Monodelphis
sp. (Opossum) : XM_001369684
HIX0007729
HIT000130555 (
ENST00000337573
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,406 - 110,578,225 (25,820)
query : 1 - 2,379 (2,379/2,379)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000427816
(
AK308950
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,414 - 110,573,095 (20,682)
query : 2 - 940 (939/940)
7 exons
identity = 0.998
5'(0.996;1.000;1.000;1.000;1.000;0.995;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 8.5, mito_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000626904 (
ENST00000527709
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,414 - 110,573,095 (20,682)
query : 1 - 939 (939/939)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 8.5, mito_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000058140
(
AB007619
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,430 - 110,576,967 (24,538)
query : 9 - 1,104 (1,096/1,104)
7 exons
identity = 0.998
5'(0.992;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000061827
(
AF006265
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,473 - 110,576,967 (24,495)
query : 1 - 1,054 (1,054/1,054)
7 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000255108
(
AY515724
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,513 - 110,576,755 (24,243)
query : 1 - 802 (802/802)
7 exons
identity = 0.999
5'(0.994;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000629774 (
ENST00000530629
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,552,855 - 110,576,737 (23,883)
query : 1 - 706 (706/706)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000633379 (
ENST00000534318
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,562,476 - 110,567,030 (4,555)
query : 1 - 813 (813/813)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000255945
(
AY653072
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,563,054 - 110,576,788 (13,735)
query : 1 - 777 (777/777)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19.5, mito_pero 11, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000267834
(
CR456984
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,563,054 - 110,576,788 (13,735)
query : 1 - 642 (642/642)
6 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.989;0.992)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0007729
HIT000630798 (
ENST00000531677
)
(Receptor-binding cancer antigen expressed on SiSo cells; Cancer-associated surface antigen RCAS1; Estrogen receptor-binding fragment-associated gene 9 protein;)
genome : 110,563,054 - 110,576,788 (13,735)
query : 1 - 777 (777/777)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19.5, mito_pero 11, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007729)
HIX0218028
HIT000029136
(
AL834406
)
(Syntaphilin/Syntabulin family protein.)
genome : 110,586,414 - 110,592,192 (5,779)
query : 1 - 2,144 (2,144/2,160)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, nucl 8, mito 5, plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218028)
HIX0218028
HIT000016241
(
AK091374
)
(Syntabulin isoform d.)
genome : 110,586,415 - 110,592,766 (6,352)
query : 1 - 2,718 (2,718/2,718)
3 exons
identity = 1.000
3'(1.000;1.000;0.999)5'
coverage = 1.000
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 9, plas 6, cyto 4.5, mito 4,
pero 3, extr_plas 3, E.R._mito 3, cysk_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218028)
HIX0218028
HIT000628339 (
ENST00000529175
)
(Syntaphilin/Syntabulin family protein.)
genome : 110,586,415 - 110,592,766 (6,352)
query : 1 - 2,717 (2,717/2,717)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 9, plas 6, cyto 4.5, mito 4,
pero 3, extr_plas 3, E.R._mito 3, cysk_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218028)
HIX0218028
HIT000628845 (
ENST00000529690
)
(Syntaphilin/Syntabulin family protein.)
genome : 110,586,882 - 110,620,304 (33,423)
query : 1 - 1,983 (1,983/1,983)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R._mito 7.66667, E.R. 7.5, mito_pero 6.5, pero 6,
cyto 5, mito 4.5, plas 3.5, extr_plas 3.5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218028)
HIX0218028
HIT000491806
(
AK297182
)
Representative transcript
(Syntabulin isoform d.)
genome : 110,586,882 - 110,620,221 (33,340)
query : 2 - 1,901 (1,900/1,901)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R._mito 7.66667, E.R. 7.5, mito_pero 6.5, pero 6,
cyto 5, mito 4.5, plas 3.5, extr_plas 3.5, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218028)
HIX0218028
HIT000632475 (
ENST00000533394
)
(Syntaphilin/Syntabulin family protein.)
genome : 110,588,204 - 110,615,683 (27,480)
query : 1 - 594 (594/594)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, extr 6, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218028)
HIX0218028
HIT000626902 (
ENST00000527707
)
(Syntaphilin/Syntabulin family protein.)
genome : 110,588,204 - 110,593,287 (5,084)
query : 1 - 573 (573/573)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, extr 9, mito 6, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218028)
HIX0218028
HIT000631693 (
ENST00000532594
)
(Syntaphilin/Syntabulin family protein.)
genome : 110,590,125 - 110,620,229 (30,105)
query : 1 - 562 (562/562)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 6.16667, nucl 6, mito 5, cyto 4,
cyto_pero 3.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218028)
HIX0218028
HIT000627907 (
ENST00000528735
)
(Conserved hypothetical protein.)
genome : 110,592,141 - 110,598,758 (6,618)
query : 1 - 561 (561/561)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 7.5, nucl 7, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218028)
HIX0218028
HIT000625944 (
ENST00000526736
)
(Conserved hypothetical protein.)
genome : 110,597,951 - 110,620,228 (22,278)
query : 1 - 530 (530/530)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 12, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218028)
HIX0218170
HIT000630415 (
ENST00000531284
)
(Conserved hypothetical protein.)
genome : 110,631,040 - 110,657,008 (25,969)
query : 1 - 578 (578/578)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 8, nucl 6, extr_plas 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218170)
HIX0218170
HIT000623972 (
ENST00000524720
)
(Syntaphilin/Syntabulin family protein.)
genome : 110,631,086 - 110,661,195 (30,110)
query : 1 - 748 (748/748)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, mito 8, nucl 6, cyto_mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218170)
HIX0218170
HIT000633246 (
ENST00000534184
)
(Syntaphilin/Syntabulin family protein.)
genome : 110,631,184 - 110,693,153 (61,970)
query : 1 - 582 (582/582)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 11, cyto_nucl 10.5, cyto 6, extr_plas 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218170)
HIX0218170
HIT000627888 (
ENST00000528716
)
(Syntabulin family protein.)
genome : 110,631,213 - 110,693,041 (61,829)
query : 1 - 565 (565/565)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, extr 9, cyto_nucl 8.5, mito 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218170)
HIX0218170
HIT000633633 (
ENST00000534578
)
(Syntabulin family protein.)
genome : 110,654,957 - 110,703,834 (48,878)
query : 1 - 559 (559/559)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto_nucl 11, extr 8, cyto 7, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218170)
HIX0218170
HIT000625516 (
ENST00000526302
)
(Syntabulin family protein.)
genome : 110,654,957 - 110,661,091 (6,135)
query : 1 - 582 (582/582)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto_nucl 11, extr 8, cyto 7, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218170)
HIX0218170
HIT000626797 (
ENST00000527600
)
(Syntaphilin/Syntabulin family protein.)
genome : 110,654,965 - 110,693,057 (38,093)
query : 1 - 559 (559/559)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto_nucl 11, nucl 10.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218170)
HIX0007731
HIT000018810
(
AK093952
)
Representative transcript
(Conserved hypothetical protein.)
genome : 110,656,344 - 110,660,313 (3,970)
query : 2 - 3,076 (3,075/3,076)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.3333, cyto 8.5, nucl 8, mito 8,
cyto_pero 6.66667, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007731)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : XM_882452
HIX0007731
HIT000602167 (
ENST00000499579
)
(Conserved hypothetical protein.)
genome : 110,656,344 - 110,660,313 (3,970)
query : 1 - 3,075 (3,075/3,075)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.8333, cyto 10.5, cyto_pero 7.66667,
mito_nucl 7.66667, nucl 7, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007731)
HIX0209055
HIT000629903 (
ENST00000530760
)
(DNA/RNA-binding domain, Est1-type containing protein.)
genome : 110,790,141 - 110,794,517 (4,377)
query : 1 - 2,978 (2,978/2,978)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11.5, extr 9, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209055)
HIX0007730
HIT000632968 (
ENST00000533895
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,207 - 110,661,065 (74,859)
query : 1 - 3,244 (3,244/3,244)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485434 (
NM_001099743
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,704,020 (117,615)
query : 1 - 3,234 (3,234/3,248)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485435 (
NM_001099744
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,704,020 (117,615)
query : 1 - 3,237 (3,237/3,251)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485436 (
NM_001099745
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,693,234 (106,829)
query : 1 - 3,073 (3,073/3,087)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485437 (
NM_001099746
)
(Syntabulin isoform d.)
genome : 110,586,406 - 110,693,234 (106,829)
query : 1 - 2,787 (2,787/2,801)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 7, pero 5, cyto_mito 5, mito 3,
plas 2.5, extr_plas 2.5, E.R._mito 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000206653 (
NM_017786
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,661,132 (74,727)
query : 1 - 3,112 (3,112/3,126)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485438 (
NM_001099747
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,661,132 (74,727)
query : 1 - 2,991 (2,991/3,005)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485439 (
NM_001099748
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,661,132 (74,727)
query : 1 - 2,994 (2,994/3,008)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485440 (
NM_001099749
)
(Syntabulin isoform d.)
genome : 110,586,406 - 110,661,132 (74,727)
query : 1 - 2,708 (2,708/2,722)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 7, pero 5, cyto_mito 5, mito 3,
plas 2.5, extr_plas 2.5, E.R._mito 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485441 (
NM_001099750
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,661,132 (74,727)
query : 1 - 3,115 (3,115/3,129)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485442 (
NM_001099751
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,657,822 (71,417)
query : 1 - 3,080 (3,080/3,094)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485443 (
NM_001099752
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,657,822 (71,417)
query : 1 - 3,083 (3,083/3,097)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485444 (
NM_001099753
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,657,051 (70,646)
query : 1 - 2,881 (2,881/2,895)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485445 (
NM_001099754
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,406 - 110,657,051 (70,646)
query : 1 - 2,884 (2,884/2,898)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485446 (
NM_001099755
)
(Syntabulin isoform d.)
genome : 110,586,406 - 110,657,051 (70,646)
query : 1 - 2,679 (2,679/2,693)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 7, pero 5, cyto_mito 5, mito 3,
plas 2.5, extr_plas 2.5, E.R._mito 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000485447 (
NM_001099756
)
(Syntabulin isoform c.)
genome : 110,586,406 - 110,655,419 (69,014)
query : 1 - 2,955 (2,955/2,969)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 8, cyto_plas 8, nucl 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000002848
(
AK000373
)
(Syntabulin isoform c.)
genome : 110,586,414 - 110,703,833 (117,420)
query : 3 - 2,756 (2,754/2,774)
6 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;0.993)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, nucl 7, cyto_mito 7, cyto_pero 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000242565
(
AB195676
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,416 - 110,661,065 (74,650)
query : 1 - 3,035 (3,035/3,055)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.999
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000026570
(
AL713645
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,416 - 110,661,008 (74,593)
query : 1 - 2,996 (2,996/3,016)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.989)5'
coverage = 0.999
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_mito 8, plas 7.5, extr_plas 5, nucl 4,
mito 3.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000631873 (
ENST00000532779
)
(Syntabulin isoform d.)
genome : 110,586,405 - 110,703,833 (117,429)
query : 1 - 2,765 (2,765/2,765)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, nucl 7, cyto_mito 7, cyto_pero 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000522092 (
ENST00000424158
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,405 - 110,661,008 (74,604)
query : 1 - 3,007 (3,007/3,007)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_mito 8, plas 7.5, extr_plas 5, nucl 4,
mito 3.5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000242566
(
AB195677
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,411 - 110,661,065 (74,655)
query : 1 - 2,919 (2,919/2,920)
8 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000242567
(
AB195678
)
(Syntabulin isoform d.)
genome : 110,586,411 - 110,661,065 (74,655)
query : 1 - 2,636 (2,636/2,637)
6 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 7, pero 5, cyto_mito 5, mito 3,
plas 2.5, extr_plas 2.5, E.R._mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000242568
(
AB195679
)
(Syntabulin isoform c.)
genome : 110,586,411 - 110,655,904 (69,494)
query : 1 - 3,435 (3,435/3,436)
6 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 8, cyto_plas 8, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000544004 (
ENST00000446070
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,411 - 110,661,065 (74,655)
query : 1 - 2,919 (2,919/2,919)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000627512 (
ENST00000528331
)
(Syntabulin isoform d.)
genome : 110,586,411 - 110,661,065 (74,655)
query : 1 - 2,636 (2,636/2,636)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 7, pero 5, cyto_mito 5, mito 3,
plas 2.5, extr_plas 2.5, E.R._mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000482177 (
ENST00000399066
)
(Syntabulin isoform c.)
genome : 110,586,411 - 110,655,904 (69,494)
query : 1 - 3,435 (3,435/3,435)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 8, cyto_plas 8, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000011860
(
AK055246
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,415 - 110,657,746 (71,332)
query : 1 - 2,995 (2,995/2,995)
8 exons
identity = 0.999
3'(1.000;1.000;0.990;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 11, mito 8, cyto 6.5, extr 4,
E.R._mito 4, mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000627821 (
ENST00000528647
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,415 - 110,657,746 (71,332)
query : 1 - 2,995 (2,995/2,995)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000021413
(
AK096558
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,415 - 110,657,046 (70,632)
query : 1 - 2,870 (2,870/2,870)
7 exons
identity = 0.999
3'(0.999;1.000;0.995;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000111467 (
ENST00000276646
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,415 - 110,657,046 (70,632)
query : 1 - 2,870 (2,870/2,870)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000001187
(
AB040905
)
(Syntabulin isoform d.)
genome : 110,586,415 - 110,655,001 (68,587)
query : 1 - 2,528 (2,528/2,528)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 7, pero 5, cyto_mito 5, mito 3,
plas 2.5, extr_plas 2.5, E.R._mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000517033 (
ENST00000419099
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,417 - 110,704,020 (117,604)
query : 1 - 3,223 (3,223/3,223)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8, cyto 7, nucl 6, mito 6, mito_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000520069 (
ENST00000422135
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,417 - 110,704,020 (117,604)
query : 1 - 3,226 (3,226/3,226)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000506931 (
ENST00000408889
)
(Syntabulin isoform d.)
genome : 110,586,417 - 110,693,234 (106,818)
query : 1 - 2,776 (2,776/2,776)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 7, pero 5, cyto_mito 5, mito 3,
plas 2.5, extr_plas 2.5, E.R._mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000506949 (
ENST00000408908
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,417 - 110,661,132 (74,716)
query : 1 - 2,983 (2,983/2,983)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000531572 (
ENST00000433638
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,417 - 110,661,132 (74,716)
query : 1 - 3,104 (3,104/3,104)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000538244 (
ENST00000440310
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,417 - 110,657,822 (71,406)
query : 1 - 3,072 (3,072/3,072)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000035643
(
BC012082
)
(Syntabulin isoform d.)
genome : 110,586,437 - 110,657,026 (70,590)
query : 1 - 2,623 (2,623/2,643)
6 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 7, pero 5, cyto_mito 5, mito 3,
plas 2.5, extr_plas 2.5, E.R._mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000632151 (
ENST00000533065
)
(Syntabulin isoform d.)
genome : 110,586,435 - 110,657,046 (70,612)
query : 1 - 2,645 (2,645/2,645)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 7, pero 5, cyto_mito 5, mito 3,
plas 2.5, extr_plas 2.5, E.R._mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000015426
(
AK090559
)
(Syntabulin isoform d.)
genome : 110,586,438 - 110,657,046 (70,609)
query : 1 - 2,642 (2,642/2,642)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, cyto 7, pero 5, cyto_mito 5, mito 3,
plas 2.5, extr_plas 2.5, E.R._mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000423266
(
AK290469
)
Representative transcript
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,981 - 110,693,234 (106,254)
query : 1 - 2,498 (2,498/2,498)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172612
Mus
sp. (Mouse) : AB232447
Bos
sp. (Cow) : BC119820
Danio
sp. (Zebrafish) : BC124210
Pongo
sp. (Orangutan) : ENSPPYT00000021964
Takifugu
sp. (Fugu) : SINFRUT00000129850
Rattus
sp. (Rat) : XM_001064007
Monodelphis
sp. (Opossum) : XM_001369717
Equus
sp. (Horse) : XM_001495249
Pan
sp. (Chimpanzee) : XM_528216
Canis
sp. (Dog) : XM_532310
HIX0007730
HIT000632257 (
ENST00000533171
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,586,981 - 110,693,234 (106,254)
query : 1 - 2,498 (2,498/2,498)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000257313
(
AY705385
)
(Syntabulin; Golgi-localized syntaphilin-related protein; Syntaxin-1-binding protein;)
genome : 110,587,135 - 110,656,888 (69,754)
query : 1 - 1,992 (1,992/1,992)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026198 : Syntabulin
IPR028197 : Syntaphilin/Syntabulin
GO :
0017075 : Molecular Function : syntaxin-1 binding
0019894 : Molecular Function : kinesin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 7, cyto_mito 7, nucl 6, cyto_pero 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000627235 (
ENST00000528045
)
(Syntabulin isoform d.)
genome : 110,592,028 - 110,660,975 (68,948)
query : 1 - 564 (564/564)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12, cyto 9.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000626859 (
ENST00000527664
)
(Syntabulin isoform d.)
genome : 110,592,038 - 110,693,103 (101,066)
query : 1 - 556 (556/556)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, nucl 7, cyto 7, cyto_nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000628354 (
ENST00000529190
)
(Syntabulin isoform a.)
genome : 110,592,147 - 110,704,018 (111,872)
query : 1 - 1,126 (1,126/1,126)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 10, mito 8, cyto 6, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000631299 (
ENST00000532189
)
(Syntabulin isoform d.)
genome : 110,592,165 - 110,693,144 (100,980)
query : 1 - 573 (573/573)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 12.5, cyto 7.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000627746 (
ENST00000528569
)
(Syntabulin isoform c.)
genome : 110,592,165 - 110,655,655 (63,491)
query : 1 - 558 (558/558)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 12.5, cyto 7.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000632895 (
ENST00000533821
)
(Syntabulin isoform a.)
genome : 110,598,328 - 110,692,448 (94,121)
query : 1 - 575 (575/575)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, nucl 8.5, cyto_nucl 7.5, mito 7, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000629982 (
ENST00000530841
)
(Syntabulin isoform c.)
genome : 110,598,356 - 110,657,747 (59,392)
query : 1 - 545 (545/545)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 9.5, cyto_nucl 8, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000630363 (
ENST00000531230
)
(Syntabulin isoform c.)
genome : 110,598,359 - 110,693,143 (94,785)
query : 1 - 516 (516/516)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 6, nucl 2, mito 2, lyso 2, golg 2,
mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
HIX0007730
HIT000633557 (
ENST00000534501
)
(Syntabulin isoform a.)
genome : 110,598,364 - 110,657,618 (59,255)
query : 1 - 613 (613/613)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 8, nucl 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007730)
AP001331.1
109200001-109228025 O +
NCBI
AC087620.6
109228026-109382059 F +
NCBI
AP002088.2
109382060-109463661 O +
NCBI
AC022634.8
109463662-109625263 F +
NCBI
AC025962.5
109625264-109781016 F -
NCBI
AC104247.5
109781017-109887215 F -
NCBI
AC104248.3
109887216-110079092 F +
NCBI
AC104945.4
110079093-110234384 F -
NCBI
AC021237.5
110234385-110392142 F -
NCBI
AC021001.5
110392143-110543375 F -
NCBI
AP000427.3
110543376-110554470 O +
NCBI
AC079061.8
110554471-110756862 F -
NCBI
AC023245.5
110756863-110800000 F -
NCBI