Clickable map CGI

HIX0058177
HIT000105144 ( ENST00000241802 )
  (HLA class II histocompatibility antigen, DQ alpha 2 chain; DX alpha chain; HLA class II histocompatibility antigen, DQ(6) alpha chain; HLA-DQA1; MHC class II DQA2; Precursor;)
  genome : 4,046,301 - 4,052,169 (5,869)
  query : 1 - 1,517 (1,517/1,517)
  5 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 17, extr 10, E.R. 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0058177)

HIX0058177
HIT000196909_05 ( M95727 )
  Representative transcript
  (Similar to HLA class II histocompatibility antigen, DQ alpha 2 chain; DX alpha chain; HLA class II histocompatibility antigen, DQ(6) alpha chain; HLA-DQA1; MHC class II DQA2; Precursor;)
  genome : 4,050,140 - 4,050,364 (225)
  query : 1 - 225 (225/225)
  1 exon
  identity = 0.987
  5'(0.987)3'
  coverage = 1.000
  InterPro :
    IPR001003 : MHC class II, alpha chain, N-terminal
    IPR011162 : MHC classes I/II-like antigen recognition protein
    IPR014745 : MHC class II, alpha/beta chain, N-terminal
  GO :
    0006955 : Biological Process : immune response
    0016020 : Cellular Component : membrane
    0019882 : Biological Process : antigen processing and presentation
    0042613 : Cellular Component : MHC class II protein complex
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 15.5, cyto_nucl 13.5, nucl 10.5, extr 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0058177)
  Ortholog candidate  ( -> Evola )
    Mus sp. (Mouse) : AK002532
    Canis sp. (Dog) : U42407

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )