Clickable map CGI

HIX0005752
HIT000540894 ( ENST00000442960 )
  (HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;)
  genome : 3,749,707 - 3,754,888 (5,182)
  query : 1 - 1,250 (1,250/1,250)
  5 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    This sequence is too short.
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0005752)

HIX0005752
HIT000564664_04 ( ENST00000459705 )
  (Similar to HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;)
  genome : 3,749,709 - 3,752,537 (2,829)
  query : 1 - 285 (285/291)
  2 exons
  identity = 0.990
  5'(0.988;0.992)3'
  coverage = 0.979
  InterPro :
    IPR001003 : MHC class II, alpha chain, N-terminal
    IPR011162 : MHC classes I/II-like antigen recognition protein
    IPR014745 : MHC class II, alpha/beta chain, N-terminal
  GO :
    0006955 : Biological Process : immune response
    0016020 : Cellular Component : membrane
    0019882 : Biological Process : antigen processing and presentation
    0042613 : Cellular Component : MHC class II protein complex
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 30
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0005752)

HIX0005752
HIT000567046_04 ( ENST00000462200 )
  (Similar to HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;)
  genome : 3,749,709 - 3,752,537 (2,829)
  query : 1 - 285 (285/291)
  2 exons
  identity = 0.990
  5'(0.988;0.992)3'
  coverage = 0.979
  InterPro :
    IPR001003 : MHC class II, alpha chain, N-terminal
    IPR011162 : MHC classes I/II-like antigen recognition protein
    IPR014745 : MHC class II, alpha/beta chain, N-terminal
  GO :
    0006955 : Biological Process : immune response
    0016020 : Cellular Component : membrane
    0019882 : Biological Process : antigen processing and presentation
    0042613 : Cellular Component : MHC class II protein complex
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 30
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0005752)

HIX0005752
HIT000585897_04 ( ENST00000481943 )
  (Similar to HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;)
  genome : 3,749,709 - 3,752,537 (2,829)
  query : 1 - 285 (285/291)
  2 exons
  identity = 0.990
  5'(0.988;0.992)3'
  coverage = 0.979
  InterPro :
    IPR001003 : MHC class II, alpha chain, N-terminal
    IPR011162 : MHC classes I/II-like antigen recognition protein
    IPR014745 : MHC class II, alpha/beta chain, N-terminal
  GO :
    0006955 : Biological Process : immune response
    0016020 : Cellular Component : membrane
    0019882 : Biological Process : antigen processing and presentation
    0042613 : Cellular Component : MHC class II protein complex
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 30
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0005752)

HIX0005752
HIT000586697_04 ( ENST00000482781 )
  (Similar to HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;)
  genome : 3,749,709 - 3,752,537 (2,829)
  query : 1 - 285 (285/291)
  2 exons
  identity = 0.990
  5'(0.988;0.992)3'
  coverage = 0.979
  InterPro :
    IPR001003 : MHC class II, alpha chain, N-terminal
    IPR011162 : MHC classes I/II-like antigen recognition protein
    IPR014745 : MHC class II, alpha/beta chain, N-terminal
  GO :
    0006955 : Biological Process : immune response
    0016020 : Cellular Component : membrane
    0019882 : Biological Process : antigen processing and presentation
    0042613 : Cellular Component : MHC class II protein complex
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 30
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0005752)

HIX0005752
HIT000641594_03 ( ENST00000542549 )
  (HLA class II histocompatibility antigen, DR alpha chain precursor.)
  genome : 3,749,721 - 3,754,888 (5,168)
  query : 1 - 919 (919/919)
  4 exons
  identity = 0.995
  5'(1.000;1.000;0.994;0.990)3'
  coverage = 1.000
  InterPro :
    IPR001003 : MHC class II, alpha chain, N-terminal
    IPR011162 : MHC classes I/II-like antigen recognition protein
    IPR014745 : MHC class II, alpha/beta chain, N-terminal
  GO :
    0006955 : Biological Process : immune response
    0016020 : Cellular Component : membrane
    0019882 : Biological Process : antigen processing and presentation
    0042613 : Cellular Component : MHC class II protein complex
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 30
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0005752)

HIX0005752
HIT000191059_06 ( J00197 )
  (Similar to HLA class II histocompatibility antigen, DR alpha chain; MHC class II antigen DRA; Precursor;)
  genome : 3,749,760 - 3,752,317 (2,558)
  query : 1 - 144 (144/144)
  2 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 32
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0005752)

HIX0005752
HIT000195653_07 ( M35979 )
  (MHC class II HLA-DR-alpha chain; Precursor; Fragment;)
  genome : 3,749,781 - 3,752,351 (2,571)
  query : 1 - 157 (157/157)
  2 exons
  identity = 0.994
  5'(0.989;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 30
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0005752)

HIX0005752
HIT000191055_07 ( J00193 )
  (Non-protein coding transcript.)
  genome : 3,752,282 - 3,752,327 (46)
  query : 6 - 51 (46/51)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 0.902
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0005752)

CR354545.5
3744284-3760283 F +
NCBI

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )