Clickable map CGI

HIX0027959
HIT000520797 ( ENST00000422863 )
  (Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.)
  genome : 32,595,956 - 32,605,308 (9,353)
  query : 1 - 520 (520/520)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 16.5, cyto_nucl 12, extr 11, nucl 4.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000046294 ( AK126421 )
  (Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.)
  genome : 32,604,954 - 32,607,008 (2,055)
  query : 1 - 2,054 (2,054/2,054)
  1 exon
  identity = 0.998
  5'(0.998)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 28, plas 1, nucl 1, cyto 1, mito 1, cyto_nucl 1,
    cyto_mito 1, cyto_plas 1, mito_nucl 1
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000478743 ( ENST00000395364 )
  (HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.)
  genome : 32,605,134 - 32,611,429 (6,296)
  query : 1 - 1,385 (1,385/1,385)
  5 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 17, pero 8, plas 3, lyso 2
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000478742 ( ENST00000395363 )
  (HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.)
  genome : 32,605,178 - 32,611,429 (6,252)
  query : 1 - 1,206 (1,206/1,206)
  5 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 17, pero 8, plas 3, lyso 2
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000599190 ( ENST00000495840 )
  (Similar to MHC class II HLA-DQ-alpha chain; Fragment;)
  genome : 32,605,201 - 32,610,017 (4,817)
  query : 1 - 733 (733/733)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001003 : MHC class II, alpha chain, N-terminal
    IPR011162 : MHC classes I/II-like antigen recognition protein
    IPR014745 : MHC class II, alpha/beta chain, N-terminal
  GO :
    0006955 : Biological Process : immune response
    0016020 : Cellular Component : membrane
    0019882 : Biological Process : antigen processing and presentation
    0042613 : Cellular Component : MHC class II protein complex
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 28, nucl 1, mito 1, E.R. 1, lyso 1, E.R._mito 1,
    mito_nucl 1
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000099434 ( BC051832 )
  Representative transcript
  (Similar to MHC class II antigen;)
  genome : 32,605,204 - 32,611,038 (5,835)
  query : 1 - 2,124 (2,124/2,203)
  6 exons
  identity = 0.992
  5'(0.974;0.992;0.996;1.000;0.983;0.990)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    cyto 11.5, cyto_nucl 7.5, mito 7, plas 5, pero 5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)
  Ortholog candidate  ( -> Evola )
    Bos sp. (Cow) : AF037314
    Danio sp. (Zebrafish) : L19445
    Equus sp. (Horse) : NM_001142812
    Rattus sp. (Rat) : X14879
    Monodelphis sp. (Opossum) : XM_001376727

HIX0027959
HIT000586664 ( ENST00000482745 )
  (Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.)
  genome : 32,605,204 - 32,611,049 (5,846)
  query : 1 - 2,135 (2,135/2,135)
  6 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001003 : MHC class II, alpha chain, N-terminal
    IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
    IPR003597 : Immunoglobulin C1-set
    IPR007110 : Immunoglobulin-like
    IPR011162 : MHC classes I/II-like antigen recognition protein
    IPR013783 : Immunoglobulin-like fold
    IPR014745 : MHC class II, alpha/beta chain, N-terminal
  GO :
    0005515 : Molecular Function : protein binding
    0006955 : Biological Process : immune response
    0016020 : Cellular Component : membrane
    0019882 : Biological Process : antigen processing and presentation
    0042613 : Cellular Component : MHC class II protein complex
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    cyto 11.5, cyto_nucl 7.5, mito 7, plas 5, pero 5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000193902 ( L46875 )
  (Non-protein coding transcript.)
  genome : 32,605,236 - 32,605,317 (82)
  query : 1 - 82 (82/82)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000193903_05 ( L46876 )
  (Non-protein coding transcript.)
  genome : 32,605,236 - 32,605,317 (82)
  query : 1 - 82 (82/82)
  1 exon
  identity = 0.963
  5'(0.963)3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000193904 ( L46877 )
  (Non-protein coding transcript.)
  genome : 32,605,236 - 32,605,317 (82)
  query : 1 - 82 (82/82)
  1 exon
  identity = 0.976
  5'(0.976)3'
  coverage = 1.000
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000217531 ( U03889 )
  (Conserved hypothetical protein.)
  genome : 32,606,791 - 32,607,327 (537)
  query : 1 - 537 (537/537)
  1 exon
  identity = 0.991
  5'(0.991)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 30
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000590296 ( ENST00000486548 )
  (Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.)
  genome : 32,609,087 - 32,611,049 (1,963)
  query : 1 - 646 (646/646)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR001003 : MHC class II, alpha chain, N-terminal
    IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
    IPR003597 : Immunoglobulin C1-set
    IPR007110 : Immunoglobulin-like
    IPR011162 : MHC classes I/II-like antigen recognition protein
    IPR013783 : Immunoglobulin-like fold
    IPR014745 : MHC class II, alpha/beta chain, N-terminal
  GO :
    0005515 : Molecular Function : protein binding
    0006955 : Biological Process : immune response
    0016020 : Cellular Component : membrane
    0019882 : Biological Process : antigen processing and presentation
    0042613 : Cellular Component : MHC class II protein complex
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, cyto_nucl 13, nucl 5.5, extr 2, lyso 2,
    cysk 2
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000194598 ( M17846 )
  (Similar to HLA class II histocompatibility antigen, DQ alpha 1 chain precursor.)
  genome : 32,609,770 - 32,611,019 (1,250)
  query : 1 - 727 (727/728)
  3 exons
  identity = 0.996
  5'(1.000;1.000;0.990)3'
  coverage = 0.999
  InterPro :
    IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
    IPR003597 : Immunoglobulin C1-set
    IPR007110 : Immunoglobulin-like
    IPR013783 : Immunoglobulin-like fold
  GO :
    0005515 : Molecular Function : protein binding
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 17, extr 10, pero 4
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000194599 ( M17847 )
  (HLA-DQA2 protein; Fragment;)
  genome : 32,609,770 - 32,611,019 (1,250)
  query : 1 - 727 (727/728)
  3 exons
  identity = 0.986
  5'(0.985;0.989;0.986)3'
  coverage = 0.999
  InterPro :
    IPR003006 : Immunoglobulin/major histocompatibility complex, conserved site
    IPR003597 : Immunoglobulin C1-set
    IPR007110 : Immunoglobulin-like
    IPR013783 : Immunoglobulin-like fold
  GO :
    0005515 : Molecular Function : protein binding
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 17, extr 11, pero 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081356 ( AF533895 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,429 (933)
  query : 1 - 933 (933/933)
  1 exon
  identity = 0.992
  5'(0.992)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 12, cyto 12, cyto_nucl 10.5, nucl 5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081357 ( AF533896 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,429 (933)
  query : 1 - 932 (932/932)
  1 exon
  identity = 0.994
  5'(0.994)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 12, cyto 10.5, cyto_nucl 7, cysk 4, nucl 2.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081358 ( AF533897 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,429 (933)
  query : 1 - 933 (933/933)
  1 exon
  identity = 0.992
  5'(0.992)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 12, cyto 12, cyto_nucl 10.5, nucl 5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081367 ( AF533906 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,429 (933)
  query : 1 - 766 (766/766)
  2 exons
  identity = 0.993
  5'(1.000;0.993)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    mito 13.5, extr 12, mito_pero 7.5, cyto 3.5,
    cyto_nucl 2.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081368 ( AF533907 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,429 (933)
  query : 1 - 765 (765/765)
  2 exons
  identity = 0.992
  5'(1.000;0.991)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    mito 13.5, extr 12, mito_pero 7.5, cyto 3.5,
    cyto_nucl 2.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081369 ( AF533908 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,429 (933)
  query : 1 - 766 (766/766)
  2 exons
  identity = 0.992
  5'(0.985;0.993)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, mito 13, cyto 5.5, cyto_nucl 3.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081390 ( AF533929 )
  (Hypothetical short protein.)
  genome : 32,610,497 - 32,611,429 (933)
  query : 1 - 425 (425/425)
  2 exons
  identity = 0.998
  5'(1.000;0.997)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, cyto 12.5, cyto_plas 7, nucl 4
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081391 ( AF533930 )
  (Hypothetical short protein.)
  genome : 32,610,497 - 32,611,429 (933)
  query : 1 - 425 (425/425)
  2 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, cyto 12.5, cyto_plas 7, nucl 4
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081392 ( AF533931 )
  (Hypothetical short protein.)
  genome : 32,610,497 - 32,611,429 (933)
  query : 1 - 425 (425/425)
  2 exons
  identity = 0.993
  5'(0.985;0.994)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 17, cyto 10, nucl 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081362 ( AF533901 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,047 (551)
  query : 1 - 551 (551/551)
  1 exon
  identity = 0.987
  5'(0.987)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 16, cyto 8, extr_plas 8, cyto_nucl 7.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081373 ( AF533912 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,047 (551)
  query : 1 - 384 (384/384)
  2 exons
  identity = 0.992
  5'(1.000;0.991)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    mito 13.5, extr 12, mito_pero 7.5, cyto 3.5,
    cyto_nucl 2.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081374 ( AF533913 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,047 (551)
  query : 1 - 383 (383/383)
  2 exons
  identity = 0.984
  5'(1.000;0.981)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    mito 13.5, extr 12, mito_pero 7.5, cyto 3.5,
    cyto_nucl 2.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081375 ( AF533914 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,047 (551)
  query : 1 - 384 (384/384)
  2 exons
  identity = 0.990
  5'(0.985;0.991)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, mito 13, cyto 5.5, cyto_nucl 3.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081398 ( AF533937 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,047 (551)
  query : 1 - 551 (551/551)
  1 exon
  identity = 0.991
  5'(0.991)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 12, cyto 12, cyto_nucl 10.5, nucl 5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081400 ( AF533939 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,047 (551)
  query : 1 - 550 (550/550)
  1 exon
  identity = 0.989
  5'(0.989)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 12, cyto 10.5, cyto_nucl 7, cysk 4, nucl 2.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0027959
HIT000081399 ( AF533938 )
  (Hypothetical protein.)
  genome : 32,610,497 - 32,611,042 (546)
  query : 1 - 546 (546/546)
  1 exon
  identity = 0.991
  5'(0.991)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 12, cyto 12, cyto_nucl 10.5, nucl 5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0027959)

HIX0078231
HIT000022152 ( AK097297 )
  (Similar to Cell surface glycoprotein; Fragment;)
  genome : 32,624,995 - 32,627,288 (2,294)
  query : 1 - 2,291 (2,291/2,291)
  1 exon
  identity = 0.984
  3'(0.984)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 29
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0078231)

HIX0078388
HIT000243657 ( AF522251 )
  genome : 32,546,823 - 32,634,404 (87,582)
  query : 4 - 878 (875/878)
  6 exons
  identity = 0.959
  3'()5'
  coverage = 0.997
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0078388)

AL662789.11
32585397-32625396 F +
NCBI

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )