bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0004705
HIT000612556 (
ENST00000512944
)
(Exocyst complex component 3.)
genome : 443,273 - 467,411 (24,139)
query : 1 - 2,825 (2,825/2,825)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 12.5, nucl 4, mito 4, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000203780 (
NM_007277
)
(Exocyst complex component 3.)
genome : 443,334 - 467,408 (24,075)
query : 1 - 2,761 (2,761/2,774)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 12.5, nucl 4, mito 4, cysk 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000649057
(
GU727644
)
Representative transcript
(Exocyst complex component 3.)
genome : 443,334 - 467,408 (24,075)
query : 1 - 2,761 (2,761/2,774)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 12.5, nucl 4, mito 4, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB179175
Gallus
sp. (Chicken) : AJ720579
Mus
sp. (Mouse) : AK141537
Danio
sp. (Zebrafish) : BC045435
Rattus
sp. (Rat) : BC097993
Bos
sp. (Cow) : BT026297
Pongo
sp. (Orangutan) : CR859834
Tetraodon
sp. (Tetraodon) : GSTENT00033642001
Takifugu
sp. (Fugu) : SINFRUT00000154961
Monodelphis
sp. (Opossum) : XM_001368773
Equus
sp. (Horse) : XM_001489760
Pan
sp. (Chimpanzee) : XM_517603
Canis
sp. (Dog) : XM_843546
HIX0004705
HIT000014866
(
AK074086
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 443,348 - 472,052 (28,705)
query : 6 - 5,063 (5,058/5,063)
13 exons
identity = 0.994
5'(1.000;0.995;0.998;1.000;0.995;0.963;1.000;
1.000;0.999)3'
coverage = 0.999
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12.5, mito 4, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000615020 (
ENST00000515601
)
(Exocyst complex component 3.)
genome : 443,348 - 472,052 (28,705)
query : 1 - 5,058 (5,058/5,058)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12.5, mito 4, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000261488
(
BC064569
)
(Exocyst complex component 3.)
genome : 446,264 - 467,401 (21,138)
query : 14 - 2,696 (2,683/2,742)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.995
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 12.5, nucl 4, mito 4, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000120362 (
ENST00000315013
)
(Exocyst complex component 3.)
genome : 446,264 - 467,407 (21,144)
query : 1 - 2,689 (2,689/2,689)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 12.5, nucl 4, mito 4, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000132788 (
ENST00000340158
)
(Exocyst complex component 3.)
genome : 446,264 - 467,407 (21,144)
query : 1 - 2,344 (2,344/2,344)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 16.5, nucl 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000027346
(
AL832434
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 447,720 - 467,403 (19,684)
query : 1 - 2,412 (2,412/2,427)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.3333, cyto 10,
cyto_mito 5.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000089899
(
BC019304
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 447,794 - 467,401 (19,608)
query : 1 - 2,336 (2,336/2,361)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 7, mito 5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000434615
(
AK315749
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 453,485 - 467,013 (13,529)
query : 1 - 1,874 (1,874/1,874)
10 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, pero 3, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000050374
(
AK131103
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 453,512 - 472,051 (18,540)
query : 1 - 4,813 (4,813/4,813)
13 exons
identity = 0.994
5'(1.000;1.000;0.997;1.000;0.983;0.976;1.000;
0.995;0.999)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 16.5, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000604150 (
ENST00000503889
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 453,512 - 472,051 (18,540)
query : 1 - 4,813 (4,813/4,813)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.997;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 16.5, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000030467
(
BC001511
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 453,581 - 467,401 (13,821)
query : 1 - 2,166 (2,166/2,196)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 17.8333, nucl 11.5,
cyto_plas 10.6667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000064617
(
AF055006
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 453,941 - 467,401 (13,461)
query : 1 - 1,806 (1,806/1,823)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 15, nucl 5, mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000304311
(
CR625116
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 457,035 - 467,363 (10,329)
query : 1 - 1,511 (1,511/1,511)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 16.5, nucl 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000610757 (
ENST00000511015
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 461,745 - 464,843 (3,099)
query : 1 - 1,031 (1,031/1,031)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 12, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004705
HIT000606045 (
ENST00000505947
)
(Similar to Exocyst complex component 3; Exocyst complex component Sec6;)
genome : 464,904 - 466,193 (1,290)
query : 1 - 845 (845/845)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004706
HIT000610474 (
ENST00000510714
)
(Conserved hypothetical protein.)
genome : 466,239 - 472,991 (6,753)
query : 1 - 601 (601/601)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 8, nucl 5, cyto_mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004706
HIT000088301
(
BC014166
)
(Hypothetical short protein.)
genome : 469,860 - 471,633 (1,774)
query : 10 - 1,783 (1,774/1,811)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004705
HIT000609166 (
ENST00000509294
)
(Hypothetical short protein.)
genome : 469,971 - 471,696 (1,726)
query : 1 - 591 (591/591)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13.5, cyto 10.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0121512
HIT000461119
(
DQ594588
)
Representative transcript
(Non-protein coding transcript.)
genome : 470,144 - 470,173 (30)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
5'(0.967)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0121512)
HIX0004706
HIT000261636
(
BC064928
)
(Conserved hypothetical protein.)
genome : 470,572 - 473,078 (2,507)
query : 1 - 2,507 (2,507/2,521)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 6, cyto 5.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004706
HIT000266133
(
BC086861
)
(Conserved hypothetical protein.)
genome : 470,625 - 473,061 (2,437)
query : 1 - 1,724 (1,724/1,780)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 10.5, extr 6, mito 6, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004706
HIT000010414
(
AK027140
)
(Hypothetical protein.)
genome : 470,625 - 472,555 (1,931)
query : 1 - 1,931 (1,931/1,952)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 14.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004706
HIT000242983
(
AF370427
)
Representative transcript
(Conserved hypothetical protein.)
genome : 470,625 - 473,177 (2,553)
query : 2 - 1,844 (1,843/1,861)
2 exons
identity = 0.998
3'(0.998;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 10.5, extr 6, mito 6, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000017788
HIX0004706
HIT000562401 (
NR_024158
)
(Conserved hypothetical protein.)
genome : 470,625 - 473,080 (2,456)
query : 1 - 1,743 (1,743/1,760)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 10.5, extr 6, mito 6, cyto 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004706
HIT000024717
(
AL117555
)
(Hypothetical short protein.)
genome : 470,625 - 471,999 (1,375)
query : 3 - 1,377 (1,375/1,393)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004706
HIT000098228
(
BC045808
)
(Conserved hypothetical protein.)
genome : 470,625 - 472,917 (2,293)
query : 3 - 1,582 (1,580/1,597)
2 exons
identity = 0.996
3'(0.995;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, extr 11, cyto_nucl 11, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004705
HIT000006452
(
AK023178
)
(Conserved hypothetical protein.)
genome : 470,626 - 473,178 (2,553)
query : 1 - 2,553 (2,553/2,553)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13.5, cyto 10.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004706
HIT000602698 (
ENST00000502337
)
(Hypothetical short protein.)
genome : 470,822 - 472,777 (1,956)
query : 1 - 490 (490/490)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004705
HIT000298099
(
CR618904
)
(Hypothetical short protein.)
genome : 470,876 - 471,783 (908)
query : 1 - 908 (908/908)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13.5, cyto 10.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004706
HIT000289803
(
CR610608
)
(Conserved hypothetical protein.)
genome : 470,881 - 473,080 (2,200)
query : 1 - 1,487 (1,487/1,487)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 10.5, extr 6, mito 6, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004706
HIT000264916
(
BC072677
)
(Conserved hypothetical protein.)
genome : 470,932 - 473,076 (2,145)
query : 1 - 1,290 (1,290/1,339)
2 exons
identity = 0.998
3'(0.999;0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 11.5, cyto 5.5, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004705
HIT000093429
(
BC034427
)
(Hypothetical short protein.)
genome : 470,971 - 472,051 (1,081)
query : 1 - 1,081 (1,081/1,100)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13.5, cyto 10.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004705)
HIX0004706
HIT000610382 (
ENST00000510604
)
(Conserved hypothetical protein.)
genome : 471,362 - 473,075 (1,714)
query : 1 - 859 (859/859)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 12, cyto 5.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0004706
HIT000602860 (
ENST00000502511
)
(Non-protein coding transcript.)
genome : 472,222 - 472,858 (637)
query : 1 - 552 (552/552)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004706)
HIX0032039
HIT000109501 (
ENST00000264938
)
(Conserved hypothetical protein.)
genome : 473,334 - 524,549 (51,216)
query : 1 - 2,777 (2,777/2,777)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032039)
HIX0032039
HIT000200941 (
NM_004174
)
(Na+/H+ exchanger family protein.)
genome : 473,334 - 524,549 (51,216)
query : 1 - 2,777 (2,777/2,777)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR004709 : Na+/H+ exchanger
IPR006153 : Cation/H+ exchanger
IPR018410 : Na+/H+ exchanger, isoforms 3/5
IPR018422 : Cation/H+ exchanger, CPA1 family
GO :
0006812 : Biological Process : cation transport
0006814 : Biological Process : sodium ion transport
0006885 : Biological Process : regulation of pH
0015299 : Molecular Function : solute:hydrogen antiporter activity
0015385 : Molecular Function : sodium:hydrogen antiporter activity
0016021 : Cellular Component : integral to membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032039)
HIX0032039
HIT000218904
(
U28043
)
Representative transcript
(Sodium/hydrogen exchanger 3; Na(+)/H(+) exchanger 3; NHE-3; Solute carrier family 9 member 3;)
genome : 473,425 - 524,447 (51,023)
query : 1 - 2,584 (2,584/2,584)
17 exons
identity = 0.999
3'(1.000;0.996;1.000;1.000;0.994;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR004709 : Na+/H+ exchanger
IPR006153 : Cation/H+ exchanger
IPR018410 : Na+/H+ exchanger, isoforms 3/5
IPR018422 : Cation/H+ exchanger, CPA1 family
GO :
0006812 : Biological Process : cation transport
0006814 : Biological Process : sodium ion transport
0006885 : Biological Process : regulation of pH
0015299 : Molecular Function : solute:hydrogen antiporter activity
0015385 : Molecular Function : sodium:hydrogen antiporter activity
0016021 : Cellular Component : integral to membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032039)
Ortholog candidate ( ->
Evola
)
Equus
sp. (Horse) : DQ492248
Danio
sp. (Zebrafish) : EF591980
Danio
sp. (Zebrafish) : EF591984
Oryzias
sp. (Medaka) : ENSORLT00000011454
Pongo
sp. (Orangutan) : ENSPPYT00000017789
Tetraodon
sp. (Tetraodon) : GSTENT00019354001
Rattus
sp. (Rat) : M85300
Takifugu
sp. (Fugu) : SINFRUT00000153535
Monodelphis
sp. (Opossum) : XM_001363092
Gallus
sp. (Chicken) : XM_418895
Macaca
sp. (Macaque) : XR_011592
Pan
sp. (Chimpanzee) : XR_020293
Pan
sp. (Chimpanzee) : XR_023180
Pan
sp. (Chimpanzee) : XR_024451
HIX0032039
HIT000337024
(
BC101669
)
(Sodium/hydrogen exchanger 3; Na(+)/H(+) exchanger 3; NHE-3; Solute carrier family 9 member 3;)
genome : 473,471 - 524,445 (50,975)
query : 1 - 2,536 (2,536/2,536)
17 exons
identity = 0.999
3'(1.000;0.996;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR004709 : Na+/H+ exchanger
IPR006153 : Cation/H+ exchanger
IPR018410 : Na+/H+ exchanger, isoforms 3/5
IPR018422 : Cation/H+ exchanger, CPA1 family
GO :
0006812 : Biological Process : cation transport
0006814 : Biological Process : sodium ion transport
0006885 : Biological Process : regulation of pH
0015299 : Molecular Function : solute:hydrogen antiporter activity
0015385 : Molecular Function : sodium:hydrogen antiporter activity
0016021 : Cellular Component : integral to membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032039)
HIX0032039
HIT000337026
(
BC101671
)
(Sodium/hydrogen exchanger 3; Na(+)/H(+) exchanger 3; NHE-3; Solute carrier family 9 member 3;)
genome : 473,471 - 524,445 (50,975)
query : 1 - 2,536 (2,536/2,536)
17 exons
identity = 0.999
3'(1.000;0.996;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR004709 : Na+/H+ exchanger
IPR006153 : Cation/H+ exchanger
IPR018410 : Na+/H+ exchanger, isoforms 3/5
IPR018422 : Cation/H+ exchanger, CPA1 family
GO :
0006812 : Biological Process : cation transport
0006814 : Biological Process : sodium ion transport
0006885 : Biological Process : regulation of pH
0015299 : Molecular Function : solute:hydrogen antiporter activity
0015385 : Molecular Function : sodium:hydrogen antiporter activity
0016021 : Cellular Component : integral to membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032039)
HIX0032039
HIT000501786
(
BC143328
)
(Sodium/hydrogen exchanger 3; Na(+)/H(+) exchanger 3; NHE-3; Solute carrier family 9 member 3;)
genome : 474,993 - 524,445 (49,453)
query : 1 - 2,487 (2,487/2,504)
16 exons
identity = 0.998
3'(0.992;1.000;1.000;1.000;0.992;1.000)5'
coverage = 0.993
InterPro :
IPR004709 : Na+/H+ exchanger
IPR006153 : Cation/H+ exchanger
IPR018410 : Na+/H+ exchanger, isoforms 3/5
IPR018422 : Cation/H+ exchanger, CPA1 family
GO :
0006812 : Biological Process : cation transport
0006814 : Biological Process : sodium ion transport
0006885 : Biological Process : regulation of pH
0015299 : Molecular Function : solute:hydrogen antiporter activity
0015385 : Molecular Function : sodium:hydrogen antiporter activity
0016021 : Cellular Component : integral to membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032039)
HIX0032039
HIT000613879 (
ENST00000514375
)
(Na+/H+ exchanger family protein.)
genome : 474,993 - 524,445 (49,453)
query : 1 - 2,487 (2,487/2,504)
16 exons
identity = 1.000
3'(0.996;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.993
InterPro :
IPR004709 : Na+/H+ exchanger
IPR006153 : Cation/H+ exchanger
IPR018410 : Na+/H+ exchanger, isoforms 3/5
IPR018422 : Cation/H+ exchanger, CPA1 family
GO :
0006812 : Biological Process : cation transport
0006814 : Biological Process : sodium ion transport
0006885 : Biological Process : regulation of pH
0015299 : Molecular Function : solute:hydrogen antiporter activity
0015385 : Molecular Function : sodium:hydrogen antiporter activity
0016021 : Cellular Component : integral to membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032039)
HIX0032039
HIT000217216
(
S83545
)
(Cation/H+ exchanger, CPA1 family protein.)
genome : 477,490 - 483,482 (5,993)
query : 1 - 670 (670/674)
6 exons
identity = 0.996
3'(0.971)5'
coverage = 0.994
InterPro :
IPR006153 : Cation/H+ exchanger
IPR018410 : Na+/H+ exchanger, isoforms 3/5
IPR018416 : Na+/H+ exchanger, isoforms 3/9
IPR018422 : Cation/H+ exchanger, CPA1 family
GO :
0006812 : Biological Process : cation transport
0006814 : Biological Process : sodium ion transport
0006885 : Biological Process : regulation of pH
0015299 : Molecular Function : solute:hydrogen antiporter activity
0015385 : Molecular Function : sodium:hydrogen antiporter activity
0016021 : Cellular Component : integral to membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 12, extr 8, plas 6, E.R._mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032039)
AC010442.7
461708-477707 F -
NCBI
AluSg
AluJo
L1M5
AluSp
L1M5
L1M5
AluSz
L2b
(CACG)n
GC_rich
GC_rich
GC_rich
G-rich
G-rich